Array 1 113935-111970 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXKT010000049.1 Salmonella enterica strain LSP 298/15 NODE_96_length_601552_cov_22.325649, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 113934 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 113873 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 113812 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 113751 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 113690 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 113629 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 113568 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 113506 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 113445 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 113384 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 113323 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 113262 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 113201 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 113140 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 113079 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 113018 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 112957 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 112896 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 112835 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 112774 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 112713 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 112651 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 112548 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 112487 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 112426 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 112365 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 112304 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 112243 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 112182 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 112121 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 112060 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 111999 29 96.6 0 A............................ | A [111972] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 131559-130066 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXKT010000049.1 Salmonella enterica strain LSP 298/15 NODE_96_length_601552_cov_22.325649, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 131558 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 131497 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 131436 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 131375 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 131314 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 131253 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 131192 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 131131 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 131070 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 131009 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 130948 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 130887 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 130826 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 130765 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 130704 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 130643 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 130581 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 130520 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 130459 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 130398 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 130337 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 130276 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 130215 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 130154 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 130093 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //