Array 1 90315-90678 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDUJ01000002.1 Lysinibacillus sp. LK3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 90315 33 100.0 34 ................................. CCTGAAGAACTCATGTCTGAAATTACACAGCAGC 90382 33 100.0 32 ................................. TTAAAAATTGAAGGTGAGTTAAACATAGAAAC 90447 33 100.0 34 ................................. TTTAGGGCGTTAGGATCGGTACTCCCTCCACCGT 90514 33 100.0 33 ................................. TCTTTAGACGTTTCATGTCCTCGTTAGCGATAA 90580 33 100.0 33 ................................. GATTTTTATAACAGTCTTAGCATGTTTGAAGAA 90646 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 6 33 100.0 33 GTCACTCTCTGTATGGAGAGTGTGGATTGAAAT # Left flank : GGCCATGGCGACAGCCACGAGCATGAAGCATCCGACTCGAATGAAGCAACACTACAATATGTGCAAATTAGCACTGCACAAGTGGTGAAAGAGGATGCCAAAGAAATGGAGTCTTCGAACGCTACACCAAGAGAAGAGCAACAAGCAGCCGCAGCAGATGACACAGCATCCAACTCAAACACAGTTTGGATGATCGCTATCCTAGCAGCACTAGCCGCTATTTTTGTTATTGTATTTGTGAAACGCAAGAAATAATGTAAATGAAAAGAACCAGCAATGACCGAGGGAATTCGGTTGTTGTTGGTTTTTTTAACAGGGAATTATTGCTATAATAAGGGAATGTGCGGATGGTAAGCGAACATGATTTTATAGCACGATTCGCACCAGAAATATTAGTGAAAATGCTTGTTAGATAAAACAATGTTAGTTTGAAATGCTCATGTATTTTTAAGGAATGATAATATTAAAGACGTTATATTAAAAATTTATTCATTTTTGCA # Right flank : TCTTTTGCTGATGACGGTGCTGTTAGCATCCCTGTCACTCTCTGTATGGAGAGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCTCTGTATGGAGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: F [matched GTCACTCTCTGTATGGAGAGTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 74547-73575 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDUJ01000020.1 Lysinibacillus sp. LK3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 74546 33 100.0 33 ................................. TATAATGTGACTTGTAATTACACTTCTAACAAA 74480 33 100.0 33 ................................. TGAAATAACTTCTGTTTCTACTGTATTAGGTAT 74414 33 100.0 33 ................................. CAGAAAAGTAAACAGACAGAATGACCTATTGTA 74348 33 100.0 35 ................................. TGCTTTTAGAGAAGGTACAATACCAGTTGGTTGTT 74280 33 100.0 33 ................................. TTTTCCGTGTCATAGAGATCACGCAACGCTTAA 74214 33 100.0 34 ................................. TATGTCAGGTCATAAAGTTGGTAAGAAGAAAACT 74147 33 100.0 35 ................................. TGAATACGACACACTTGTACTTGATGGTGTGAATT 74079 33 93.9 33 ......A...............T.......... GCTCAAGCGTTTAGAGTAAACATTTCACGATCG 74013 33 93.9 34 ......A...............T.......... ATTGAACACCCCTCCTTTACTCGGAAACCACAAC 73946 33 93.9 34 .....................AT.......... GTTGCCCTTTCAACGCCAAGAGTTGGAAAATTAC 73879 33 97.0 33 ......................T.......... TTTTGTAAGCATAAAAACGTTGGGTGGTACAGA 73813 33 93.9 34 ...............A......T.......... ATTACGCTGCATAGCTTTAATCAGTTGCTCTCTC 73746 33 97.0 35 ......................T.......... TTTATTCAGATGTCGATGTCAATTACAAAGTTGAT 73678 33 93.9 39 ......................T.A........ TCCATCAACAACCATTTTCCTCTCTCATTAATAAGGTAA 73606 32 75.8 0 ...CT..............T.-.T.C..A...A | ========== ====== ====== ====== ================================= ======================================= ================== 15 33 96.0 34 GTCACTCTCTGCATAGAGAGTGAGGATTGAAAT # Left flank : AGAAGAATATCCACCCTTTTTATGGAAGTGAGGTTTTGATATGCTAGTTTTAGTCACATACGATGTCGTCACGAAAACGGCTGCTGGTCAAAAGCGACTACGAAAAGTAGCAAAAATCTGTGAAAATTATGGACTACGTGTCCAAAATTCCGTTTTTGAATGTGTTGTCGATGCTACGCAATTTAAACAACTTCAACTTGCTCTTCAAGATAGTATTGATGAAAAAGAGGATAGCTTGAGGTTTTATCAGCTAGGCAACAACTATAATTCCAAAGTCATCCACGTCGGTGCTAAAGAAACATTCAATGTAGAAGATACGATAATTTTATAAACAATATTCAGTGCGGATGCAAAGCACACATAAAATCTCTACAAGATTCGCACCGATTATTGCCAAGATTTCATTGGGGAAATTTAGTTAATTGGGTAAAAAGTAAAGATAAAAATAAATTAATTGGTAAAATTATATTGAAAATGATCTCTATTAGTATAATTTTGCA # Right flank : AGGCAGTTCATTAAAATCTAAAACCCCGATACCAACCAAAAAAACGAACAGCACACCCTTAACCGCTGTTCATTTTTATTGCCTAAAACCATCCCACTTTCATTAAACCGTCAAACATTCCAAATAAACACCTGCATATTCCAGCAATTTTACACAAAATTGAATAAGCACAAGCATGTTCGGTATATAAATAGGGTACGAACATTTTTTGGTTAGGAGTGTGTAAATGGCTGTACTTGTAGTGAAGAGGAGCATAATGCATCGTTATCAAAGTATCGGGCAGGCGATTGAAGAGGCGGCGCCTGGGGATATGATTGAAATTCGGGATGGGATTTATGAGGAAAGCTTGGATATTGCCAAGCGGCTGACGTTGTATGGGGTTGGCAATGTGACCATCAAGGGTGGTGTATTTATTCGCTATCAAACTCCTGTCGCGATGCGTAATTTACGGTTCCGGCAAGGGCAGGGGCTATATGTGAAAGGTGATTTACAGCTAGAGA # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCTCTGCATAGAGAGTGAGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: R [matched GTCACTCTCTGTATAGAGAGTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.90,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 84725-83024 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDUJ01000020.1 Lysinibacillus sp. LK3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 84724 33 100.0 33 ................................. TCCTTTCTCATTTTGTTTAGTTTTTGATTCGAC 84658 33 100.0 34 ................................. AGGAATGTCATGCCTACTGACTATTGGTGTCTTT 84591 33 100.0 33 ................................. CTTTACGCTACACTTATATAAATCCATCTCAAT 84525 33 100.0 33 ................................. ATTAAAACTAGACTGTCTTTGCCAATCATTTTC 84459 33 100.0 33 ................................. TACAATATCAGTAAATAACTTATCATCGTTACC 84393 33 100.0 34 ................................. ACTTGACGACCATAAAGGTGAGGTATTAGAAATT 84326 33 100.0 34 ................................. TTATATAAAATAGGGGGTGTGCTAATGCATACAG 84259 33 100.0 34 ................................. TACAATACCTAATAACCCTTCAGCACCCACACCC 84192 33 100.0 33 ................................. CCCAAACACCACACCTATCATCCTATTCTCCTT 84126 33 100.0 36 ................................. GCAATACGTACAGGCGGTGCGACTGCTGCCACGTTT 84057 33 100.0 34 ................................. CGTTGGATCTGTTTCCCCTGGTGGATCTGTTTCC 83990 33 100.0 34 ................................. CCTCCGACTAATACAGTATCTATAATGAAGCCAT 83923 33 100.0 34 ................................. AGGAACAACGGTTACTTTACCTGCTTTGGTTGTT 83856 33 100.0 33 ................................. AATACCATTCACAATCTTTTTTGTCGTAGTTGT 83790 33 100.0 33 ................................. GCACCATCCTTACTTGAATATTGTTTATATAAT 83724 33 100.0 36 ................................. ATTCATACCAACATTAATTAAATTCTCTCGATATTC 83655 33 100.0 33 ................................. TTTCTCAACTGCTTTCAAATACTTTTCATAATC 83589 33 100.0 33 ................................. AATGATTTTATGAACGACAAAAATACTTTTATA 83523 33 100.0 34 ................................. TAGCCCAATATACCAATTCGATAACTTCCCTCAA 83456 33 97.0 35 ....................G............ CAATTAGCTTTATCTTCAGGAGTTACATGATGTAC 83388 33 100.0 32 ................................. TTTTCGGCTCATGGGGCACGGCCTCTGGTAAA 83323 33 100.0 35 ................................. TTAATTATATCTGTTGTTACATCAACTGTTGTTTC 83255 33 100.0 34 ................................. TCTTTTGAATTAGCGAATTGCATCTGTATCCATT 83188 33 100.0 33 ................................. TTGAACGAAGATATGCCTTCGGATTTATTAACG 83122 33 100.0 33 ................................. TTTGTTGTACCTAACCGAGCTCCACTTTTATCA 83056 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 26 33 99.9 34 GTCACTCTCTGTATGGAGAGTGTGGATTGAAAT # Left flank : | # Right flank : GTATAGCTGCCCTCTACTCATAATATATAGTTTTGTCACTCTCTGAATGGTGGATTGAAATAAATCATTTGTCAGGTGAGCAAAGCTGTTGTTATTGTCACTGAGAGTGTGAATTGAATATGGTATCAAGAGGCGGAAGATTTAGATAATCACCGCCTCTTTTTGAATGGGAGAAAAACGATAAATTCTTTTGTGTAGGTCCTTAGACATATGGTCAAAGGTTTGGTATAATTGTTTAAATATTACAATTATGTATATAAGGAAGAAGGGAATAGATGTCTTCTGTAGATTTTATTGCGCATATTCGAGCGAGCGATGGAGCAGAGCAACGGTTAGTGGATCATTTAAAAGAGGTTCAAGCTTTGGCAGAGGATATTGGACAGAAAATCGGCCTTCCCCATGTCACTGGCCTTGCAGGAATGTTACATGATATGGGGAAATTTAGCCACGCATTTCAGGAATATATTCGTGAAGCGGCTGCTAATCCTGAAAATCCACCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCTCTGTATGGAGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: R [matched GTCACTCTCTGTATGGAGAGTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //