Array 1 11-519 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWFV01000195.1 Acinetobacter bereziniae strain 374/14 Contig195, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11 28 85.7 32 .AGT.T...................... TGACTGACGTTACATTGGAAGGCAGTGCATTA C [15] 72 28 100.0 32 ............................ AATTGAAATCAGGGTTTCTGTGAGGAATTTAT 132 28 100.0 32 ............................ ATCATGGCGAAAAGGCGTGCCAGTCATACCAA 192 28 100.0 32 ............................ AATGCGAGCTTTTAAATTACCAGTTGATAATC 252 28 100.0 32 ............................ TGAATATGTTTATCTTAACTACCAAGTGATTG 312 28 100.0 32 ............................ ATGTTGAATTATCAGTAGACACCTTTAATGAA 372 28 100.0 32 ............................ CCTTACCAAAGCGATATAAGCCATCGCACCGA 432 28 100.0 32 ............................ ATTGTGGTAAAAATTAACTTAAATTTGATTTT 492 28 89.3 0 ..........AC.C.............. | ========== ====== ====== ====== ============================ ================================ ================== 9 28 97.2 32 GTTCACTACCGTATAGGTAGCTTAGAAA # Left flank : TTAAAAATGGG # Right flank : AATGTCAACACATGTATTACTGAAAGTCTAAGAGTTCACTACCGTATAAGTCATTTGTACGTGCTAAATAGAATGTTTATTTTTACTTGATTATTTAGATAATATTTATAAAAGTCGTTAATCGATTTTTATTCCGAAACCCCTTAGAAAACTGTTTTGTTTAACAGGATAATCAGCTTTTTTTATTTATCTCAATTTCAATAAATGGGCTAGGCAAGATCTTTTATATTCAAAGTTGATAATAGATGAGTAATTTTCTTATTGAACTTGAAAAAACTAAATGAATAAATCTCATCTTTTTATTGAATAGGCGTGTTTATAGGACTGAAAAATTACTTGATTATTAACTTAAAAATAAAATGGTTACGTAACTTTTTTATAATTTCGCAGCAATTAATAAACGCAGTACCTAAATAGCAAATTTTTGCTTCAATTGGCTGATTCATTTTGCTTGCTTATACAATTTTTGGATTTTTAAAAAATTGAATTGAGACGAAATT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3657-1766 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWFV01000209.1 Acinetobacter bereziniae strain 374/14 Contig209, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3656 28 100.0 32 ............................ ATACAGGGATGCCAGTATGGAAAGTGAAAAAT 3596 28 100.0 32 ............................ TAACCTTTATGTCAATCTACATTGCCTTTAAA 3536 28 100.0 32 ............................ TTACGATTTTCAGCCTAAACCAACGATTCAAA 3476 28 100.0 32 ............................ TTGAGCTGAACTCAATTGACCAGTGATTGCAG 3416 28 100.0 32 ............................ ATCAAGTAAAGTTTGTTTGATGATTTCATGAA 3356 28 100.0 32 ............................ TTGCTCTAATTCACGTTCAGAATAGTTTTGAA 3296 28 100.0 32 ............................ AATACAACTCCAGTTGTCATCGCAATACGTTT 3236 28 100.0 32 ............................ ATGAATCAAAAACAGCGGGAGAATGAGAATTA 3176 28 100.0 32 ............................ TGTAGGGTCAGTTTCAGGAATTGGAGGAGCAT 3116 28 100.0 32 ............................ ACTATGTTATTTTCTAATTACTCTACTGATAG 3056 28 100.0 32 ............................ TTTTTTATCGCTCTAGGCATGTATACAGCATC 2996 28 100.0 32 ............................ ATTCGCACATTGTGACTGCCCAAGAACAGAAC 2936 28 100.0 32 ............................ TTCGGAACGTTGTTTCTGATCTGTTGATAAAC 2876 28 100.0 33 ............................ AGTTTGTCCATCCCGGAACATTAATGGGTTTTG 2815 28 100.0 32 ............................ GCTTCAAGTGTTACAGCAGTACCGTTTCTAAT 2755 28 100.0 32 ............................ AGCAAGTACAGTAAGTAGCGCCTTGAAAGAGG 2695 28 100.0 32 ............................ TGTACTTCGTTGTACTCCAATCGAAAATAATA 2635 28 100.0 32 ............................ ATTGATGCGAAGGCGTGACAAAGATTAACTTT 2575 28 100.0 32 ............................ TTTTTTATCAAAATCGATCAGTTGAGTGATAT 2515 28 100.0 32 ............................ TGAACAATACACTCACCCCAACCGTGTGAGAT 2455 28 100.0 32 ............................ AATCTTAATAATTTTGGGGGCTGTATGGCTAA 2395 28 100.0 32 ............................ AACAGGAATTGGCTTTTTCCCTGTTGTCCAGT 2335 28 100.0 32 ............................ TGACCTGATTAATTTTACCAAAGGGCTTTTAC 2275 28 100.0 32 ............................ AACAGGCGAATCTAAACCGAAGCCGAACGTTG 2215 28 100.0 32 ............................ GATGGCGGTTTAGTCGCTGCACCTCAAGTCAA 2155 28 100.0 32 ............................ GCCGAGAACTGGCAAATCACAATACATGATTT 2095 28 100.0 32 ............................ TAAACGTGGTCAAAAGAAATGGCGTTCGGGAG 2035 28 100.0 32 ............................ TTATTCAAATCAATATGCTGATAATCGTTATC 1975 28 100.0 32 ............................ TTTCCCATTTAAGATTAAGGAAATCGTAAACG 1915 28 100.0 32 ............................ ATCGAGAACGTTATAAACCTCAGCATATGTGC 1855 28 100.0 32 ............................ TGGTAATGCAACAGCACAAGATGATTGGAGAA 1795 28 89.3 0 .........T.........A.......C | CA [1769] ========== ====== ====== ====== ============================ ================================= ================== 32 28 99.7 32 GTTCACTACCGTATAGGTAGCTTAGAAA # Left flank : AATAAGTTATAATTGTAAGTAAAAACTTGGGTCATTTGATGATTTTTAGGTTTAACTTACTGTTATTATTTTATTTTTTGTTTTAAAATTAT # Right flank : TTAAAATTAATTGGATATAGGTTTAATGTGACTGGAAAAGTCTAATCAATTGAAAAATTTCAATATTATGTTTAAAACAAAATTTGACAAAATGAGTGACATAATCTTTGACATTATTGCAATTAAAATTTGACTAAATTTATGATTTATAATAATAATGTTTTGACATTTTATTTGACAAAAAATTGACAAAATGCCTGATCAAAGTAAAGTTTGGCTAGATGACACAACTTTAAGAGTCATGACGTACAAGTCCGGCTCTTTTACCTTTCAGCTTGGGTTTGACTTAGAGCAGGTTACACCTATGCTTGATCGTGTAAACGATGCACAGAATAGATTTAATAAAATGCCAAGTTTGCCTCAAATTATAGATCAAGTACAAGAAAAGGTTTTAGCGAGTAGTATTTATAGTACAAATACCATTGAAGGTGGTCAATTTACAGAGCAAGAGACGAAGGAAATTTTAAGACTAGATCCTAAGACAATACAAAAGACCGAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-86.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1366-498 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWFV01000236.1 Acinetobacter bereziniae strain 374/14 Contig236, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1365 28 96.4 32 ...........C................ ATGATTCGGGAAAACACTTCGTCTATCGTTTA 1305 28 96.4 32 ...........C................ AAGCATTTTCTGTAGCCGGGTTAAGAAACTCA 1245 28 96.4 32 ...........C................ TTGAGGAAATGCTTTGAGCAATCGTGCAAGGT 1185 28 96.4 32 ...T........................ AATGACAATTCAAACTGAAGAAATCCTTGAAA 1125 28 100.0 32 ............................ TTATCAAAATTTCTTGAAACAGCTCTAAATCC 1065 28 100.0 32 ............................ TTTTAATGTTCTTGGTAATGAAACAGTTTTAG 1005 28 100.0 32 ............................ AAGATATAAATTACCCAACTTGATCGATCTCA 945 28 100.0 32 ............................ AAGCGAATGCAGCACAATTAGAGAACCGCGCA 885 28 100.0 32 ............................ ATACATTAAAATCGCGAAGTCTTGCGTACTCG 825 28 100.0 32 ............................ TCTAACATGATAGCCGTGTCTGCGCTACGCAT 765 28 100.0 32 ............................ TCAGCAGGCGGCGGATCGCTGCCGTCGTAGCC 705 28 100.0 32 ............................ AAGAAGGTGCTGTTGCAGGTAAGTGGTTGGGC 645 28 100.0 32 ............................ TCCAACCGCAACAAAATATTGAATGCTTTGTT 585 28 100.0 32 ............................ TTTCCCATTTAAGATTAAGGAAATCGTAAACG 525 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.0 32 GTTCACTACCGTATAGGTAGCTTAGAAA # Left flank : AATAAGTTATAATTGTAAGTAGAAACTTGGGTCATTTGATGATTTTAAGGTTTAACTTACTGTTATTATTTTTATGTTTTAAAGTTAT # Right flank : AAGAAGAATTATGGAACGCATGGCTTGAGAAAAGTTCACTACCGTAGGTAATCCCCCCTCAAAATAATTGAACTCAAAAGTAGAAAATCGAATAATCCTGTTCAAGGAGATTTTTTATGAAAACATCTAAATATTCAGATAGCTTAATCATGAGTATTTTAAAACAAGCTGAATCAGGAACACCTGTGCCTAACTTATGCCGTGAACATGGTATGAGTTCCGCTACATTTTATAAATGGAAAGCGAAATATGGAGGTATGGATATTTCAATGATGACACGACTTAAAGAATTAGAGGCTGAAAATGCTCGTCTGAAACGTATGTATGCTGACGAACGCCTTAAAGCAGATATTCTTCAGGATGCACTGTCAAAGAAGTTATAAAGCCTGTACAACGTAAATCTCTTGTTCAGCAAGCCGTTGTAACAATTTAAGATTTGCGTGATTAAAGATTGCTTCCTCTTTCAAATTAGTCAAACATGTTATCGTTATAAAGATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTATAGGTAGCTTAGAAA # Alternate repeat : GTTCACTACCGCATAGGTAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 87227-88874 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWFV01000064.1 Acinetobacter bereziniae strain 374/14 Contig64, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 87227 28 100.0 32 ............................ GTCACCAGTTGTCTTGTAATAAATGTTTCTAT 87287 28 100.0 32 ............................ TAAAGATCGTATCTCAACATATAAGATTAAGT 87347 28 100.0 32 ............................ TAACTCATTCATGGTTGCTAATGCATTCGTAG 87407 28 100.0 32 ............................ TTTGCCACCGGATTGCGATTGGCGAACAACTC 87467 28 100.0 32 ............................ TGCGACCAATGCTGGCTGTAAATCAGTCGTAA 87527 28 100.0 32 ............................ TGCGGGATTGTTCGGGTTGTACACAGTAGGTA 87587 28 100.0 32 ............................ AAAAGCCTACGGCAAATTTGAAGAAGTAAAAA 87647 28 100.0 32 ............................ AAAAAAACAGGTGTTAATTTCAAAGGTAAACT 87707 28 100.0 32 ............................ AATACACGATCATTCAGAGGCTATCCTCAATG 87767 28 100.0 32 ............................ TCTAAAACCTCATAATATAAAATTATTATCAC 87827 28 100.0 32 ............................ CATGATTTGAAATTGTCCCCAAGAACAAGACA 87887 28 100.0 32 ............................ AATAAGATTGGTAAGTATCCTTCAGGTGCGAC 87947 28 100.0 32 ............................ GCCATTATTAGGGTCATTTGGATTAGGTTTAG 88007 28 100.0 32 ............................ AGTAACCAAAATAGGATTAAATTTATGATTAT 88067 28 100.0 32 ............................ TGTCGGGTCTGTTTCAGGCGTTGGGAGTGCAT 88127 28 100.0 32 ............................ AAACAAAAGCGTTTTATATGTCAGAGCTTCAA 88187 28 100.0 32 ............................ GATCTATTTTTAAATAAGTAGTCTGAAGATTT 88247 28 100.0 32 ............................ TACGAAAGTACGTAACTTGTTCGCAATGTATT 88307 28 100.0 32 ............................ TCGGTGTACTTGCGTTAGTACGTGCTGCTTTT 88367 28 100.0 32 ............................ TAAGACCAGATGACTATTTTAAAAAAACAACT 88427 28 100.0 32 ............................ ATTCACCGCCATAAAGGATATGACTTTTTATT 88487 28 100.0 32 ............................ ACGTACAGGAAAATCACTAAAATCAGTTGAAT 88547 28 100.0 32 ............................ ATTTTGTTAGAAATGCTCTTAATGATTAGGAC 88607 28 100.0 32 ............................ TTTCCAATCCCTCTGAATACAAATTTCCAAAA 88667 28 100.0 32 ............................ ATTAAGCCATTTTTGACAGTCGGATTGCTTGA 88727 28 100.0 32 ............................ ATCTAACGAATTGTAATAACCATCAAATATAA 88787 28 100.0 32 ............................ TCATTGATGTTAAAGAGGGTTACAGTCCAACA 88847 28 89.3 0 ..C......A...........C...... | ========== ====== ====== ====== ============================ ================================ ================== 28 28 99.6 32 GTTCACTACCGCATAGGTAGCTTAGAAA # Left flank : TTCCAGAAACAGACTTGGAATCATACATAATTCAAAATTTTATTCTTATAAAAACAATAAGCACTATTTTTGATGAAATTTACGTTATAGCACAAGTTTTATTGAACTTTAACATCATATAAAAATAATCTTTTTTAGCAGTTTATTGAGTTGCAAAGGAAGTATGTATTATCGTTTGCAAGATAAATTAAATTTTAAATATTTGATTGATAAATAAATTATTTTATATGAGGTATGTCGTATGATTCTAAGGAGTGAATCTATTAGAGTTTGTATTATATACTGCTATAACTTGTTGCTGATGAGGCAAAAGGGAACAATTTTGGGAAATATGCTTTTAATAGAATTACGATTATTCAAATATTTTAACCCAATATTTTTTTACTCTTTAACAACTGAATAAAATCAATAAGTTATATTGGTAAGTAAAAACTTGGGTCATTTGATGATTTTTAGATTTAACTTACTGTTATCACTTTATTTTTTGATCTAAAATTATA # Right flank : AAATTGTTAAACCTCTCTGATGATTTTAAAAATTTATAGTTGTATAAATTGTTTATTTTATAGCAATAAAAAAAGCCCACTCGAATGAAGTGGGCTTTTAGAATTTGGCTCTCCAACCTGGGCTCGAACCAGGGACCTGCGGATTAACAGTCCGTCGCTCTACCGACTGAGCTATTGGAGAATCTGCATGCGATTATAAGGATATATCACGAGTGGTCAAGCCTTTGATGTCATCTTTTCTTCATTTTTGACTTGTATGCTTTTTATTTAAACAAATAAGATCAAAATTAAAAAAATGGATTTGAGTGGTTGCAAAGCGAGAGCTGACTTGTTAGATTAAAAACATAAAGAGCGTTTAAGTTTGACTTAAACCGTGTGGATTTAACCAACTTGCCAGCACTAAAATGGCTAAATAGGAGACAGCGCGATGACGACGCTAACTATTTCTCAAATTTTTGAAAAATTTTCTTTTTATCAAGAAAACTACCTTTCTATCCTGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGCATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTACCGCATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 23304-20218 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWFV01000031.1 Acinetobacter bereziniae strain 374/14 Contig31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================== ================== 23303 28 100.0 32 ............................ AGTTGAATAAAGCGATCTTCGATAAAGTGGGA 23243 28 100.0 32 ............................ AAGGTTTTGAACCCATAAATCGCTTTTGTATT 23183 28 100.0 32 ............................ TAAACGACAATTTTAAAAGGAGAAATGTCATG 23123 28 100.0 32 ............................ TGATGATTATTTCAAAAAAACAACTCGATACA 23063 28 100.0 33 ............................ TACTTCCGCGCGACTATCGTTTATTTTTTCTTT 23002 28 100.0 32 ............................ TGACGCTTGTGTCGAATCATTGTTAAGCCTGC 22942 28 100.0 32 ............................ TTTATGGCGGTGAATCGTTAATTCTTTGACAA 22882 28 100.0 32 ............................ TGACACAACAGCTATGATTTTTTGGCTCAAGA 22822 28 100.0 32 ............................ AGCTTAAATTGCCATTTGGTGTGTCGAATGCC 22762 28 100.0 32 ............................ ATAACGCCAAATTAGCAAGCCAACAAGCACTA 22702 28 100.0 32 ............................ ATAAGTTGTTTTAACTTCTGTCATGCCTTTTT 22642 28 100.0 32 ............................ ATTACAGGAGAATCTTCTCGAAGTTGGTTTTT 22582 28 100.0 32 ............................ GTCTTTCTCTGAACGGTAAACTGACGGTAAAA 22522 28 100.0 32 ............................ TACTGGAAAACCCTGATTAGAATAATTTGCTA 22462 28 100.0 32 ............................ ATTAACTGTTTTTGCTTGTAAATGCGGTTCTA 22402 28 100.0 32 ............................ ACTATAAGCTTCTCAACCGCTTGCCCTGCAAA 22342 28 100.0 32 ............................ TGTCGAGCATCAGCATTACCAAACCAGGTACG 22282 28 100.0 32 ............................ AATATCAATTACAACTGTGCCATCGGGTAATA 22222 28 100.0 32 ............................ TCAAGGAAATGCAGGGGATAGTTTAGAAAAAC 22162 28 100.0 32 ............................ ATATCTCCATTGATTGTTTCTTTAGTGGTCTT 22102 28 100.0 32 ............................ ATGCACTCCCATTTGCAAGATGCTGACTTGCC 22042 28 100.0 32 ............................ TTTGAAAAAACCACTCCAGTATATCTGCCTAC 21982 28 100.0 32 ............................ ATAAATTGCGTAAAAAGTAAGGATTTGATCGT 21922 28 100.0 32 ............................ ATCGCTAGGCGGAGATACGTTGTCAGGGTATG 21862 28 100.0 32 ............................ GTTAATTGCATAACTTGGCAAAGGTAGATTTA 21802 28 100.0 32 ............................ TCGTGGCGCTTCCTTAAAAGGTGGTGCTAAAC 21742 28 100.0 32 ............................ TGGCGTAATCCTGATTCAATCAACTGCGAATA 21682 28 100.0 32 ............................ TTGAAGAATCTTTGCAGGACTACATTTCAATT 21622 28 100.0 32 ............................ ATAAGGGCGTGTAATGTGATAATGACAACCTA 21562 28 100.0 32 ............................ TTACATTTTCAGAGTCTTTATCTGTTGTTTTG 21502 28 100.0 32 ............................ TCATGGGCGGCTGACGGGGATAAAGTAGCCTT 21442 28 100.0 32 ............................ ACCTCGATAAGTTGTACCGATTGGCATGGTTG 21382 28 89.3 32 .......A..G......T.......... AAGACGATTAGATAGCTCACTAATCAAGCTTC 21322 28 89.3 32 .......A..G......T.......... ACCACGAGCTAAAGTAAGAGTTCTCAAATTAC 21262 28 89.3 32 .......A..G......T.......... ATTACGGTGTTGATATTGTCGAATATACCGTC 21202 28 89.3 32 .......A..G......T.......... AGTTTGCAACCATCTCAGCATTTCTGCGATTC 21142 28 89.3 32 .......A..G......T.......... TTCTCAAATTCAATCCATTTGTTATTTAGGGC 21082 28 89.3 32 .......A..G......T.......... ATATCGGGAACGTACCTGAATTTGAGCTTGAA 21022 28 89.3 32 .......A..G......T.......... AACTCCCCAAACTTCGCTAACATCAATATTTT 20962 28 89.3 32 .......A..G......T.......... CTGAGTTATACCGTCACGGAGATGGCGCAGTC 20902 28 89.3 88 .......A..G......T.......... TTTTCTCTGTGCTTCCAATCATGTGGCAACATGTTCACTACCGCATAGCTTAGAAAACAAGATGGGCATATTTATGTGATTCGTAGTG 20786 28 89.3 32 .......A..G......T.......... ACAGAAAAATCCTTTAATAGCTTTATCAATTA 20726 28 89.3 32 .......A..G......T.......... AGTGAGTTCGCCTGCTGTTACTGAATGGGAAA 20666 28 89.3 32 .......A..G......T.......... AATTGAGTTGATTTATCTACAACCTTACTAAC 20606 28 89.3 33 .......A..G......T.......... CCAAACCAAAAATTATGAAAAATACTTTTAAAA 20545 28 89.3 32 .......A..G......T.......... AGTAAAACTATTGGTAATTGAACTGGACAGCG 20485 28 89.3 32 .......A..G......T.......... TAACTTGAAATCAGAATTGCTTGCAAAGTAGT 20425 28 89.3 32 .......A..G......T.......... ACATTCTGAGCCATCGTAGCCACATTAACGAT 20365 28 89.3 32 .......A..G......T.......... TGCAGAAGACTATATAGACAAAACTGTCGATA 20305 28 89.3 32 .......A..G......T.......... TTGCTAACGTTTTGAATTGCCGAAAAGTCTGA 20245 28 67.9 0 .......A..GT...AATCC....A... | ========== ====== ====== ====== ============================ ======================================================================================== ================== 51 28 95.6 33 GTTCACTGCCACATAGGCAGCTTAGAAA # Left flank : TTGAATATAAGAAAATGGTTAGATCGGTTTCCTGATTATGTGCATATCACAGGTGTACGTCCTGTTCCTGAAAAAGTAACGGCTTACGCAGTTTATAAACGTAAGCAAGTTAAAACCAACGCTGAACGTTTAGCTCGCCATCGAGTCAAAAGAGGAGATATTGGCTTTGATGAAGCATTGAGCCGTTATCTTCAAGTGGTGACAACAACTGATTTACCTTATGTCCAAATGCTAAGTTTAAGTACATCGGATGAACAAGATAAAAAGCGTTTTAAGCTATTTATAGAAAAGCAGATCACTGAAAAATCTGAAACTCAGGTTTTTAGTACATATGGGTTAAGTTCTGTGTCTACAGTACCCGAGTTTTAACCCAATATTTTTTCACTCTTTAACAGTCTAATTAAATCAATAAGTTATGGTGGTGGGTTGAAACTTTGGTCTTTTGTAGATTTTTAGTCTTAACTCACTGTTATAACTTTATTTTTTGTTTTAAAATTACT # Right flank : TATAAACGCCTTAACATCTTCGCTAAATTTAGGAAAGTACAAACGATATGGAATAATTTTTATAGTAAATAAAAGATGATAATTTAAATGATAATTATTTGCATTATTAATTGCATTTGAATATTTGGTAAAATACAATGTGCAACAATTCTTACACAATCCCTCCGTAATTTGAGTTGCGTATTAACATGAATAAACAATTAACACTTCAAGCACTATCTCTCTCCATACTCTCAGCAATGTCAATTTCAACATATGCAAACGAGACTTCAGAAGACTCTTCCAAGCTTAAAACGATCGTCGTTACAGCAAGTAGTCAGGCGGTCGATGTTAAAGAAGCACCAGCCAGTATTAGTGTGATTACCAGTGAAGATATAGAAAAACAACCGGTGGGTAGTCTTGGCGAGTTATTAAGTAAAGTACCTGGGGTTACTGGTGGAATTAGTCCTAGCAAAGAAGGCTCTAAAATTAAACTACGCGGTTTACCTGACAATTACACA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTACCGCATAGGTAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCACATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //