Array 1 35-735 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFIS01000523.1 Escherichia coli strain MEZEC35 523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 35 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 96 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 157 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 218 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 279 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 340 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 401 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 462 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 524 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 585 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 646 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 707 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCGACAAAATTCTCAAAACTCGATCAGGAAAATG # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGGCTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4436-2821 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFIS01000038.1 Escherichia coli strain MEZEC35 38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4435 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 4374 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 4313 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 4252 29 96.6 32 ........T.................... ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 4191 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 4130 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 4069 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 4008 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 3947 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 3886 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 3825 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 3764 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 3703 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 3642 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 3581 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 3520 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 3459 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 3398 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 3337 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 3276 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 3215 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 3154 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 3093 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 3032 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 2971 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 2910 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 2849 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //