Array 1 138293-138561 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBVE01000004.1 Escherichia albertii strain 20H38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 138293 28 100.0 32 ............................ GTAACCATTGGTTACGATATTATCTCTCACAT 138353 28 100.0 32 ............................ CTGATGGGGATGCAACATCCGAAGACAATGCT 138413 28 100.0 32 ............................ CGCATACCAGCGCCCTGCCTCGTGAACAACCG 138473 28 100.0 32 ............................ GACTGGTTTAAACAGCGCTACGGCCAGATGTT 138533 28 92.9 0 ....................T...C... | C [138556] ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGCGTGTGATTCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGCCAGGTGACCGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGCTTCCAGAGTGCGCAAAAGCATAAACCGGAAGCCGCGCATTAATCTGATGGCGAAAAAAAATGCCTGATGCGCTGCGCTTATCAGGCCTACAAGGTTCGTGCAATCTATTGAATTTGCATGATTTTGTAGATTGGGTAAGGTGAATGTGCCGCATTCGACATAAACAAATCGCACGTTGTTAACAATCTGAGTCCGTAATCCTGTATGGGGTTACGGACTTTTTTTGCGCTTCGACGGAGCAGATGTGACCTTTTTTTGCGGGGGTGACGTAATTTATTGATAAAACTATGCGCAGGGATGTAGGGATAAAAAAGGGTCTGAGCGGGGAGTATTGATGGTTTCGCTTTATTAACAACGGACTAAGCGTGTAGTATTTGA # Right flank : ATACGATGATGGCAGAAATTTAGCTGCGTTATGGCGTTCTCAACTCCGAACCATTAGCTTCAGTACACAATAACAATCGTAATAATTGCGACGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACAGCATTGATGTTGGGGATGGGAACATCCGTGACTCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 152821-153755 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBVE01000004.1 Escherichia albertii strain 20H38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 152821 28 100.0 33 ............................ AAAATGATTACGGATATCTTCCAGCACCGTAAT 152882 28 100.0 32 ............................ TTGAGCGCTGTTCAGTGTGCCAGGGTTCAAAC 152942 28 100.0 34 ............................ ATCATCGTTCTGTAATTGTCTAGCCATTTGCAAT 153004 28 100.0 32 ............................ GTAACCAATGGTTACGCTCAAGTGATTTTTTA 153064 28 100.0 32 ............................ CGGAGGAAATCACATGGCGCGGCTAACAACAC 153124 28 100.0 33 ............................ TGTCCGCGTCCACGATAGCCGCGGCGGCTGTGA 153185 28 100.0 32 ............................ AACACGAACGGACCGCATTGTGAACACCTCTG 153245 28 100.0 32 ............................ CTGAGCCAAAAGTCACCGGGGTGGAAGTCTTT 153305 28 100.0 32 ............................ AGCTCGAGCAGCAGTATCAGACGTCTATTAAA 153365 28 100.0 33 ............................ CTAACTCAAAGCCTCCGTCAGTGAGTGCGACAA 153426 28 100.0 32 ............................ TTCATGCGTCTCTGGTAGCGACGGTGAGCGAT 153486 28 100.0 32 ............................ AAGGTCTACAACGACACCATGCGCCCGGTCAC 153546 28 100.0 33 ............................ GAGCTGCGTGGGGCTTTATCAGAGGTGAAATAT 153607 28 100.0 33 ............................ TTTGGTCATTGATACCACTTCCCCAAGAACGTT 153668 28 100.0 32 ............................ CCGGTGATACGGGCGGAACGACGCGTTTTTTG 153728 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================== ================== 16 28 99.3 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTGTTTTTTATTTAAGACGCTCAATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCTGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATAGAGATTGATTCGTTTGGTTACGCAATGAACACGCTGTTTGCGTGACGGAGATTATGACCGTATGTGTTCTGTTCAATTGTTTATCAAAAGCTATGCCTAAAATATGAGATTGAAGAAGTACCAAATCGACCCTTTTTTTAGGTTGAAATGTAACTCATTGATTTTGTTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTAAATCTGCGACTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTTAACACACCATCCTCCAGTATTTATTCCCCGTAACTCCAAACGCAAAAAAGGCCGGTTAAACCGACCTTCTATTCGTTCTTTCTCTTCGCCCGTCAGGCGGTAAAATAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCCAGTACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCATAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGTGCGCTAAATCGCAACAAACAGGTTTTGCACATAACTCCGAAAACACACGGCTAAGCCGCACCATAAGCGCAACATATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 61357-60900 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBVE01000014.1 Escherichia albertii strain 20H38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 61356 29 100.0 33 ............................. CGCTGGCAATAAACCCGGTAATACCAGACGCGC 61294 29 100.0 32 ............................. AATTTTTTGGCACTGGTGTGCCGCTCTAACCG 61233 29 100.0 32 ............................. ATTTTTAACGGCGAAATGGTGCGCGCCATTCT 61172 29 100.0 32 ............................. AAGCAACAAATGCCGTATACGGCACATTTATA 61111 29 100.0 32 ............................. CGCGGCGGTCGTGAGGCGCTCAACAGCGAGGA 61050 29 100.0 32 ............................. CTGGCTCGTCTGGCTAACCTTAATATTGAGGA 60989 29 96.6 32 ...........................C. ATAAATTATGTCTACGGCGAACAACTGTACCA 60928 29 89.7 0 ......................AT.T... | ========== ====== ====== ====== ============================= ================================= ================== 8 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACTG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCCGCGCCGGATATGTTACCCCCTGCAATTCCTGAACCTGAAACATTAGGCGATAGCGGTCACCGGGGGCGCGGTGGATGAGTATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTTCGCGCAGGTGTATATGTCGGAGATACGTCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCACTCAACTGGCCGGTTGTGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACTTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTACCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTTGTTGGTAGATTGTTGATGTGGAATAAACTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GCTTCTATTTTCAAACTCATCAGGACGCCTTCGCCAGTTCCTTCACCAGTGGCAGCATTATCCGCATAATGTCACGGCAGCGACGTTCTATTCTTCCTGGAAGCGCCTTATCAATATGTTGTTGATTATCCAGCCTTACATCATGCCAGCTATTTCCCTTCGGGAACGCTGCTGTTTTTGCGCGTTGTTGATAGCCGTCTTTATTTCCAAGACTCCAGTTTGTCGCTTCAACGGAAAGTACAGCAATACCTGCTTTGTCGAAAACTTCTGCATCATTACAACATCCCGTGCCTTTCGGATAATTTTTATTCAGACCTGGATTTGTGGCGGCGGCAATTCCATGGCTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACCGCTTCCGGGGTGTTTACGCCGCTATTGAAATACAGCTTATCGCCTACAATCAGGTTATCGAGATTAATAACCAGTAGAGTATTTTTCTTTTCGGCTTCACTCATTCGCTTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 88390-88178 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBVE01000014.1 Escherichia albertii strain 20H38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 88389 29 100.0 32 ............................. ATACGGGTCGCGACGCTGGGTGATTTACCAAA 88328 29 100.0 32 ............................. AATATGTTCTGCACAGGCTTTGAGGGCGAACT 88267 29 96.6 31 .............C............... GACTCGCAATCGCCGGAAGACGCGATCAGTT 88207 29 93.1 0 .............C..............A | A [88204] ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GGGTTCCCCGCGTTAGCGGGGATAAACCG # Left flank : CTGGATGAGCTATTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAAACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAACTCCTCCATTTTGCCTATCCGGGACTAATCATTGCCATTCTCTACAAATTATGTGGCGTTAATTCTTTGTTGGAATGAAAATTATTGCGGTAGAGTTTGGTAGATTTTAGTTTGTATAGAATCACTTTAAATATTTAACTTTTCACTCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTTTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : TACAGTTGCGTTCAGGCCGGGCAGTTTCCCGCCCGGTTTTCCTCATTTAGGCATTCGACCAGCTCTGGATTGAATCCGCATTCCCTAACTCACCATGCATCACTTCATACGATTTTTTCAGAATCACATCGGTGTGTTTGGTTAGGTCTTTGAAAATGCCCTTATTCATTGCGTCGTAGCGTTTGGCATTGCTCTCAACAGGCATAAAGACATCTTTCACGCGAACCATTTTGTCGACAGCCGTTGCGTAATCTGGGTATAACCCCAGTCCTACCGTCGTATTGATCGCCGCTCCCAGGCTTGCACAGCCGTTAATGGCGTTACGTCGTGCCGGAAGGTTGAACACATCGGCAAAAATCTGCATAAACAGATCGCTGTTCGAACCGCCGCCAGTAATGATTACATGCTTCGCAAAGTGATTCATTTCATTACACATATTGTCGTAATTATTCTTCAGCGTCAGCGCCACGCTTTCCAGAATCGAACGATAAATCCAAGCG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTTCCCCGCGTTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //