Array 1 8661-10625 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLA01000026.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM147, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 8661 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 8722 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 8783 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 8844 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 8905 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 8966 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 9027 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 9089 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 9150 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 9211 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 9272 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 9333 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 9394 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 9455 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 9516 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9577 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9638 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 9699 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 9760 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 9821 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 9882 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 9944 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 10047 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 10108 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 10169 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 10230 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 10291 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 10352 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 10413 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 10474 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 10535 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 10596 29 96.6 0 A............................ | A [10622] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 102-1594 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDLA01000329.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM147, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 102 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 163 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 224 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 285 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 346 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 407 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 468 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 529 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 590 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 651 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 712 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 773 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 834 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 895 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 956 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 1017 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 1079 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 1140 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 1201 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 1262 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 1323 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1384 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1445 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1506 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1567 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //