Array 1 43440-41969 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGPV01000001.1 Moraxella catarrhalis strain NCTC4103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 43439 28 100.0 32 ............................ ACTGCTAAACACCTGCTAGTCAATGAGCTAAC 43379 28 100.0 32 ............................ ACATTGGGGGCATAGTCCAACTTCATGGCATC 43319 28 100.0 32 ............................ TATTTTCTAGCCTGTTAACTCCTATAATAAAA 43259 28 100.0 32 ............................ CTCCGCATTTAAAAAGTTCTTCGCATGCGAAT 43199 28 100.0 32 ............................ TGCCAACAGAATTTTTTTGCTTATATAGTTAT 43139 28 100.0 33 ............................ AATCTAAACAAATAAGCAACAAGCAAGCTAGTA 43078 28 100.0 32 ............................ TAAAACGCGAGCTAAAATGCCGCGGGTACGAG 43018 28 100.0 32 ............................ TGCTAATTACTACAATAAAAAATAATATTAGC 42958 28 100.0 32 ............................ GCCTACCGTTTTTTTCAGGTGGAATTCGCGGC 42898 28 100.0 32 ............................ CATTTTTTTCTTATGCCATTTTGTAAAAATAC 42838 28 100.0 33 ............................ GTAAATGCCGCGAATGCCGCATTTTCCCTGCAT 42777 28 100.0 32 ............................ GCTAACGTTCTAAGCGAGACTGTTGATAGGTC 42717 28 100.0 32 ............................ ATCACGACGGCGACACACTTGTACAAATGCCA 42657 28 100.0 32 ............................ ACTTATTTTTTTAAAAAGTGGCATGGCGGGAA 42597 28 100.0 32 ............................ GCTCACCACAGCCACCCAAGAGCCAATTTCTC 42537 28 96.4 32 .............T.............. TGTAGAAGACGCGTATTATTGTGAGCTTAGCG 42477 28 92.9 32 .............T.....A........ ATTGGTACAATCTTAGCCTCACACCGCTATGA 42417 28 96.4 32 .............T.............. GTACTTGCCAAGTGCAATATCAGTCGTTAAAT 42357 28 92.9 33 .......G.....T.............. ATTGAACAAGCAATTCATAAAGCCTTACACTAT 42296 28 96.4 32 .............T.............. TAAATGGGGTATACACCGTTATGGTTTATCTT 42236 28 96.4 32 .............T.............. ATAACCTGCTAAAGTCGTTGGCTTATTGGTAA 42176 28 96.4 32 .............T.............. ATTAAGGGCTGATTGGCGTGGTGCAAATCACC 42116 28 96.4 32 .............T.............. AATACAGCTATCCAAGTAACTAACCACCCACC 42056 28 96.4 32 .............T.............. CACCGCCGCGTCGTGATGATTACGACAGCCCA 41996 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 25 28 98.3 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : CGCATTGCGGCTTGGGTGATGGATGTCCCTGTGCCAAGCAAGATAACTGTGGTATTGGCGATGGGGATATTATAATAGTGGTTTTCGTATTTGGTTTCGGTGAGATACAGGATGCGCCCGTCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATACATTGGCGCGCTTGGAGTGCAAAATTGCCTTAAGATCCGTGGGTTTGAGCGTATCCATGACGTCAATTTCCTTAATGATGAATTTAATTTAATCACACCCATTATAGCCTGTCAAGCGATGATGCGACCAAATTATAAGCTTATATTATCCATCTGCCATATCAGTTATGCTATACTAAATTTGCCATCAGATGATGATGGGTGTAAAAAAACCTTTATTTTTTCAACTATTTAAAAACTTAATAAAATCAATAAGTTATAACTAGTCAACTTTTGATTGGATAAAAAGGGTCAATCCATCATAAATGGCTGTTATTTCTTAATTTTTTCGGTTATAATTACA # Right flank : ATTTAATGGACAAACCAAAACTAATTCAACAATAGATCAGAACATGACCGAAAACAGGACAGAAAAAGGTATTAGTAGAAATATTATGCTAGTATCTTCTGGGAGTTCTGAGATGTCAGGCGCAGTAGAAGTTGGAAAGAGTCAAGAAATTAACACTAATACAGGTTGGACTACCAGTATATCTTTAGATCATGTTGGCAAATTAGATCATGATATTATGGAATTTAGAATGAAGCAGCCCGAGGAGTATGACAAAGCATATCAAGAAGCAGCTAAAAATTTAGGTATAGACCCACAACAAGATTATTTGCAATTAGAAAGTACGGATAGGCTGAATATGCGAGATGCTTTAAATCCAATCGCTATGCAGAAAAACCAAACATATCTCGGACAATCCAAACCTACAAATGGACTGCCGCAGAACATCGGTGATGTGGCGGCGAAACATTTAAAAAAAATAATAATGAAATAGAGATGCACTATCAAGACGCTATACAGGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : CTTCACGACCGCATAGGTCGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //