Array 1 6324-5430 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYIQ01000016.1 Listeria monocytogenes strain CFSAN049220 CFSAN049220_contig_0000016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6323 36 100.0 30 .................................... TAGATATACTTGTCCTTTTCCTTTTACTTG 6257 36 100.0 30 .................................... CATTCTTCCGCAGAGAGTTCAACGTAACTT 6191 36 100.0 30 .................................... GCAACAATGCAATGAAACATTAAGAAATGG 6125 36 100.0 30 .................................... TTATTCGCTAATGTTGCAAGATGTGCAGCA 6059 36 100.0 30 .................................... ATTCGTTATTTTATTCGTTAATAATGGTGA 5993 36 100.0 30 .................................... GTTATTGTCAAAACACTTCCCGAATGCGTT 5927 36 100.0 30 .................................... TTTTGTTCGCGTCGTTCTGTCAGCCCGAAT 5861 36 100.0 30 .................................... TACATCTCCTTTTCAAATAATATTGTTAGT 5795 36 100.0 30 .................................... CAGTACTTGAGTCAGCCACCTTCCATATAA 5729 36 100.0 30 .................................... TTGCTGTACCCATTTTGGAATGCTTTTACC 5663 36 100.0 30 .................................... GTGCTGCTGTTAGAGAGTCATGTTCACGCA 5597 36 100.0 30 .................................... ATCCCATTTTTCAACATAATAGGTAGCAAC 5531 36 100.0 30 .................................... ATGCAACAAAGGAGTCTTGTATAGTTTGTT 5465 36 97.2 0 .............................T...... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : CCCCTTCGAGCTATGCTCCTTTGAATTCGTCCCCACCGTCTGTTTTTTTTAATATATAGATTAAAC # Right flank : AGTGATGGGGAAGAGATTGAACTTATGTTTGTTTTAGAGCTATATTATTCTGAATATCAACACACAAAGATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATATGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAACAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1681-61 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYIQ01000010.1 Listeria monocytogenes strain CFSAN049220 CFSAN049220_contig_0000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1680 36 100.0 30 .................................... GAGCGCTGATTGATCCGCCAAGTTTAGGCC 1614 36 100.0 30 .................................... GTGTCCAAAATGTGAACTTTCTTACGTTTG 1548 36 100.0 30 .................................... GGAAGCCATGCTTACGATTACCAACGCCAT 1482 36 100.0 30 .................................... CGTGGGTCTTTCGTGTCTAAACCTTTGTTT 1416 36 100.0 30 .................................... TGTTTATTGGATTAATGTGCTATGTGGTCA 1350 36 100.0 30 .................................... GGCAGATGAACTGTATATTAAATTTGGGGA 1284 36 100.0 30 .................................... CCTTTCTTCTAATAATCGCTCTCTTGCTTC 1218 36 100.0 30 .................................... ATGGACAAGTTTATAAAAATCTAAATGTAA 1152 36 100.0 30 .................................... TGGAACAATGGTAATGGTACACAAGGTATT 1086 36 100.0 30 .................................... TTCCCTAGTGTAGCCCTTGTTGGAAAGTCA 1020 36 100.0 30 .................................... TTACTTACAGTCAAGACCTAGCATTTATGG 954 36 100.0 30 .................................... AGCAAATGAACTATATATCAGATTTGGAGA 888 36 100.0 30 .................................... TAAGCCTTCTTGGGCAGATAAAGATGTAGC 822 36 100.0 30 .................................... TCTTTTCATTATACTCTATTCCCCTTAATA 756 36 100.0 30 .................................... AATTGTAGAGGATACGGCATTTAATCCACT 690 36 100.0 30 .................................... AGATAAAAACAAGGACAAGTAAATTCAGAG 624 36 100.0 30 .................................... AGCAAAAAGCATTACATTTGATGAAATTCC 558 36 100.0 30 .................................... CTCCCGTCACCTTCTTCTAACTCCGCTATT 492 36 100.0 30 .................................... AGTATTGCCATTAATAGCATCAAGTAAAGA 426 36 100.0 30 .................................... AGCTTATAATTTCCATCAACAAAATATTAG 360 36 100.0 30 .................................... CTTAGTTTATCAGTTTATCACAATGGAAGA 294 36 100.0 30 .................................... CGGGTCTTTTTTGACCACTTCGGAGAACAT 228 36 100.0 30 .................................... TAGATATACTTGTCCTTTTCCTGTTACTTG 162 36 100.0 30 .................................... CATTCTTCCGCAGAGAGTTCAACGTAACTT 96 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : CTCAACAATGCAATGAAAAATTAAGAAATGAGTTTTAGAGCTATGTTATATTTAAATAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //