Array 1 7796-8155 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPUG01000015.1 Anoxybacillus sp. P3H1B AT864_contig000015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 7796 30 100.0 35 .............................. CTCTCATCCTCCCTTTGGTATCGATGTCCCCACCA 7861 30 100.0 35 .............................. AACGAAGGGAAACTTGAAGAATTCAAAGCGAAGGA 7926 30 100.0 35 .............................. TCGGTGTCATCGTATTCAATAATTTGTGGAGTTCC 7991 30 100.0 41 .............................. TTGGGAAAATGTCCCATACGTTTTACATGAGGATGGCTCAA 8062 30 100.0 34 .............................. GCTTAATCGGCTACACAATCGGGAAAGCCGACGC 8126 30 93.3 0 ............................CG | ========== ====== ====== ====== ============================== ========================================= ================== 6 30 98.9 36 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : TTGATGATTCGTTTGAAGCAGCGGTTCGTTACCACGATCAACTGCTGCATGCTCTTCAGAAAAGAGGCTTTCCTTTCCATGATATTTTATATACGCTGCTGTTTTTAACATGTGATTTTCTGCCGGGGCTTCGTCTTATTCCGTATGGTCTATACGATGTAAAGCGCAATGACATTTTGCTCCCGGCACAGCTGTTATCCGACTGCCTCTTGCAGCATTAGCCTGCATTTTATGGTGACTCTTACATGTCGCTTGATTGTGGTCCTTTTCTCATCTGGCGGACTCGCATCAGAAAAAAGGGCGATTGATTATGAAAAAATGGTTAAGACGGAGTCGTCGATCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACATATTTCTAGTAGCCAAAACTCCTACAGCGATCAAGCAAAGAAAGTGTTGATCGAATTTTAAGACAAGCTTATAATAACATTGTATCCATTTTCCAAATGCTGATTTCATCATCATTTTTGGGG # Right flank : GGCTCAAAAAAATCTCCCACCTCTGCAATGCGGGTGGGAGAGAGTTGTTAAAGGGGGGACTTAAAGGTCGAAATCGTTTGGATTTTTGCCGATTCGTTTGTTTTGGTTTAATGAGTAAATCCGTTCCATTTCTTCAGCTGTCAGTTCGAAATCAAAGATTTCGGCATTTTCTTTTATTCGTTGAGGTGTGACGGATTTCGGAATTGTGACCACTTGATTTTGCAGGTCCCAGCGCAGAATAACCTGTGCCGGTGATTTGCCATATTTATTGGCAATGTCGACCAGAATCGGTTCTTCTAGCAAAACGCCGCGCATGAGCGGAGACCATGCTTCCAGCTGAATCTGATGCTTTCGGCAAAAAGCATGAAGCTCTTGTTGTGTCAATCGAGGGTGATATTCCACTTGATTGACCATTGGTTTAATTTCGCAGTCGGTCATTAAGTTCTCTAAATGATGAATGTGGAAATTGCTCACGCCAATCGCGCGAACAAATCCCTCTT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 60158-60587 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPUG01000013.1 Anoxybacillus sp. P3H1B AT864_contig000013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 60158 30 100.0 39 .............................. TTGGCTAGATATTCAATATAGTCGTGAAACTCATCTAAA 60227 30 100.0 36 .............................. ATTCAACGAGCATTAGATGATTTAGCATTAGGAGGT 60293 30 100.0 35 .............................. AAGTAATCCGCCATGTATTCAATCGAATATCCATC 60358 30 100.0 37 .............................. CTTGTTGTATACCATCGGCTGGAAAACGATCATTCTT 60425 30 100.0 35 .............................. TCGTCGAGTTCACTTGCTTGAATTCGGCCATGCGA 60490 30 100.0 38 .............................. ACGTGCAGCGCAAATACGTGAATCAGATTCCGCAAGTG 60558 30 90.0 0 .....................A.C.....A | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 98.6 37 GTTTTTATCTTACCTATGAGGGATTGAAAC # Left flank : ACATACGAAAACAGGTATGGAAATAAGAGAACTCATTTCTTTTCTCCTTTTGACGTTGTGTTTTCAGATATGGTTGAGAAGAACTTTTGCAACAAGTTTCAGTCATACTTTCAACAAGAGCCAACTGAGCGGGTTACAATAAGACCTGTTCGTGTAACAGGAAGGGATAAAGTCATTACAAGTTTTAAAGGTTTCCTGATCAATGCGTGGAATGGGATATATGAAATTGAAGCGTCTTATGATTACATAAATTTTATGTATGATGTTGGGATTGGTTCGAAAAATTCTCAAGGATTTGGGATGTTTGAAATTTTGGAATAAGCCTATTTAAGTTGTCGTCGCTCTCCAATAGCGCACAATTCCTAGGGGATCGACGACAGTTTTTATTGATGAAATCCCTGTATTGATGAAGGGTTCAAACAGTTGATAGGCTTTTACGTTGCGTTTATAATGGTAGTGTAACTGCTTTCGGAATGTTGATTTATTAATGTTTTTTTGGG # Right flank : ATTGATTTGAGGAACATTTGTGTAAAATTAGCACGTTATTTTGGAACAAAATGATCATTTTTTGCAAATTCTAACGAGATTTTGTGCATTACTCTAGCGAAAATATGGAACATTGTGCAAATTTAATTCCTTTTGTTTGAAGAAAGACCATTTGATGGTTTGATATAGAGCTTCTGCGGACATGTTTTCTGGCGAAAGGGGCGAGTGGGAACTCTTTTCTCGCTAGGCCATAAGCCTAACATGTCCGCCATTCCATGTAAAGCCCGTATGTCTAATTTTGTGATTATATTCAAAAAATAATTAGCTAATGTGTAAAACAAATAATTTGCAAATTTACAAGATTGTTGCTGTAGTATGATTTGGTGCGTGTCAACTCAGTAATCAAGGATGTCATAGTTCCCCTGAGATTGTTGCTGTGGTATGATACCATATCATGAATCATCGAGATGTCGTCAGTCATAGTTCCCCTGAGATTGTTGCTGTGGTATGATGATTAACAG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 60976-61803 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPUG01000013.1 Anoxybacillus sp. P3H1B AT864_contig000013, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 60976 36 100.0 30 .................................... ACCATATCATGAATCATCGAGATGTCGTCA 61042 36 100.0 30 .................................... GATTAACAGAAAAGGATTTACGTCTTATGA 61108 36 100.0 31 .................................... TGAAGGTAAAGTCATTCCGGCACCGGTCTTG 61175 36 100.0 30 .................................... ATATTCCTCGACACACTTTTCAAAGCTTTC 61241 36 100.0 30 .................................... TAGGTTGGAGAGAAATAAAAGCTGAAGAAA 61307 36 100.0 30 .................................... GACTCCACTCCGATTCATCATCATCAGAAA 61373 36 100.0 30 .................................... CAAATAATAAGGATATTTTTAAGACCCACA 61439 36 100.0 29 .................................... CGTGCAATACTCTGTTTGCATTGCGCTTG 61504 36 100.0 30 .................................... ATATTGGCGTAAGGAAATACCTCTAAATCA 61570 36 100.0 30 .................................... TTAGTGTTATACCACATAAATCTAGTGTCG 61636 36 100.0 30 .................................... TCTACCATGTCAACTTCAACACTGTCATAG 61702 36 100.0 30 .................................... ACAACAACAGTAATAGCTTCAGGCTCGATG 61768 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 13 36 100.0 30 GTCATAGTTCCCCTGAGATTGTTGCTGTGGTATGAT # Left flank : ATTCGGCCATGCGAGTTTTTATCTTACCTATGAGGGATTGAAACACGTGCAGCGCAAATACGTGAATCAGATTCCGCAAGTGGTTTTTATCTTACCTATGAGGAACTGAAAATTGATTTGAGGAACATTTGTGTAAAATTAGCACGTTATTTTGGAACAAAATGATCATTTTTTGCAAATTCTAACGAGATTTTGTGCATTACTCTAGCGAAAATATGGAACATTGTGCAAATTTAATTCCTTTTGTTTGAAGAAAGACCATTTGATGGTTTGATATAGAGCTTCTGCGGACATGTTTTCTGGCGAAAGGGGCGAGTGGGAACTCTTTTCTCGCTAGGCCATAAGCCTAACATGTCCGCCATTCCATGTAAAGCCCGTATGTCTAATTTTGTGATTATATTCAAAAAATAATTAGCTAATGTGTAAAACAAATAATTTGCAAATTTACAAGATTGTTGCTGTAGTATGATTTGGTGCGTGTCAACTCAGTAATCAAGGAT # Right flank : TACGTGTGTCAAAAAGCCTGTAATTTCAAGGATTACAGGCTTTTTGATTGCGGAAAAACGGAGCGGTAGATGTTAGCATTTTGAGTATTGGCTGTGTTTTTTTAAAAAAGAGTTAGTTGTGTTGTTTTAAGCGTTTTCTCTTTTGGAGTTGCTTCGCCCAATAGAAGCTGCATTTTTGCGTATTGTTTTTCTGTTACAATCATCGCCCGAATGGATCCTTGAGATGGTAAATTCTTTTTTAATCTTGCCAAATGTTTATCAGCTGCCTCATGTCCGTTGCAAATGCGGCTGTAGACTGAAAACTGTAGCATATCATACCCTTCGTTTAATAAAAATGTGCGGAACCGTCGATAGTCTCGCTTCTCCCTACTTGTGAGAACTGGCAAATCAAAAAACACAAGCAAGCGCATAAAATTACTCATATACGTGTAATTGGAGCGGGAGAAGCTTAGGTAACTTTAAGCACGAAGGGTTTTGCGTTTTGCTAGCGGTGACGAAGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATAGTTCCCCTGAGATTGTTGCTGTGGTATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 66969-67195 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPUG01000013.1 Anoxybacillus sp. P3H1B AT864_contig000013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 66969 30 100.0 35 .............................. GCTGAAGACAGATGACGGAAGCTGTCTTCAAACAC 67034 30 100.0 36 .............................. GAACTATAGATGAAAAAGATATTCCAGATCACGATA 67100 30 100.0 36 .............................. TCAGCGATTTCCTGTGCCTTTTTGTATACCGATCGG 67166 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 36 GTTTTTATCTTAACTATGAGGGATTGAAAC # Left flank : TCATAGTAACCCTGAGAGTGTTGCTTTGGTATGATATATTTTCATTTTAAATGGTTTTTTGTAAAATTCAAGGGGTAAGTTAATAAATTTGAGGTGTATTATGGGAGAGAGCCGAACGAAAGGCTGACAATTCAACCGATTGATGTTAGGAAGCGCGACAAAGTTGTGACGATGTTTAAAGGGTTTTATATTACAGCTTGGCAGGGACAGTACCGCCTTTTATCCTCGCCGGAAAATTTAACTTTTTTATACCGCGTAGGCCTCGAAGGACGAAACTCGCAAGGATTCGGCATGTTCCGCCTCCTTTCCGAGAGGTAAATCTTTTTCTCTTTTTGTCGTCGACCTCCAATCATGCAAAAAGTCCGGGGGATCGACGACACTTTTTTATCCCGAAACATGCCTATCATATCAACGGTTTAAACATATTGATTCAATTTTCAAATAGTTGTATAATCAACCTGTATTTGTTGTCCATCCTTTGATTTATCAGTGTTTTTTAG # Right flank : CCCTAACAGGGATAATATAGAAGGAACGATCTTTTTTGATTGTGTGGGGAAAATAGAAGAATCTCTGATTTCCTTAAAGCTTAGCTGTCGTTATTTCGTGATAATCGGTTTACCGCTTGCCGACCGATTTGCTCATTTTAATACATCCATCGAGAAGTCTCCCGCCTCTAAGCGAAGTGGAGGTGGGGGAGGTCATCAGACCGCTTGCTGTTCGATTCTTTGCTGTGTGCTTTCGTGACAGAGACAAGTCTGTCACCCTCTTCCGATCTTCGGTGTTCTAGGCGGCTTCATTGTATGGATGGCTCCGCCGCCCTTATTTTGTCATCGTCTGCCGTTTTTCCGCTCCTGCTTTATGCGAATCTGGAAAGGAGCGGATCTTTTCTGTTTTTTAGAAAATTTCCCGTTGCGCTTTCGACTTTCACATGTTCTAATAGGAATGATAGTAAAGCGAATGATTGGTTCGCCGATTTTGCATACAATGGAGGGCTGGAAGTTGAAAG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 14371-14798 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPUG01000032.1 Anoxybacillus sp. P3H1B AT864_contig000032, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 14371 30 100.0 37 .............................. AATAGTAGATCTTTTCCTTCTAAGCCTTTTTCTCGAA 14438 30 100.0 35 .............................. AAGCAGCGCTCATTAATCGCATCGGCCTCACCAGC 14503 30 100.0 39 .............................. ATAGAAGGTAAATTTCCTTTTTCGATTTTACTGATGTAA 14572 30 100.0 36 .............................. TCTGAATATGGTCGGTTTGGGTGAAAAAGTATCTAC 14638 30 100.0 36 .............................. CAGAAGCAGTGAATAACGCGAAGCGGCTTCACACGT 14704 30 100.0 35 .............................. AAATCTAGATCATACAGGAAAACCGCCTTTGCCGC 14769 30 83.3 0 ................CA...A..AA.... | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 97.6 36 GTTTTTATCTTAACTATGAGGGATTGAAAC # Left flank : GATTTTCGTTCTCATATTGGATACAAAGAATTTTGCAACTTCTTGAGGGCGCTTCCTATCATATCATGAATCTTTCATGGCTATAAATTATTATAAGTGAACAAGTAGATAGATGCAATGTGACATGTTAATTTTGACATAGATAGAGCGTTTGGACTTTTTCTACGGTCGGGCAGACCCATAGCGCCGCTTTATGGAAACGTGGGCGGAGCTGAGGATGGCGTTATTTCCATTTTCGTTGACGAAAAGGCAAGCCCGAATCTAACAAGCTTCGGCAAACTCAAAAATCCTCATTTGTTTTCCTAAAAATGACGTATGAACGAAAGAAAAACTGTCGTCGACCTCCAGTAGCGTCAAAAACCCAGGGGATCGACGACAATTTTCTAACCGCCAGAATTCCTACAGCGATCAGAAAAAGAAGCTATTGCTCGAACTTTGAGATACGTTTATAATGACATTGTATCCATTTTCCAAATGCTGCTTTTATCATTATTTTTGGG # Right flank : CATTTTGCACGCACAGTGTTTTTACTGCCATCGACGGCGCGTCAATTATAGGGCTGTGGTGATTGAAATGGCTTTAAGAAAACACATCAGGAAACTTAAGATCAAATTTTATGTTATGCGGTAGATATATGGGGTCTTCCCTCATTACATTTACGTGATGGGGGATAGACCCCATTATTTGTTTATTATCATATAAGCCTCAAGTCTTATTCGAATATACATTTGAGGTCCATTTTGGAACATTCCCTTTTACTGTATTCTTACAATAAGAAAAGGAAGAGTCGCTTGATCTTATTCCATCCAAGTTGTAGATCGAGACAAAATGTCGACTCTGCCATTAAACAATGAAAGGCGACTGAATCATTAGAGCATGTGAAGATTTATCCGTGAGGTTCAGCTGTTTTAAGGGCGCCTGAAAAAGTTGATGGTTCGAAGTAGGGTGAAGAAACTGATGTAAAATTTAATGGGAAAGGGAGGAAAAACATTGGAAAAGAAAATTC # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 380676-376090 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPUG01000009.1 Anoxybacillus sp. P3H1B AT864_contig000009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 380675 29 100.0 37 ............................. AATGTTTGACTCCGCTTTAGTTCGTGGGGCTATCGCT 380609 29 100.0 36 ............................. TTCGTCAATGGTTTCACATACATGTATTTCATCATT 380544 29 100.0 37 ............................. ATTAGAAACATTTATCAGCTAGTGGTAACACATTAGC 380478 29 100.0 38 ............................. ATGGACTAACCCTCAAGCTAACGTAGTCGGTGCTCAAA 380411 29 100.0 36 ............................. AAGTACCTTCATTTCTTACACGTTTGAAACCTATCT 380346 29 100.0 36 ............................. TGGAAAGACAAATAAAAAAGACTTGTCAATATGACA 380281 29 100.0 35 ............................. AGAAATGAATATAGCGAATGTGTTAGACTGTTAGG 380217 29 100.0 37 ............................. TAGAGAGGTTATGAGCAATACGATTAGATTGAATTAC 380151 29 100.0 35 ............................. GATAATTTCATCTTGCATCATTTATTCCTCCCTAA 380087 29 100.0 36 ............................. TCTAGTATATTTGCTTCGTCAGGTGGTACAGTATAT 380022 29 100.0 37 ............................. CGAACCTATCAAGCGAGTGACTTTGCGGATTATTTCG 379956 29 100.0 37 ............................. GTTAGTTTAGCGGAATTTAAAAAGAGATTCCCGATTT 379890 29 100.0 37 ............................. GGATTACATGGTCATGCATATTTGGTGCCGCGTTGGA 379824 29 100.0 37 ............................. AAGCTTTCAAACGATGGGTCACACACGAGGTTCTTCC 379758 29 100.0 36 ............................. GTTCTATTTTGACGGTATTGGAGATGAGAAAAAATG 379693 29 100.0 34 ............................. GAGATAGCCTCCTTATAGCAGATCAAGAGGGCGT 379630 29 100.0 36 ............................. TCCTCATATAAAGGAAACACGTAGCAACCATCACTA 379565 29 100.0 35 ............................. CCGCAAGAGACGGCTGATTAAGACCGCGCTTGATC 379501 29 100.0 35 ............................. CTTGGAGCTTGAATTTCTAGCAACTCTGTAATTTG 379437 29 100.0 37 ............................. AAGCTAAAAGTAAGTTGGAACGCAAAAGGTGGTATCT 379371 29 100.0 35 ............................. TCAACGACATCTTAACGATGCTTGGAAAAGAACCG 379307 29 100.0 36 ............................. GTTTTTTAAAGATGGCCAGCAACAACCCGGAACGAA 379242 29 100.0 36 ............................. AGAGCATGGAAGAACGGGCAGCACAGGAGTTTGACC 379177 29 100.0 36 ............................. AGCTTTGCGCAGCTTGGCCAAGCATTGGCAGAACTA 379112 29 100.0 34 ............................. GAGGATAACATTAAAACGAAGGGGCCGACTTACA 379049 29 100.0 35 ............................. TTGAATTTTATTATCAAAAAAGATGGAAACACATA 378985 29 100.0 36 ............................. ACATTGGAAAATATGACATCAATACAGGAAAGCATT 378920 29 100.0 35 ............................. GGACAAGGTTTTGATGGGGTGGAAAAACTGGTTCC 378856 29 100.0 35 ............................. ATGAAAAACGACAGAAAACACTGGGTAGTGATGTT 378792 29 100.0 35 ............................. TCGTTCTATGTGTACAACGGATCAATACGATTACT 378728 29 100.0 37 ............................. AATGAAAAACGACAGAAAACACTGGGTAGTGATGTTC 378662 29 100.0 36 ............................. TTGGGAAAGTAGGTGTTATCCGTGGCAGTGAAACCG 378597 29 100.0 36 ............................. AGGATACAGCCCCGATCATATATACGAGACTGGCAT 378532 29 100.0 37 ............................. AAATGGGCTTTTTTATTTTGCTCGAAAGGGGTTTAAC 378466 29 100.0 35 ............................. TTTAAATAACATCGTGGCAGAACATATAGATTCTC 378402 29 100.0 36 ............................. TTGTGGTTTGTTTATAAGCAAAAAGAAGATTATTAA 378337 29 100.0 36 ............................. TTTTATTCCTTATTATAGGTCATCCAAATCGTTGGA 378272 29 100.0 35 ............................. TTGTACAGAAATCGCTCAAAACATGAGTGCTTCTT 378208 29 100.0 39 ............................. CTGGAATCTTGAAGTTTTTCTTCTCCTCGATGTAGATAC 378140 29 100.0 35 ............................. AGTAGATTTTCTACTAGGCTATTTTGATAGAGTGG 378076 29 100.0 35 ............................. CAAGTACTACAACGCATCAAGTACTGAGCCTTCTC 378012 29 100.0 38 ............................. TGTATATGAACCTACTTCTTGCGGTGAAAGTAACGCTA 377945 29 100.0 36 ............................. GTGTATGACGTTCCATCTTCATCTGTACCGCCGATA 377880 29 100.0 36 ............................. CTGTTGAAGATGCTAGCAAAACACCTGCAGCAGAGG 377815 29 100.0 37 ............................. AGAATATTATGAGGACTTGGTTGAATTCATCGGTGAC 377749 29 100.0 37 ............................. AGGGGGAATGACTACCCATCGACCCTCTTCCGGAACA 377683 29 100.0 38 ............................. CCGCTTGATACTGAATTGGTCGGAGACGGCGAAGCACC 377616 29 100.0 35 ............................. AAACAACGATGAAGAGCAAGGGGACTTTGAGAAAG 377552 29 100.0 36 ............................. CCACAAAACGAACCAAGCAACGCACAAGGGTTGCAA 377487 29 100.0 35 ............................. AAGTTAGGCATTTTGAAATTAGAAATCGAGTTCTT 377423 29 100.0 35 ............................. TCGTCAAACGACTGTCGACAATATTGCTTCACATA 377359 29 100.0 37 ............................. ACAATTTGGAGTGCACGCTTACTTCAAAACTTGCAAA 377293 29 100.0 37 ............................. AAACACGAACATCCTTCGAGACATCGACATGAAAAGA 377227 29 100.0 36 ............................. ATTTAGTTGTAGTACGTTCTCCTAAAGAGATTTTTA 377162 29 100.0 35 ............................. CGACATGCAGGACATTCAACGTCAAAATGTCTTTC 377098 29 100.0 36 ............................. TCGTCAAGATTATGCATATTTTGCTTAACACGCACT 377033 29 100.0 36 ............................. AAAGATGTCAAGGGAATTGTTAAAATTAAGGGCATC 376968 29 100.0 35 ............................. ATTTTTCTTACATTGATGAGAACTTCAACTATATC 376904 29 100.0 35 ............................. ATTTTTCTTACATTGATGAGAACTTCAACTATATC 376840 29 100.0 35 ............................. AGGCAGAAAACGAATCACGTTCAAAAATGGCTCGC 376776 29 100.0 39 ............................. CCGTAGCCGCTTCGGATCAGGAGTTATTTCATTCGCCGC 376708 29 100.0 37 ............................. TTTGAACACGCAGCATCAGCAGCATATACTTGAATCG 376642 29 100.0 37 ............................. TCGGAACTTGTTGCAGCAGCAACAGATGTCGCGCCAA 376576 29 100.0 36 ............................. ATGGCAATGTGCCTTCTTCATATATGAGACTTAGTT 376511 29 100.0 35 ............................. CCTCCCCCGCCCTTTTCATATTTATTAACATGAAT 376447 29 100.0 37 ............................. TTTTCTGATGAAGCAATGAATGCTACAAAGTCTGACT 376381 29 100.0 38 ............................. TTAAAATAATGCGGGTTCTGCGCCAATTTCGTTTTACG 376314 29 100.0 36 ............................. GCAGGTTGACACTCTGATCGAACTTCAGTCTTATTC 376249 29 100.0 36 ............................. ATAAGATAGCGAAAGAGTTAGGGCTCAAAATTGAGG 376184 28 79.3 39 ..................A.-....TTTA CACTTGACCACTTTGTGTCAATATTTTCACAACTTTATC 376117 28 82.8 0 ....................-....TTTA | ========== ====== ====== ====== ============================= ======================================= ================== 71 29 99.5 36 GTTTTATCTGAACTTAGTGGGATATAAAG # Left flank : ACGAGCCATATAAACCGTTAAAAGCGTGGTGGTAAAATGTTTGTGATTATTACGTATGATGTGGGGGAGAAACGGGTAAACAAAGTATGCAAAAAACTTAGGGAATACTTAACATGGACGCAAAATTCCGTGTTTGAAGGCGAAATTTCTAAAAGCTTACTTTTGAAATGTTTAAACGAAATCGATCAAATAATTGATGAAGATGAGGATTCGATTTATATTTACGAAGTGGCTAATCCGAGAAATGTGAAGAAGAAAGTATTCGGACAGGAAAAAAACTTTGAAGAGCTCTTTTTATAGTGCGCTTTTGCCAACTTGCCGTAAACCGCTGTTTTTGAAAAGTGTGTGGGAAGGCTTGATAAATCAATAAAAAGCCGCTATTTTTGATGTGAACGCCCAACATAACTACCACCTTACTGCAAAAAACAGATATCGTATGTGTATCAACCCTAGCGATAAATGTTGATACATCAATGGATTGCTTCTTCTATAAAACAGGG # Right flank : CTATTAATTCCCAAAAAATAAGAGGAGCATTTTTAGAAGAAGGGATGACTTAAGATTTTCACCTTTCCTTCCTAAGACGATATTACTGTTTTTGACAAATCTTTTTGTTTAGGTTTTCATTTTAAATGATTTGTATGATTTGGAATTTTAAAAAAATACTTTAATTTTCTCATCAGCATGATCATATTCTTTTTTTGTTTTTGTAAAAAAACCTATAGATAGACAGTTCTAAGAACATCACACACCAATGATCTTTTATTGTCTATCTATAGGGAAGATGAACATACTAAAATATTTCTCTATCTCCGCTTCTCTTTTTCATTTCGATAAAATTCGTGGAACATTTTCATTAATGCTCGCTTTTCGATGCGGGAGACGTAGCTTCTGGAAATGCCGAGCTCCTTGGCGATTTCGCGCTGGGTTTTTTCCTTTTGCAAATCCAGTCCAAAACGGCTGATAATCACTTCTTTTTCCCGTTCATCCAGCACATCAATGTATTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 33172-35528 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPUG01000027.1 Anoxybacillus sp. P3H1B AT864_contig000027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 33172 30 100.0 36 .............................. TTTGCCAACACGCCTTCTGTATTCCACTTGTTTTGT 33238 30 100.0 36 .............................. CAGGATCATATCACGCATACTCTTTGACCCTTTCGT 33304 30 100.0 37 .............................. TCTCAATAAATGCCCCTGACAAACCACCTGCAAATCC 33371 30 100.0 36 .............................. TTCACCTGCTACAATAAACGAATATCACTAAGTTGT 33437 30 100.0 35 .............................. TTGTTTCCCGGCGGCGCACCGCCACCTCTATTGCC 33502 30 100.0 39 .............................. CGCAATACACTGCCGTCTCCCAATGTATATGAATAATCG 33571 30 100.0 38 .............................. CTAATTGAACCCGTGCCTGTTGGATTATCGTCCTTTCC 33639 30 100.0 35 .............................. AAATAGGCAGCGGAACATACGGTATTCCTAGATGG 33704 30 100.0 35 .............................. CCTCAATTGCTCTTTTTCTTCTTTAGATAACCCCA 33769 30 100.0 37 .............................. TTCAGAAGAGAAACGTTAAATCAAATGAAGCGTGAAT 33836 30 100.0 36 .............................. ACGCAATCGGAACATAATTGACCGTATGACATTCAG 33902 30 100.0 36 .............................. TCAACTAAAAGAGGGTGTTATTCTTGAACCATGTGC 33968 30 100.0 37 .............................. CCTCACCGAACTCTTCAACAAATTCGTCGGCAGCAAA 34035 30 100.0 35 .............................. GGAATCCATTCTCCTTCGCTTGTCATGAAAAACGA 34100 30 100.0 36 .............................. TCAAACGCTCCTGCAGGTGCCTTCTTGGCTACGTCT 34166 30 100.0 37 .............................. CATTCCCATATCGAGACACGTTGGTTGTTTGAACTGC 34233 30 100.0 37 .............................. TTGATTTGTAATCTGCAACATGGAGGGATTTGTTCGT 34300 30 100.0 37 .............................. TCTGAACACTGCTTGAGGATATGCAGAGATAACTCGC 34367 30 100.0 35 .............................. TACTTGAGGTCTTACCGAACGGTATCAAGGAAACG 34432 30 100.0 35 .............................. TTTTGCTTTCAAGAGTTAAATCGTAAAGATCGCCC 34497 30 100.0 37 .............................. CCATTGCAGCTTCAAAAAGCTCCCTGTAGTGCTCGAC 34564 30 100.0 35 .............................. TAGTGTATGGAGAGCCTTAAAAAGACAGAATTTGT 34629 30 100.0 35 .............................. TCAGTTCTTCCACGGCTGCCGGCGTCCCTTTGTGC 34694 30 100.0 36 .............................. TCCGACCGCTCGAATCAAAATTTCCATCCGGCCGCC 34760 30 100.0 40 .............................. AAAAAGAATGGATTTCGGCATATCAAATTGCATGCCTTGC 34830 30 100.0 36 .............................. TAAAAAATTTTTGACCCGCCCCTCCCCGTATATCCT 34896 30 100.0 38 .............................. ATGCGCACGCGGCAGGCTTTGAGGATGTGCAAACATCT 34964 30 100.0 36 .............................. GATAAAGAAGAGAACGTGGTATTAGACAATTCTTAT 35030 30 100.0 38 .............................. AATGTGGGAATGCAGGCGGGAATATGCGCGAGCATGTT 35098 30 100.0 39 .............................. TGAAGTAATCAAACCTTTCCGTGATAAACATACCGGTGA 35167 30 100.0 37 .............................. ATTGATGCGTTGGCGCTCATTCTCCACTCTCGCACGC 35234 30 100.0 35 .............................. CGGACTCTCCCCCCAGGTTCTAATCCACCATTTCT 35299 30 100.0 36 .............................. ACAGTCCAACATCCGTTGTAGTCTTCAGCCAGTTGA 35365 30 100.0 35 .............................. TTAAATACATGAGAGAAAAAGGATTTAAGAACGGA 35430 30 100.0 39 .............................. TTGCAGAGCCGATTTTAAGAGGTGTTCCGTTTAACGCGC 35499 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 36 30 100.0 37 GTTTTTATCTTAACTATGAGGGATTGAAAC # Left flank : AAAGAGTCATAGGATTTGATCTTTTGTCTACACGCGAAAGACAGAAGCGAAATAAGGCTTCTGTCTTTTGTTTGATTATAGGCAAGTTGATTTTCTGCCCTCCTCCATTATTGTTCCGTTTTTTCTGTCCGTTGAACGCCTTTGTTTGCCTCCATTTATCCGAAAAGCTTCTATTGGCCATAGGGGCAAGCATACAAATGAATCGAGTAGCAAAAGAATCTACCGCTATCGTGCTTTTAAAACAGTCTACGACTTTGATATTTCGGAAAGACCGAATGGAAAACGCCGCTGCGAGACAATCGATTTTTTACTGAATCTATTGAAAAAGATTTGTCGTCGACCTCCAATAGCGCACAACCCCCTGGGGATCGACGACACATGGCCAATCGCCAAAAATCCCACAGCCATATGGAAAAGAAACGATTGATTGAATTTTAAGATAAGTTTATAATGACATTGTATCCATTTTTCAAACGTTGATTTTATCATCATTTTTTGGG # Right flank : CATAGTTGGTCGATTTACAATGAACCCATAAGCTGAAACACAAGGAGGCGATAAATAAGTTATACTGAGGACATGGAGAAGCGGAATCGATATACAGCAGGATGTAAGACGAAGGTCGTACTGGAAGTGCTGAGGGAAGAGCAGACGGCAAATTGAGCGCGATGGAATAATGATTTGTCCCTATCTTGAATTATGTCTTTGCTTAAATAACATGCTCGGACGGCGCGCATCTGCACCGCCCGCTTCACTGTTCATAAAAAAGAATCGCTTTCGTGAACTCGGTAAAGTCGGTTAGATGGTGATCAAGTATTTTTTGCAAAATTGTCAAATTAATCTCCTGGTAGTCGTGAACAGCGATGTTTCTAAATCCGACCATCGCTTTCATTTTTTGTGAAAGAAAAGGAGTGATGATGCCGTGCTGTTCTAAAAGAGAAAAAGCGTCTCGACTGTTTTGGGGGAGGCCTAGCTTTTTCTGTGCGACCATGTGCATCGCCAGGCCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 44419-44845 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPUG01000027.1 Anoxybacillus sp. P3H1B AT864_contig000027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 44419 30 100.0 36 .............................. TGATGAATGGATTCTAGATGAAACAGGGGGTAATTC 44485 30 100.0 37 .............................. TCCACTCGTACAAGAAGAGTCAATCATCGAACTAGAC 44552 30 100.0 36 .............................. CGAAGAATTGCTGAAACGCGAAGGAATTCGCGAAAT 44618 30 100.0 36 .............................. ACTTAAACGAGCCTATTAGTACAGTTAAGGATCATC 44684 30 100.0 37 .............................. GCTCGCAACCTTCTATTTTTTCTCCTCCTTTCCTTAC 44751 30 100.0 35 .............................. TTTTCTAATTCGAAGTCCGAAAGAGCCTTTCGAGC 44816 30 93.3 0 .................G....G....... | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 99.0 36 GTTTGTATCTTAACTATCAGGGATTGAAAC # Left flank : ATTGTCCGCTTTCTGTCAAACGACACACAACGAAAACAAATGGAGCTTGCGGGGCGCGCCTATGCACTCACCCAAAATTGGGAGGTTATTTTTGAAAACTTAATTTCTGAATATGAAAAAGTATGGCGCCACCATGCGGAGAGGCTACATGCATAGCGTGTGGGGAGACAAACAAAAGAATAAGTTTATATACTTTCGATTCATTACAAACTCAAGATGTATTGATATCACTAGCGATGTTTATTTTATGTGTTTTCCGCAACTGATCAAGATCAGGGTTAATTTGCCAGTTTGGCTTCATGCACCAGAAGGATGACAAGCTTCTGATGAAAGCTGTCGTCGACCTCCAATGCTGCTAAAATCCCTAGGAATCGACGACAGTTTATTTTTATAAAAAATCTTGGCACAATCAGCAATTGCCCCCATTTCTGATTTTCGCTATAATAAAACCAACCATTCCCCCAACGAGAGAAACACGGCAACATCAACATTTTTTTGGG # Right flank : CGACATCAAATTGGTCATCGACACGCTAAAAAAGCTATAAAAAAAACGGAATGTCAATGGACTCCTCCTCCATAGTGATCAAGGATTCCAATATACATCCGTTGATACAACAACGTGCTAAAAAAATACAATATAAAAGCCAGTATGTCCAGAAAAGGAAACGGTTTGGACAATGCCTGCATGGAACACTTCTTCCTCCATTTCAAGGCAGAGTGTTTCCGTCTGTACGCTTTCCGCACGGCCGAAGAAGTGAAGGATGCCGTACACCAATCTATTTGTTTTTATAACCATCAACGTTTCCAAAAGAAATTAACTAACCTGAGTCCTTATGAATATCGGACTCAGGCTGCTTAAATGTGCTTTTTTATTCCTGTTTACTTGACAGGGGTCTCTTCACCTTGGAGTGCTTTTTTATTTTAAGAAGGTGGCGGGGAAGGGAACGACATTTACGGAAGCGGTATCGAATTCCTCCTTCTTGCATCCATGGTTTGCTGGGGACG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTAACTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 3 54453-54944 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPUG01000027.1 Anoxybacillus sp. P3H1B AT864_contig000027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 54453 30 100.0 36 .............................. GTCCCTTTCGATGATAAAGAGAAGTTACTTCCTACA 54519 30 100.0 37 .............................. AAGAGTCGCCGGAAGTGAAATCCGATCCGGTGGCACA 54586 30 100.0 37 .............................. TCGTTTTTGATATAATAAAAGTAACAAAACGATAACA 54653 30 100.0 36 .............................. CATCGAAACGGTTCGTGCTCCGTATGGTGAGATTTA 54719 30 100.0 36 .............................. TTCGAACTCACAGGCGGGTGAGGGGGTTCTAGCCAC 54785 30 100.0 36 .............................. TTCTTTGGGACTTGAAATGTATAAGTTGGGATATAA 54851 30 100.0 34 .............................. AAGGGATTAGTTCATCAATCAGTCCATCGGCTAT 54915 30 86.7 0 ....T............A..A........T | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 98.3 36 GTTTGTATCTTAACTATGAGGAATTGAAAC # Left flank : TACTGGGAAACAAAAATTTACGGACCGTCGCGGAAGAGCTGAACAATTTATGAAAAAATATCATTTGCAGCAGCAAGATAAATAATGGAAGGATAAAGCCGTACGAGACCGACCGGGAGCCAATGGTTTTATTGATGAGGGAGAAAAAATTGTTTCTCATAAACTGTTGAGTAAAAAAAGAGGATTTCTATATAAACCCAGTCTGCCTTTCCAGATGCGCCCGTTTAAAATTTTACTGGGATGAATTGATAAGCCGGATTGATATAGCTTATTGGTCATGCGATCCCCTTCGGATCGCTACGGGGTCTGAACAAAGCACAGATAAAAAATAAAGTCGTCGACCTCCAATGGCGTAAAAATCCCTGGAGATCGACGACACATACATTTTGAATGAAACGGTTGTCCGATCAACCATTGCACAAACATGCACCTCTCGTTATAATAAAACTAACAAATCGTTCCAAAAACCAAAAAGCTTAATCTATCAACATTTGTTGGGG # Right flank : TATCGTGTGGGATGTTAAGGGATTAGCTGAAAAAGAACGCAGAGCCAGTGTATGGTTCTACGTTCTTTTTTATATAACTTAAACGATCGTTACTTTTTTGTTGAAAAAACAACCTATAAAAAATACAGATAGAATATAGATGTATTAAATAAATACAGGATATTTTTTGTTTTATTGTTGACAATATTCAGACAATTAATTATTATGTTTTATATACGATATTTACAAAAACATAATAAAAAGAGGTGCCTGAAAATGGATAGGCAAGAGGCGGTGTATTGCTCGTTTTGTCATTCGGTGGATGTGGCAAAAATGTCTATGTTTGGAACTGCGCAGCTTGTTTCGCAATATTACTGTCATCAATGCAAAAGTGTTTTCGAATGGGTGCGATGGCGGAGGACATTGGATGAAGTAGAGAAAAAGCGATGAAAATCTGAGGGTGCGCTTTGTCTTTTGAACCGCTTGTTAATGGAAAGATTGCTTGTGGAAGGGGGCGAAAG # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 192-1020 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPUG01000010.1 Anoxybacillus sp. P3H1B AT864_contig000010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 192 30 100.0 39 .............................. ACCGTAAAAATACCACTTAGATAACCATCAACAAGAACC 261 30 100.0 38 .............................. CCAGTTGACGGACACCTACAATGTGTCCGTGGTCATTG 329 30 100.0 37 .............................. AAGTTTTTTGTATCCGTTAAAAGTACAATTTCTTTAT 396 30 100.0 36 .............................. GTGTATACTTCGTAAACATGTTCAGTAGCTACTCCT 462 30 100.0 35 .............................. TTGGAAGCGAGGACCCCGCTTCAATTTCTACTGTC 527 30 100.0 36 .............................. TACTCCTCAGACTTAAAGAGATAATCAGCTGCCCGT 593 30 100.0 36 .............................. CCACATATGACAACCCACAAGAAACGAGCATGAATT 659 30 100.0 35 .............................. TCGATCACCTTTAAATACACATGCACACCCCCAAT 724 30 100.0 36 .............................. TCCTGCTTATACGTCCGGGTATTCTACTGTTGCGTA 790 30 100.0 39 .............................. CTACCTCCTTCATCAAGCATTTCAAAACTTCTTCCCAAG 859 30 100.0 35 .............................. CCCGACATTCTGGAAGTGATAATTCCCTCCTCTTC 924 30 100.0 37 .............................. ACGTATCAAAATGAATTAATTGTGATCTCCAAAAGAA 991 30 93.3 0 .................A.......A.... | ========== ====== ====== ====== ============================== ======================================= ================== 13 30 99.5 37 GTTTTTATCTTAACTATGAGGGATTGAAAC # Left flank : TGTCGGATACGCCCAATTCTCGGGCGACCTGCGCCACCGGCTTCCCCTGTTCCTGAATCATTTTTACGGTTTGGATTTTGAACTCTTTGTCATATTTCTGACTCATCTTCGGACACCTCGATTTTGCTAGGTTTATTGTCGCATTCTCGATTCTCGGTGTCCACTATTTAGTCTAGCATCAGAACTCATTGG # Right flank : CAACTTTGCATTTTTCATGATCTCCACCGCGTTTCTGAAACCATCTCACCGCACGCGAAAACATAGACAGATAAGGGACTTCGCCAAGCCCACAGGCCCGTTGAAAACAGTGAAAACGTTGCAGGATGCGTACGAATTTTCTCAAGGAATTAATAGCAAAATAGGTTTTCAAAAAGAAACATTTCAACAACGATTTTTTTCGACACTGGCGATCTTCCTGTCACATACGGTGTTTCTGGCAACGACAGAGAGTCAATATATCGAAATGAGGATTGATTTCATAAGACCATGCATGTTCGCTGTTCCAATTGGAAATCATGATCGTGTCCACCCCTTGGAGAGTTAGTTTTTGTCACTGTATATGATTTCCAAGGTGGTGGATTTTTTATGTGTATTTATGCATTTGTTATGCGCTTTGCAACACGTTCATTAGTTAAGAAAGATAATGTTAAATGAATGATTAAAAGAATATTGAGAATAGATAAAAAATGTATATTATG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //