Array 1 1811-1989 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYW01000043.1 Propionibacterium freudenreichii strain ITG P14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================================== ================== 1811 27 100.0 50 ........................... NNNNNNNNNNNNNNNNNNNTCCAGGACGGTGTTTGGGTCCCCGCCCAGCG 1888 27 100.0 48 ........................... CATTGAGGCTAGAGGGGGGTCAAACGGCCCCGAGTCGGCATCCTGAGC 1963 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ================================================== ================== 3 27 100.0 50 ATTGCCCCTCCTTCTGGAGGGGCCCTT # Left flank : ATATAGGAATGACGGTCAGATGAGCCGACGAGATTCCCATTGCTTTCTGATCGCCTACGACGTGCCCGATGACCGTCGTCGCACCAGGTTGGCCACGGTACTGAAGGGCTACGGGGAGCGTGTGCAGTACAGCGTATTCATGGTTGATTGTCCGCCGTCACACCTGCTGGTGCTACGCCACGATCTCACCGACGCGATGGATATTGATGAGGACTCGGTGGTGATCTGCGACCTGGGCATGTCCACGTCGGCAGACGCCCAACGCATCACCTGGTTGGGCGGTCAGAGGTACCAGAGCGGCGGACGCAGCATCATCATCTGACGACCAGCGGCTCTGCGGCCCGGTTGTCACGCGGAGCCGCTCGCGTGATGTTTCCCCTTGTCACAAGCAGATTGCGCTGAAGGGGTCATCAATCCTCCACGCGCGAGCCATCCTTCTTCAGCACCGCTCGCAGGCGGCCGGTATAATGCCTAGTGGGAGCCCTGTTCCCACGCCCGCC # Right flank : TCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACTGGTTGCCGAACAGGAGGGCTGCGCACGCATTGCCCCTCCTTCTGGAGGGGCCCTTNNNNNNNNNNCATCTCCACCAGGAGCAGACATGGCGCCGGCCTGCCATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCATAGGGTGGCGGACCCTCCACCCTCTTGCAGCGGCTATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCGCGAACACCGCATAGATTCCGGTTTCAGGCACAATATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCAATGCTACGGAGAACAGCAAGAAGAATGGGTCGCTATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCCATGGCGTGAGGGGACGAAGCGGATCCGGTCACGGTGATTGCCCCTCCTTCTGGAGGGGCCCTTCATT # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.19, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 2 2777-2171 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYW01000043.1 Propionibacterium freudenreichii strain ITG P14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 2776 36 100.0 37 .................................... CCCCAGGCTTCCCCAGGGGTGGGGCAAGACTTCCCGT 2703 36 100.0 33 .................................... ATTCTGGGCCCTAGCAAGAGAAACCAAATACTT 2634 36 100.0 34 .................................... CCGATGTCTGTAGCCGCTATGGCTAAGATGTATG 2564 36 100.0 35 .................................... CACAGCGGAGGATTCTGCGCAATGCCACCGGAGCC 2493 36 100.0 37 .................................... CACCGTGACCGGATCCGCTTCGTCCCCTCACGCCATG 2420 36 100.0 35 .................................... AGCGACCCATTCTTCTTGCTGTTCTCCGTAGCATT 2349 36 100.0 35 .................................... ATTGTGCCTGAAACCGGAATCTATGCGGTGTTCGC 2278 36 100.0 36 .................................... AGCCGCTGCAAGAGGGTGGAGGGTCCGCCACCCTAT 2206 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 9 36 100.0 35 GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT # Left flank : CCGGCTCCCTGCGGTTCACGACCCCAGCAGCCGGGCCCGCTACTGAAACGATCACTCCCACATCCGGCCACGGACCGCCCGGTACGCCCTCGCAGATCTGCACGAGAGCGATCACGAACCCCGGGGCGCAGGTGAACTGCTCCGCACGCCCCACGACTCCCGGCATCCCCACCGACTCGGCCTCCACCGCCTCGCAACGGGCGGCAGAGCTGAAGTAGCGACTCCGGGCCCGGTCGGGGCCCCTGGAGCCCGGTCAGATGTGGTCCCGCTGAGGTGGTGGCGGATCCTGGTTCGACTACGGACCAGCATCCGCCACACTCTCGGGCCACCAGGCCCCGCCACATCAGGTGTCCGAAAAACCAGGGTAGGCCCACCAGAAGGAGGGGCAATATCAGTTAGCACGAACCATGGCTCGCCGCCGGCTTNNNNNNNNNNTGAAGGGCCCCTCCAGAAGGAGGGGCAATGTTCGCCATTGTCGTCGTGGCATTTGATTGATCGCC # Right flank : GGCAGGCCGGCGCCATGTCTGCTCCTGGTGGAGATGNNNNNNNNNNAAGGGCCCCTCCAGAAGGAGGGGCAATGCGTGCGCAGCCCTCCTGTTCGGCAACCAGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGGGCCCCTCCAGAAGGAGGGGCAATGCTCAGGATGCCGACTCGGGGCCGTTTGACCCCCCTCTAGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATCGCTGGGCGGGGACCCAAACACCGTCCTGGANNNNNNNNNNNNNNNNNNNAAGGGCCCCTCCAGAAGGAGGGGCAATGGCGGGCGTGGGAACAGGGCTCCCACTAGGCATTATACCGGCCGCCTGCGAGCGGTGCTGAAGAAGGATGGCTCGCGCGTGGAGGATTGATGACCCCTTCAGCGCAATCTGCTTGTGACAAGGGGAAACATCACGCGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 3 5026-5647 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYW01000043.1 Propionibacterium freudenreichii strain ITG P14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 5026 36 100.0 35 .................................... GCGGCCGCGATTGCGTTGAGCTCGCTGACGAACGT 5097 36 100.0 35 .................................... GCGTTCGCGAAGGCGATCGTCTCCAGCAGCCCTTG 5168 36 100.0 39 .................................... GCTTCCGTTGGTGAACACCATTTTGGTTTGATTCCACTC 5243 36 97.2 38 ......................A............. TCGTCGTGGGCGCCGGGCACGTCCATCTATCTGGCAAA 5317 36 100.0 39 .................................... ATGTCGGCGCGCTTCGGCCTGGTGCTGCCTCTGCGGGTG 5392 36 100.0 37 .................................... AAGATGAGCGGGCCGAGGGGTTCGACCCGGGACGCGG 5465 36 100.0 37 .................................... TCGGCATGATGCCAGCGCCGATTATCGTGAGCGTATT 5538 36 100.0 38 .................................... GTGAGCTCGGGCTGAGCGTGAGCCAGACAGCGGCAAAG 5612 36 97.2 0 .....T.............................. | ========== ====== ====== ====== ==================================== ======================================= ================== 9 36 99.4 37 ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Left flank : CCGAGTTGCCGGCATCCTTCCCACCCGCGACGAGTCCGAGCAACTGGGCAGGGCCACCAGGCCCCGCCACATCAGGTGTCCGAAAAACCAGGGTAGGCCCACTGGAGGGGCCCTTCATTGAGGCTTATGGATGATGACGTCAGCAATGATGAGCAAGAATTGCCCCTCCTTCTGGAGGGGCCCTTCNNNNNNNNNNTTGCACTCCACGACGAGCCTCCCCCGCATATGAATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCCTTCACCACCCGCGACGAGGCCATCACCGCTGAGCTCATTGCCCCTCCTTCTGGAGGGGCCCTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTGAGGTGGGTGGCCAGATCCTTGCCGGGA # Right flank : CAACCTGTGGGGCTTCCCGGTTGTCGTCACGACCGCATTGCCCCTCCTTCTGGAGGGGCCCTTNNNNNNNNNNGCACCAAGGCCCCGGCTCGGCGAGGGACGGTTGCCGTATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCGCATTTGCTTGCCCATTTGCTTCCTCCAATCTGCGTATTCCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCTTGCGCCAGCTCTCGGAGACGATGGCGCCTTGACGTGGCGTTGCCCCTCTCCCCGGGCGAAGCCCTCCACCCGTTCAACGTCCCGAAACTCACGGAACTCCCGCCGGCGCCGAGAGCTAGACTCGCCATGAGAAGGTGGGAGGTAGGGCAGACGCCCAGCTGACCCACCTTCCCTTTTTCGCACCCCCGGTGGCGCCAAGAGCCACCGATTCCGTCCAACCGCCCACCCTCTCGTCCACCCGCGCGAGGACCCGTCACCCCGATCAGCGCTCACTGACAAGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //