Array 1 30-1679 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAPR01000003.1 Pasteurella multocida strain C51-3 PMCNE_contig000003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30 28 100.0 32 ............................ TATGAGCATTTACGTGACTTATTTACGCTTGA 90 28 100.0 32 ............................ CGAAAAACTACGTCATCCAAAAGCCATTTTAT 150 28 100.0 32 ............................ ATTACCAATGTTAAAGGGTTAACTGTGCTCGA 210 28 100.0 33 ............................ CGTTTCCGTCAGATAGATAAGATTTAGTTGCTT 271 28 100.0 32 ............................ TAGCACCGCGAATTGCTCCGAAATACCGATTT 331 28 100.0 32 ............................ ATTACCAATGTTAAAGGGTTAACTGTGCTCGA 391 28 100.0 33 ............................ CGTTTCCGTCAGATAGATAAGATTTAGTTGCTT 452 28 100.0 32 ............................ TTTTTTGTTATATAGATATGCTACAAATGACC 512 28 100.0 32 ............................ TATGAGCATTTACGTGACTTATTTACGCTTGA 572 28 100.0 32 ............................ CGAAAAACTACGTCATCCAAAAGCCATTTTAT 632 28 100.0 32 ............................ ATTACCAATGTTAAAGGGTTAACTGTGCTCGA 692 28 100.0 33 ............................ CGTTTCCGTCAGATAGATAAGATTTAGTTGCTT 753 28 100.0 32 ............................ TAGCACCGCGAATTGCTCCGAAATACCGATTT 813 28 100.0 32 ............................ ATGAGGATTTCCATGCGTCCTTGAATACCGCC 873 28 100.0 32 ............................ ATGTTCATTAACAACAATATCTACTGCCTCTT 933 28 100.0 32 ............................ CGCAGACAGCAACATGCGGTGATGTGAATCTG 993 28 100.0 32 ............................ ATCACGGCGATGAGAAACAAGCTTAAAAGAAG 1053 28 100.0 32 ............................ ATGTTCATTAACAACAATATCTACTGCCTCTT 1113 28 100.0 32 ............................ CGCAGACAGCAACATGCGGTGATGTGAATCTG 1173 28 100.0 32 ............................ ATCACGGCGATGAGAAACAAGCTTAAAAGAAG 1233 28 100.0 32 ............................ AAGTATTCCTGCTGCACTTCTTGCGCACTTAG 1293 28 100.0 32 ............................ AGCTCAATACATGCGTGCACCAAAGCCACAAT 1353 28 100.0 32 ............................ AAGTGAAAAGATAAAAGATAATCACCGTAGCT 1413 28 100.0 32 ............................ CGAGTAAGTGTGAATCCACGCCATTTATTTTT 1473 28 100.0 32 ............................ ACATTTGGTCCAAGGTGGTGATAATTCTTGGC 1533 28 96.4 32 ............G............... TCCAGAGTGTTACAAAACGGCGGAACAGTTAT 1593 28 100.0 32 ............................ AGATGACTTATGTGTCTGATCGCTCCGAAGAA 1653 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.4 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : AAAACTACGTCATCCAAAAGCCATTTTATG # Right flank : TTGACTGTTGGTATATGAATAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCGTCAATCTTATCCATACTCTCAGCAACGAGATAATACTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAGGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 246539-247630 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAPR01000005.1 Pasteurella multocida strain C51-3 PMCNE_contig000005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 246539 36 100.0 30 .................................... TAGAATTATTAAAATAAGCAATTAACAACG 246605 36 100.0 30 .................................... GATAATCATCGTTGGGAAACGCCCGTCTTT 246671 36 100.0 30 .................................... AGGTTTGGCGGCGTATCGTAATGACGATCA 246737 36 100.0 30 .................................... AAGTTAAACAGGTTAGTGAGCCATTCTTTA 246803 36 100.0 30 .................................... ACATAACCAACAGCATAATCAACACAACTT 246869 36 100.0 30 .................................... TGATGACCAATTGGAAGGTCTTGTTGGTAT 246935 36 100.0 30 .................................... TTATCATGGATTAATTGGGCTTTACGTCCT 247001 36 100.0 30 .................................... CAACAGAGCTTGCAAGTATCGCTGCAAAAC 247067 36 100.0 30 .................................... TCTTCGTTTCTTCAACGTTCACCACTGGTT 247133 36 100.0 30 .................................... AGCAAAGAATTATGGAAGGTTTGTTATTTG 247199 36 100.0 30 .................................... TAGATTCACTGATGCATAACCAAATTCTCG 247265 36 100.0 30 .................................... TGTTAGTACGCTTTAAATACTGCAATATTT 247331 36 100.0 30 .................................... CACCACGCCTTTAATAAATCCGAACAACTC 247397 36 100.0 30 .................................... AAATCAATGAAACAAAAGGCGCGCTTGATA 247463 36 100.0 30 .................................... AATTAAGCTTGTCAAAAGGATCATCTTTTT 247529 36 100.0 30 .................................... TGTGAGCAAATTATTGTCAGACCGTTTAAA 247595 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : TAGATAAAAATAATCCAAGTAATGAAGAAGTTAGATATGGCTATGTGAAAAAAGAGGGATTTAATAAAGCAATACATGACAGCTTCAAAGATGTATCAACCAATATAGAAAAACAAAATAATAGAATCTATGATGATAAGAAATAGGAGAATTTTATATGTTAAAGAAATTAATCCTTTTCATGAAAAAATTGAGCTTGTTCTTAGATAAATTAAATGAAGAACAAAAGAAATTGAACCAAAAAGAAAAACCTCAATTTATCCGTACGAATATAAATGGATTGCCATTAAATAGACATGGCGTTGATATGGAGGGAAATATCTATGGTACAACAAGTAGTGAGGAAGAATAAAAAATTATCAACATACTGAACCCAAAAAACATGAAAATTAGAGAATAAATGATTTGATAGATAGGTTAGAAAATGAGCTTTAACGCAAAAAATATGACACAGGGCGGTCAAGTTATTAAATACATGATCGGTATGTTCATGCAGATTA # Right flank : TGTTTCTGCCCTTATCCCTTATAACACAAGGGATAAGGGCATTTTTAATACTCAAAAATTACTTAAATTTACGATATTTAGTAGTCTATTTTTAGAAATTTTTTCTTAAAAAAACAATTGATTTTGTCTAATAGAGATAGCATCTGTTGTATGTTCCCCCTGTTTCTGAGTCACTCTAGGCTAGAATATAGAATAGTCTTTTCGTTTATTTTTATAGAGTATATAAATAGTCTACTTAGAAAAGTAGCATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTTTCAACTTCCCTAATAGAATTTTCATACCTGCAAATTGTTTTTCAGTCACTTCTAAACAGCGTATTGAACCTTCTTCTGGGAGATGATCACTGAGTCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 175869-173558 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAPR01000008.1 Pasteurella multocida strain C51-3 PMCNE_contig000008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 175868 28 100.0 32 ............................ TGTTCAGAAATGAACGGGGTTTTTTATTACTT 175808 28 100.0 32 ............................ AATTGCTTACTAGCTACAATTGAGGTGGGTTA 175748 28 100.0 32 ............................ TCATAGTTAGTTTATGTTAATCTTTATGATAA 175688 28 100.0 32 ............................ TTTGAGCGCGTCTTCAATTGTGATTACATAGC 175628 28 100.0 32 ............................ TTATTGATTAAGTAGTCTGTGATTGCGACACA 175568 28 100.0 32 ............................ CGTGCGTTGTAGTGCGGCTTTCTTTTAAACAA 175508 28 100.0 33 ............................ GCACATTTCTTTAATCTCACGGTTATTAAGTGA 175447 28 100.0 32 ............................ ATTTTTTATTTCACTTGATGATTATCTTTCAA 175387 28 100.0 32 ............................ TTTTAGATACACAACTAGTAGACAAACAGTGC 175327 28 100.0 32 ............................ TTATTGATTAAGTAGTCTGTGATTGCGACACA 175267 28 100.0 32 ............................ CGTGCGTTGTAGTGCGGCTTTCTTTTAAACAA 175207 28 100.0 33 ............................ GCACATTTCTTTAATCTCACGGTTATTAAGTGA 175146 28 100.0 32 ............................ ATTTTTTATTTCACTTGATGATTATCTTTCAA 175086 28 100.0 32 ............................ TTTTAGATACACAACTAGTAGACAAACAGGTC 175026 28 100.0 32 ............................ ATATTAATTTCCTCATGTTGTTAACCTTTATG 174966 28 100.0 32 ............................ ACAAGAGTTCGAGTAACTCCTCTTGTAGCTCA 174906 28 100.0 32 ............................ TGAAAAAAGCCACTGATTCAGTAAATGCTCTT 174846 28 100.0 32 ............................ ATGCAACGTATGACAGGTAAATTAGTAAGTAT 174786 28 100.0 32 ............................ AAAGTGGGTGATCATATTTTGCTATTTTGACC 174726 28 100.0 32 ............................ AATACCCGCAGCGGTTGCAGTTGTAGAAACAA 174666 28 100.0 32 ............................ GACATTGAATGTGATTGACGTTAGGGCCTCAA 174606 28 100.0 32 ............................ TCAATAAAAGGTGAAGAAAAAACATAATTAAT 174546 28 100.0 32 ............................ AAGATATGTTGACAATGGCAACACATTTTTAT 174486 28 100.0 32 ............................ ATTGTTGGAAAGTACCATTTCTTGGCAATCTT 174426 28 100.0 33 ............................ ATTTTGTGCGATGTTGACAGCTTGATAAACTAA 174365 28 100.0 32 ............................ ACAAGCGGATGAAAGAGTACTTGTATATTTCA 174305 28 100.0 32 ............................ GCATTAATAACGGAACACCACAAGCAAGAGCA 174245 28 100.0 32 ............................ AAGTCCGTTAAAAAGTCTGCTTCCGGATTATA 174185 28 100.0 32 ............................ AGTGTCACAAGAGTTCACTTTAAAGAAAGGAA 174125 28 100.0 32 ............................ GTGTTGCCACTTGGCTCGGCAGACGGCAAGTT 174065 28 100.0 32 ............................ AAATGCGGCGGGTCAAAAATGACTAGTTTGAA 174005 28 100.0 32 ............................ AGTTGCGGCAGCAATGGAGTTGATCAGTCAGG 173945 28 100.0 32 ............................ ACATTTTGAGCTAGTCCCGCTTAACCCTCTCT 173885 28 100.0 32 ............................ AATAATCCCACAGCGTGAGAGTGTGCGGTTTT 173825 28 100.0 32 ............................ ACAGTTAGTGCTTGATGAAATCACCGCAAACG 173765 28 100.0 32 ............................ GATGCACAAAGTGCGGTGAAAAACATTTATGA 173705 28 100.0 32 ............................ ATTTCAAACCTTTGAGCGTGAAAGCAGTTGGC 173645 28 100.0 32 ............................ AAAAAACCTTTCGATTAAAGAGGCGAGTGCGT 173585 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 39 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : GGCTTAGAAAGTGAGGCGATTGCTGAATGGCGTTTGCAAAA # Right flank : ACTCATAATTGGAAGAGAACGAGTTCGAATCGTAAACCCTCGCCAGTTTTTAAAACTGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATACATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAAGTGAATATCGACCTGTAATGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 178-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAPR01000009.1 Pasteurella multocida strain C51-3 PMCNE_contig000009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 177 28 100.0 32 ............................ TAAGCCTAAAAATGGACGTGCTGGCATTTTGC 117 28 100.0 32 ............................ GTGAGGCGATTGCTGAATGGCGTTTGCAAAAA 57 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAGCACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAACGCAACCGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAACAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ATGTTCAGAAATGAACGGGGTTTTTTATTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 98966-105355 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAPR01000002.1 Pasteurella multocida strain C51-3 PMCNE_contig000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 98966 28 100.0 32 ............................ GTTTTCATTAATCAGATTGCGCCAGTTGTATT 99026 28 100.0 32 ............................ ACAACATCAGAAAGTGGAATAATTTTTAACCC 99086 28 100.0 32 ............................ TATTGACGAAAGCTCGCTGGATGACTTCATTA 99146 28 100.0 32 ............................ GACTTCTGCGACAACTTCGAAACGGTAAAAAT 99206 28 100.0 32 ............................ TTTTTTGAACTCGTGTTCTTGATAGTAACTTG 99266 28 100.0 32 ............................ ACCGCAACATTTACTCACTTCCCTGAATAACA 99326 28 100.0 32 ............................ ATCAAGTGAACTTTCTCAAGAATATCCTGTTC 99386 28 100.0 32 ............................ GTTTTCATTAATCAGATTGCGCCAGTTGTATT 99446 28 100.0 32 ............................ ACAACATCAGAAAGTGGAATAATTTTTAACCC 99506 28 100.0 32 ............................ TATTGACGAAAGCTCGCTGGATGACTTCATTA 99566 28 100.0 32 ............................ GACTTCTGCGACAACTTCGAAACGGTAAAAAT 99626 28 100.0 32 ............................ TTTTTTGAACTCGTGTTCTTGATAGTAACTTG 99686 28 100.0 32 ............................ ACCGCAACATTTACTCACTTCCCTGAATAACA 99746 28 100.0 32 ............................ ATCAAGTGAACTTTCTCAAGAATATCCTGTTC 99806 28 100.0 32 ............................ GTGGAGTAGTGGGATGTCAATTAGACCGATTG 99866 28 100.0 32 ............................ TGTTCGAATCAGGCAAACCACCGTGTTATGTC 99926 28 100.0 32 ............................ AGTTTTAACTGCTACATCATATTGTGATAATC 99986 28 100.0 32 ............................ AATATCATATTGTTTACCTCAATAATGAGGTG 100046 28 100.0 32 ............................ TCCGTGTTGTTTTAAGATGGCTTTATAATAAA 100106 28 100.0 32 ............................ TTTCTTCTTTCCGCATATCTCACTACTTCCCC 100166 28 100.0 32 ............................ TGACGTGAATCAAGAAATTTACGGATTACCGG 100226 28 100.0 32 ............................ AATATCATATTGTTTACCTCAATAATGAGGTG 100286 28 100.0 32 ............................ TCCGTGTTGTTTTAAGATGGCTTTATAATAAA 100346 28 100.0 32 ............................ TTTCTTCTTTCCGCATATCTCACTACTTCCCC 100406 28 100.0 32 ............................ TGACGTGAATCAAGAAATTTACGGATTACCGG 100466 28 100.0 32 ............................ AAGACATATTAACCCCCTAAAAATAGACCCGC 100526 28 100.0 32 ............................ TGAACCGCTACCAGAGCCTGAATTAGATTGAC 100586 28 100.0 32 ............................ CAAATATTATTTTAAAGGTTATGGCAGGTCTT 100646 28 100.0 32 ............................ GATAGCGTCACTAATAAACTCGGCAAAACCCG 100706 28 100.0 32 ............................ AATGAAGAACGTGCAGCTGATGGCTCGTTCTA 100766 28 100.0 32 ............................ TTCGATCTTCTGACGTGTCTCGCCGTATTTAT 100826 28 100.0 32 ............................ TTTCATTTTCGCGATGACTTTCGTCACGTTTT 100886 28 100.0 32 ............................ AATGTCACTTTGAGGTGCTTCACCAAATTGCC 100946 28 100.0 32 ............................ GAGCGTTTTATCGCCTGTTTTTGTTGTATCCG 101006 28 100.0 32 ............................ AATTTAATAAGCCACTTAATTGTGGCTTTTTT 101066 28 100.0 32 ............................ AAGAATGCTTTTGCAAAAATGGTTGGAGTTAG 101126 28 100.0 32 ............................ TTTTAAATTTTAAAAAATGCCTCTTTCGAGGC 101186 28 100.0 32 ............................ ATCGTCCGTAGTTACAATTAACAAAGCTGTGA 101246 28 100.0 32 ............................ GTGCTGCGCATTTTGGTGTGGTAACTTGGCGA 101306 28 100.0 32 ............................ ATGTTTGCGCGGCTATGCAAGATCCCGCCGTG 101366 28 100.0 32 ............................ ATAATCTCTGCGTTGAATACGTGTTCCGATTG 101426 28 100.0 32 ............................ GTAGATATCCCGTTCAACAAGACTCAAGTACG 101486 28 100.0 32 ............................ ACTTCTACAAAATCAAATGGCTTTCCGCTTTT 101546 28 100.0 32 ............................ GATAATTGCCGTGTTCATTTCACTAGTTTTTG 101606 28 100.0 32 ............................ AGAAGTTATTCAAAAAGGTGAGCAATATATTA 101666 28 100.0 32 ............................ GAGTTGCAGGTTATTGCGCAAACCAAGTAACC 101726 28 100.0 32 ............................ GCAATTAAAAAATCACTATCAATATCATAAGA 101786 28 100.0 32 ............................ TTAAAACTAATCTACCGCTTGAACTCGAATAT 101846 28 100.0 32 ............................ AAGTTGCAGGTTATTGCGCAAACCAAGTAACC 101906 28 100.0 32 ............................ GCAATTAAAAAATCACTATCAATATCATAAGA 101966 28 100.0 32 ............................ TTACAGCAAAAGGGGAAATTAGCTTAAAAATC 102026 28 100.0 32 ............................ ACCAATAAGTAGCGAACTGCTTAACTTGAGGT 102086 28 100.0 33 ............................ TAATGTCATACTATCCCCTACTTCTTCCTCGCT 102147 28 100.0 32 ............................ TTGCCCAAGCTACAAGGGGAGTGATTAAACCA 102207 28 100.0 32 ............................ GATGTTTGGCTTTCGCCTCTTCTAATTTGACT 102267 28 100.0 32 ............................ TTTGATAGTGTTTAAATGCCGTTTAAATCGCT 102327 28 100.0 32 ............................ TGAAAAAGTCATTGAAGATGCTTTTAATACAA 102387 28 100.0 32 ............................ TTAAAACTAATCTACCGCTTGAACTCGAATAT 102447 28 100.0 32 ............................ AACAATAAGTAGCGAACTGCTTAACTTGAGGT 102507 28 100.0 33 ............................ TAATGTCATACTATCCCCTACTTCTTCCTCGCT 102568 28 100.0 32 ............................ TTGCCCAAGCTACAAGGGGAGTGATTAAACCA 102628 28 100.0 32 ............................ GATGTTTGGCTTTCGCCTCTTCTAATTTGACT 102688 28 100.0 32 ............................ TTTGATAGTGTTTAAATGCCGTTTAAATCGCT 102748 28 100.0 32 ............................ TGAAAAAGTCATTGAAGATGCTTTTAATACAA 102808 28 100.0 32 ............................ TTTTTGAAACTCATATCATCCGCACTTTATCT 102868 28 100.0 32 ............................ AGCCAACGCTTTTTCCAAGTCAAATTTTTTCA 102928 28 100.0 32 ............................ TCAAAAAAAAGCCCTCTTTCGAGGGCGGAGTG 102988 28 100.0 32 ............................ ACCAAAGAACGTGCAGCGGTGGAAGAATCAGA 103048 28 100.0 32 ............................ AAGCTTGGCTTGATGCTATGAAAAACTCGCGG 103108 28 100.0 32 ............................ GCCAAAGAACGTGCAGCGGTGGAAGAATCAGA 103168 28 100.0 32 ............................ AAGCTTGGCTTGATGCTATGAAAAACTCGCGG 103228 28 100.0 32 ............................ GCAAGCGGCACACTTGAGATGGACCCGTATTT 103288 28 100.0 32 ............................ AATTGGAGGGGATTCATTTAATTGGGCTGTAA 103348 28 100.0 32 ............................ TCAGTGTAGCATTCTTCACTTGGTTTTACAGG 103408 28 100.0 32 ............................ TAACCTGTCTTCAAATTGTAAGTACATATTGT 103468 28 100.0 32 ............................ ATTCGTAGTACTGCCACAGGAGTTCGAGTAAC 103528 28 100.0 32 ............................ TTTATGGGTTGACATAAGAAAAATAGACTCAT 103588 28 100.0 32 ............................ TCGTAGTTAGTTGTTGTTAATCTTTATGATAA 103648 28 100.0 32 ............................ GTCAACCTTTCTTCAAAGAGTACAAACTCAAG 103708 28 100.0 32 ............................ TAACTTGTCTTCAAATTGTAAGTACATATTGT 103768 28 100.0 32 ............................ ATTATGGGTTGACATAAGAAAAATAGACTCAT 103828 28 100.0 32 ............................ TCGTAGTTAGTTGTTGTTAATCTTTATGATAA 103888 28 100.0 32 ............................ GTCAACCTTTCTTCAAAGAGTACAAACTCAAG 103948 28 100.0 32 ............................ TAACTTGTCTTCAAATTGTAAGTACATATTGT 104008 28 100.0 32 ............................ ATTCGTAGTACTGCCACAGGAGTTCGAGTAAC 104068 28 100.0 32 ............................ TTTATGGGTTGACATAAGAAAAATAGACTCAT 104128 28 100.0 32 ............................ TCGTAGTTAGTTGTTGTTAATCTTTATGATAA 104188 28 100.0 32 ............................ GTCAACCTTTCTTCAAAGAGTACAAACTCAAG 104248 28 100.0 32 ............................ TAACTTGTCTTCAAATTGTAAGTACATATTGT 104308 28 100.0 32 ............................ ATTCGGAGTTCCAGTGGAATACCGTTTTTGTC 104368 28 100.0 32 ............................ TATGGTTATTCCTCCAAGAGCATGGACGGGGA 104428 28 100.0 32 ............................ ACCACGGCGTCGCCCATAAATCCTTATCTTTT 104488 28 100.0 32 ............................ TGCACGCGATAAAACCACGCTTTTTTACTGTA 104548 28 100.0 32 ............................ TAATTCAGCCATATCACCAAGATTGGGAATAT 104608 28 100.0 32 ............................ ACCACGGCGTCGCCCATAAATCCTTATCTTTT 104668 28 100.0 32 ............................ TGCACGCGATAAAACCACGCTTTTTTACTGTA 104728 28 100.0 32 ............................ TAATTCAGCCATATCACCAAGATTGGGAATAT 104788 28 100.0 32 ............................ ACTTTGGTTTTCTGAAATTGAGCCATTCCCAA 104848 28 100.0 32 ............................ TAAAATGCACGCAATTGTAGTTAAGCGTTTCG 104908 28 100.0 32 ............................ CCAAACGCTTTGAGATTTCAATAAATGTCGCC 104968 28 100.0 32 ............................ TTACAGCAAAAGGGGAAATTAGCTTAAAAATC 105028 28 100.0 32 ............................ ACTTCGGTTTCATTTGTTTTCGCAGAAAGCAC 105088 28 100.0 32 ............................ TGATTTTGAGCGCGACGACTATTGGTGGGAGG 105148 28 100.0 32 ............................ GGGCTCATCGGTATTAATCTCGGTGCAAGCGG 105208 28 100.0 32 ............................ TTTTTTGTTATATAGATATGCTACAAATGACC 105268 28 100.0 32 ............................ TATACCAATGTTAAAGGGTTAACTGTGCTCGA 105328 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 107 28 100.0 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGGCGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAATGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTTGATTAGACTGTTTTA # Right flank : CGTTTCCGTCAGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //