Array 1 690-478 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXZG01000063.1 Ligilactobacillus salivarius strain KLW001 NODE_157_length_725_cov_0.126984_ID_9715, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 689 29 100.0 32 ............................. GAGATCTACTCAGACTACTATTCATTAACTAA 628 29 100.0 32 ............................. TAAACGATTAGATAAAGAGAAAGCTGCAGCAG 567 29 100.0 32 ............................. GTTTGGATGGGTAGCAGATAACGAGCGTAAAA 506 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTACCCATATGTACGTGGGACAGACT # Left flank : CCTAGTACTGTGGGATTTATTGGTCTGATTTTTAG # Right flank : TTAAGGGACTCGAACCCCTACTTACCGTCAACAATTAAATACAAAAATTCGTGTGTATATACAGGAGTGATTTCACATTGTCATGTTTACCCTTGCAAGTGAAAACACAAGCAGCGTTACAATTACATATTATTGTTTGTCTAGTAATTGATGTAATTGTTCATCGTCAGTTAGCTGTTACTCTGGTTTAAGGTCTATCAACTCTTGTTCGCGTTGCTTTATTAGTTCTACTTCTGGGAGTTATGTTCTAATCATTCCTGTACATGCACACGAATGTGAGAAAGAAGTTGGTTAGTATTATCTATGTAATTGGTAGTATTTCTGCTGGTAAATCTAGTTTAACAGAAATACTCGCTAAAGATTTAAATAGTACACCATACTATGAAGATGTAGACAATGGCTTAATCAAAGGCATGTTGGAACATTTTTACAGTGCTGGTGCAGAAAGTAGAAAACAAGTTAGTGCTATGTTACAGGT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTACCCATATGTACGTGGGACAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 8639-8207 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXZG01000120.1 Ligilactobacillus salivarius strain KLW001 NODE_58_length_9718_cov_0.172503_ID_9507, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 8638 36 100.0 30 .................................... TTACGGTAGAATGTATCTTCAATTTTTCTA 8572 36 100.0 30 .................................... GCTACTACTCATTGTGAACTTAAACTGGTT 8506 36 100.0 30 .................................... AGTACTAGCGGCTCATCTGCATATATACTA 8440 36 83.3 30 .............TTG..T..........GT..... CATTGAAGTTCGTATGGTGGATATCATCTA 8374 36 86.1 30 ............A.T.....A........GT..... ATAGGTTTAATGATTGCTCCAATGGTTGAA 8308 36 83.3 30 .......G....A.T......G.......GT..... TCACGTTTATGTGAGTGATTATAATTCACA 8242 36 86.1 0 .......G....A.T..............GC..... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 91.3 30 GTTCTGAACCTAGGCTAAATGACATAGGTTGAAGAC # Left flank : AACTAGCAAAAAACAGTTAAGGCTCCTTAATGTTTGTTTTGCTGTTGAAAAAGAAAGTCACATCTAGGGTTACCTAAGCTTGTGGCTTTTTTTATTTTTTAACTTTTTTGAATTTTATTTTAAAAAAGTATACAAAAACATTTGACTTAGAGTGTGAGATAGTGTATCATAATAAACGTAAGGCAAAGGGTTAAGCCTACAGGGACATCAGTAAACTACATGTAAGCCTCTATCGTTCCTGTAAGCATTAGCACAAGCCTTATAATCTTAACTTTATCTTTATTCATTTATGTACATTTTATGTGTAGCGATGCCAAACGGTAGATCAATGCAGGTGCAATTCCTGCCATCGCTATTGGAGGACGCTTGTTCTCGACAGCTTGGTTAATATCTTTGACCTCTGTATAATCGCAAATTGCATTAGTTTGTTTACGATTATGCAAGTCTGAAGAGTTCCCAAGAAGCTTATGCCACAATTAAATACAGGTTAGAAAATAACG # Right flank : TGAAATCATGGGCTTAATTAAAGTCAAAACAACGATGTAGCTCAATGGTAGAGCAAAGCGAGGCGACGTAGGTTCGATTCCTACCATCGTTATTGGAGGGTGCTTGCTCTTCACAGTTTGGTTAACATCTTCGCAAACAAAGTTGCTGATTGCATTTCTTTGTTGAAGAGTTCCCAAAAAGCGCTGATAGCACAAATAAAGACGTCCATTGTGGAAGACTAATGTAGTGTAGTCAGCTGAAAGACTATACATAAATTACGTTGGTGTTTAAAAAGGAGTTGGAAAAAATGGAAGAAAAAGTTTTAGAAAGTCGTAGAATTAGAATTTATCCTACTAAGGATCAACAAGCATATTTAACGTTTAATATGTTTGCTAATATCAAGATGTGGAACGCATTACTAGCTGAAGTTTATAAGCCAGTTAGTGAGTTAGATGAAGTTCAAGCTTTACCTAGAAACAAACAAAGTAAAGAAGTTTATAAACGCATTGAAAGAATGTCA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.56, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTGAACCTAGGCTAAATGACATAGGTTGAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 21362-22245 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXZG01000082.1 Ligilactobacillus salivarius strain KLW001 NODE_23_length_36179_cov_2.66595_ID_9433, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21362 29 100.0 32 ............................. TATGGCAGAAAGCCCGGAAATTAGATTATAAG 21423 29 100.0 33 ............................. GTAACTTCAAATTCAGCTACTTTGAGTTGGACG 21485 29 96.6 33 ............................C TATATATCTGACGGAAGAGCAACAACACAGACG 21547 29 100.0 32 ............................. TACAAGTAGCGAATGTGCAACAACAAAAGGTT 21608 29 100.0 32 ............................. CAGATACCCACTTAGCTAAATCAGGATCATTA 21669 29 100.0 32 ............................. CATAGCAGCCAAGCTATAACATTACGTTATAT 21730 29 100.0 32 ............................. TGATAATATTCATTTTTCCTTGATCTGCAAAA 21791 29 100.0 32 ............................. TATAGACTTAGTGAAGAAGTTTAATAATTTAA 21852 29 96.6 32 ............................C TAGCTTTCACACTTGCTCCATACTGTCGCGTG 21913 29 100.0 32 ............................. ATTACAGTCGACTGGGAACAAAGCGACTACAA 21974 29 100.0 32 ............................. GAAACAAGGCAATTTCTATGTTAAAGATGGAG 22035 29 100.0 32 ............................. ATAAGGCTAAAGTGCTTAAGGATAGTGGTTCA 22096 29 100.0 32 ............................. ACATATGCTAATTCTTCCTTAGCATCATCTGG 22157 29 100.0 32 ............................. TTTGAAGATGGCACAGCTTATTTAGCAGTTGC 22218 28 86.2 0 ........T.......-C.........A. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.6 32 GTGTTCCCCATGTATGTGGGGGTGATCCT # Left flank : TTAGAGAAAGATAGTATTATATCAATAGGTGCCGTTAAAGTAGAAAATAATAGCAAGCATGACTATTATTCTCTTATTAAAGGTATAGAAGAAATTCCAGATGAAATCAGTGAGTTAACTGGTATAGGAATTGATGAATTGAATAAAGATGGTGAAGATATATATAAAGTTTTAAAAGTATTGTATGGGGTTTTAGATGATGCTATTATTATTGGGTATAATCTTAATTTTGATCTTAATTTTCTTAATAGAGAATATGAGCAATATACTGAACTTAAGTTAGTAAATAAGGTGATTGATTTACTCCCAATAGTAAAAAAACAGTGTCGTTTTTTAGATAATTATCGCTTAGAAACGGTATTGCAATATTTTGGTATAGAAAATTCTCATCCACATAATGCATTGGAAGATGCTAAGGCTTGTATTGAATTGTATGAGAAACTAATAAAAAACAAATAGTAGTAACTTCAAAAAGATCGATTTAATAGGGATATTTTACT # Right flank : TTTAGAAAAATTAAAGAAGTAAGGTCTTAAGTTATATTTCTAAAGTACTTTATAATATAGATTATAATATCCTCTGAGTATACAGATGAAATAGAAAATGACTCTGATGCTCAGGGGGTATTTCTATGGAAAAAAATCTAAATATTCAGTTGAAGGAAAACTATCAATACTTAATGAAACTTCACATATCGGAATTTTTGAAGTAACAATTAAGTATGGAATCGATTATAAAACTATTGGACGATGGAGACTGCTTTATCAGTATCAAGATCTTTAACCAAGTAATAGAAATCAGAATTATTCTAAGGAATTCAAGTATTTATTAGTTGAGCAATACAAACATTTAAACGAACCCGCGAAACTATTTGCGATAAAAAAGGTCTACGTTCAGTAATTCAGTTTAGGCAATGGATTATCTGATCCGGTATAATGAATCTAACTTAAGGACCAAGGACCCAGAAAGAGAGATTCAAAAAAAGAGTGGACGAAAGACTAGTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCATGTATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //