Array 1 3078486-3076948 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074096.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 2B_cip chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3078485 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3078424 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3078363 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3078302 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3078241 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3078179 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3078118 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3078057 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3077996 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3077935 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3077874 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3077813 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3077752 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3077691 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3077630 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3077569 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3077508 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3077446 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3077343 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3077282 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3077221 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3077160 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3077099 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3077038 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3076977 29 96.6 0 A............................ | A [3076950] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3096599-3094618 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074096.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 2B_cip chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3096598 29 96.6 32 ..A.......................... TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 3096537 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 3096476 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 3096415 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 3096354 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 3096293 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 3096232 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3096171 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 3096110 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 3096049 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 3095988 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3095927 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3095866 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3095805 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3095744 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3095683 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3095622 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3095561 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3095500 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3095439 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3095378 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3095317 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3095256 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3095195 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3095133 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3095072 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3095011 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3094950 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3094889 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3094828 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3094767 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3094706 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3094645 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //