Array 1 470459-473353 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBI010000002.1 Salmonella enterica isolate 1585_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 470459 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 470520 29 100.0 32 ............................. ATCAGAAAGATTCTAATTCAGGCAATGTTGGT 470581 29 100.0 32 ............................. CCTGGAGCACTATTTACAGTGGGGAGAATACA 470642 29 100.0 32 ............................. TATGTGGATCGCGTAGAGTATCCATCCAGCCG 470703 29 100.0 32 ............................. TCTTCTTTTGACCAATACATCCGTCGCTCGTT 470764 29 100.0 32 ............................. ATACTAACCCTATATTATCCGCAACACTGGAA 470825 29 100.0 32 ............................. CGAGCGCCCGACGTCAGGCTTAAACACCACTG 470886 29 100.0 32 ............................. ACGTGGATCTGGTTTCCGGTACGGTGCACGTT 470947 29 100.0 32 ............................. GACATTTCATCCGGGGTTATTTGCCATTCACG 471008 29 100.0 32 ............................. GACACCACAACTACGCGGCGGCAAAACTGGCT 471069 29 100.0 32 ............................. ATTTCGCGAAACGGCGGTTTAACCGTCACGGC 471130 29 100.0 32 ............................. AACATAACCGGCACCCCCTGGCAAAATAGCGC 471191 29 100.0 32 ............................. GTCGAATAAGTGCACATACATCCTCACTTACT 471252 29 100.0 32 ............................. ATGATCAGAACAGTGAGCAATTTGCCCTGAAT 471313 29 100.0 32 ............................. CCCGCCCGCACAGGGAGGCGGTAACAGCTCAA 471374 29 100.0 32 ............................. TCTCGCAAACATCCTTCAGGCAAAACCACGGT 471435 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 471496 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 471557 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 471618 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 471679 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 471740 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 471801 29 100.0 32 ............................. CCGTAGATCGCATCACCGGCGCTACGCATCAG 471862 29 100.0 32 ............................. GCAGTAATCCCGGGTATTCCGAGTTATATGAA 471923 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 471984 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 472045 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 472106 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 472167 29 96.6 32 ..G.......................... AATTGATCACAATCCTGTATAAGCTGCGCAAA 472228 29 96.6 32 ..G.......................... AGGCTTTGACAATGGCCTGGTTAAGTTGGAGT 472289 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 472350 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 472411 29 93.1 32 ..G........................T. GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 472472 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 472533 29 96.6 32 ..G.......................... TCAGCGTAGGTTGTTGACGTCCCCACCAGCCC 472594 29 96.6 32 ..G.......................... CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 472655 29 93.1 32 ..G..........T............... TGGGAACCGTCAAGGCCCGAGGGTGACGGCTG 472716 29 93.1 32 ..G..........T............... GATTGTTCAGATTGGGAATTTGACCAACGCCC 472777 29 93.1 32 ..G..........T............... GTTACTGTATTATCTCTTGCATAGACCCGGCA 472838 29 93.1 32 ..G..........T............... CCTGAGGAGATATTCACCTTCCTGCATTTCAT 472899 29 93.1 32 ..G..........T............... TCTGGTGGCTGCCTCATATTGTTGCGCATCTA 472960 29 89.7 32 ..G..........T..............A GTCAAATAAATATGAGTGAAGAAGCCAAAGCC 473021 29 96.6 32 ..G.......................... CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 473082 29 96.6 32 ..G.......................... AAAAAAATGCGATCGGTACTCAACCCGGCCAC 473143 29 96.6 32 ..G.......................... CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 473204 29 96.6 32 ..G.......................... TGGGACATTCTCGCTAGTCACGGTCATGTCAT 473265 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 473326 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 48 29 97.5 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCACTACTAATCTTACAGACGGCGTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGCTTTATGCAAAACGCGTTGGTGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 489602-490912 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBI010000002.1 Salmonella enterica isolate 1585_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 489602 29 100.0 32 ............................. TGCGTGACGGAAAGATTCACGACCCTAAAACG 489663 29 100.0 32 ............................. GCTCAATCTCAGCAAACCATGCCGGCCGCCAT 489724 29 100.0 32 ............................. ATTAACCACCTGACGAACGTTAAAGACGTTAC 489785 29 100.0 32 ............................. CCTGATTACATGGCGTGCAAAATCACAGGGAA 489846 29 100.0 32 ............................. GCCGCAGAAGAGGTCGAAAAGCGCCGCGGGGA 489907 29 100.0 32 ............................. ACGTGGGAACAGAAATACGGTACTGAAGAGGA 489968 29 100.0 32 ............................. GCCCAACTTGGTATTGATGAAAACATGCTGCA 490029 29 100.0 32 ............................. CTTGTACCTCTATTCAGATAGCAATGCTGAAC 490090 29 100.0 32 ............................. CGCTTAACCTCTAACCCGCTGCGCTCAGTAAC 490151 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 490212 29 100.0 32 ............................. AAAATTATTGAGGATGAATTTAAAACAGGCGC 490273 29 100.0 32 ............................. GCTACTTACAGAGAACTACTGGCAAAAGAAAC 490334 29 100.0 32 ............................. GCAGGAAGACGCAGACGCGGCGCCCGGTGAAG 490395 29 100.0 32 ............................. GGATACCGATGATGCTAAAACTGCGCAGGGAA 490456 29 100.0 32 ............................. TTGCGTATTTCGATTGTCTGGACATTTCGTAC 490517 29 96.6 32 A............................ TCTGCGGCCGCTGGCGGCTGCGACACGTTCTA 490578 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 490639 29 100.0 32 ............................. CGAGCGTAGCCGCGTGGTCCTCTCTCAAAACA 490700 29 100.0 32 ............................. TATGGTCGCTGGGTGTGGTTCATCTTGCCTGT 490761 29 100.0 32 ............................. AATACACTGACAACTCATCAAGACAAACATTA 490822 29 100.0 32 ............................. TGGGATAAAGGACGTGCCGACACCGTTTTTTA 490883 29 96.6 0 ............T................ | A [490910] ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGTATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //