Array 1 254080-258008 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADFAW010000004.1 Streptococcus uberis strain GCPRG127 Contig_4_189.389, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 254080 36 100.0 31 .................................... ATTACTTTCAAGACAAAGCGATTTGATGCTG 254147 36 100.0 30 .................................... CTCAGAATTCAAACAGTAAAACAATTGATT 254213 36 100.0 30 .................................... TAAGGCTCTGAGAGTTCCTAGCTACAAGTT 254279 36 100.0 30 .................................... ATGTCGTCAAGTTTTCTATATTCAGTAGAT 254345 36 100.0 30 .................................... TTATTGGGAGATTTCAGTCCCAACTCCAAC 254411 36 100.0 30 .................................... ATGATAATCGAGTTAGGAGAGTTGATATAA 254477 36 100.0 30 .................................... ATAATGGTTTTTGCTAGTGACGATACGCAA 254543 36 100.0 30 .................................... GTCAATATTTTCAAATTCTCGTGCTATATT 254609 36 100.0 30 .................................... TTTACTGCAAACGGCTCTTATAACACGCAA 254675 36 100.0 30 .................................... TCAACAAATGCCATCTGTTAGAGATAGCAC 254741 36 100.0 29 .................................... GGCGATTTAGGAGCGCTTAAGGATTCAAC 254806 36 100.0 30 .................................... CGATTCTGTCTGCTAATGCATCAACGCCTT 254872 36 100.0 30 .................................... AGCAGACGCAGATTTTAAAGCTTACAATAC 254938 36 100.0 30 .................................... CATATAATTTCCTTGTCTACCCACTATATA 255004 36 100.0 30 .................................... ATAAACCCAAGCATTACCAGCCATTGTACT 255070 36 100.0 30 .................................... AAGGCTCTAATAAGTTATAAAGTGCATAAG 255136 36 100.0 30 .................................... TGAATATAATTTCTTTGTCACAGATGGCAA 255202 36 100.0 30 .................................... CAAGCGTTTGTTGGTTACTTTCGTTTAAAT 255268 36 100.0 30 .................................... CCGTCGTCACATCGAGCTTGCATCTGTTAT 255334 36 100.0 30 .................................... TAGATATGCCATTTATAGTGACGAAAACAA 255400 36 100.0 30 .................................... CGGTTTTGCTCGAATGAATGAAGGTGGCAG 255466 36 100.0 30 .................................... TGAACGATTGAAGTCTACCACGCCTAAAAC 255532 36 100.0 30 .................................... GATAATCTTGATAATCAATATCGCTCAGTC 255598 36 100.0 30 .................................... TGCAGATAATCAATATCATGATTTAGAAAA 255664 36 100.0 30 .................................... TCGATTTCATTGTTTGTTATATAGTCTTGT 255730 36 100.0 30 .................................... CCAATTTTCGACTGGAAAACCGAGGATGTT 255796 36 100.0 30 .................................... AGGTGGTTCTGGTTTAACATTAGACGACTT 255862 36 100.0 30 .................................... GAGGAGTATTTAGAATGGTGTCATGAGCAT 255928 36 100.0 30 .................................... TATCTGACACCGATAACCATCTATCGCTAT 255994 36 100.0 30 .................................... AAAAATGCTCGGTTTTAAATCAGATGGCAA 256060 36 100.0 30 .................................... AGACTACGCAAAATTACTTGCTGACAACCA 256126 36 100.0 30 .................................... GTTTTAGATTATTCAATTTCTCCCCAGACT 256192 36 100.0 30 .................................... GTTGCATTTGTCAAAATTTTTGTTACTCCT 256258 36 100.0 30 .................................... TAATGAGTTGTACGACTTGTACTACTTAGC 256324 36 100.0 30 .................................... ATCGGTTAGTGTCATGCTGACATCGTAGTT 256390 36 100.0 30 .................................... TGCTTTAGTTGTATCAATCAAGTTTGTTCC 256456 36 100.0 30 .................................... CAAGTCAAGTTGCAGTTGCAACATTTACGA 256522 36 100.0 30 .................................... AGTGTCGTCAAATGTGTTTACTGCAGGACA 256588 36 100.0 30 .................................... ATAATCCTCGGAAATTGTAGCCTCGTAATA 256654 36 100.0 30 .................................... TTTATTATGGTCCACGATATGGATACCTAT 256720 36 100.0 30 .................................... AGGCAAGGCAAGGTCACTTACTCAATGGCT 256786 36 100.0 30 .................................... TTATCAAAAACATTGAATGTCAGCGAACCT 256852 36 100.0 30 .................................... TCCATGTTCCACCAGCCGAACCGGTATCGT 256918 36 100.0 30 .................................... AATAACACATTCCCTGATGTTGAATTAGAA 256984 36 100.0 30 .................................... TTATATAAGATATATCTTGAAGATCTAGGA 257050 36 100.0 30 .................................... TATTGAGTTCTTCCTTAAGCATTGCTTTCT 257116 36 100.0 30 .................................... CGACATGTTCACAATTTCAGCTGAAGGGCG 257182 36 100.0 30 .................................... AAGAAGAAGCGTATACTGTTTACCTAACAG 257248 36 100.0 30 .................................... AGCCGTCACTAATAACCCATTAAATCTAAC 257314 36 100.0 30 .................................... GCTTCAACCCATTTTTTGATTTCAGTCGCA 257380 36 100.0 30 .................................... TCTATACGTAATTGCCTTACACACAATCTT 257446 36 100.0 30 .................................... AATTGCGGAACTTACTGGAAATGGGGGATA 257512 36 100.0 30 .................................... GAAAATTTAGATACTGTCAGATTCTGTGCT 257578 36 100.0 30 .................................... CCTTTGACAGAGAATGATATCAGACGGATT 257644 36 100.0 30 .................................... CACAGACTCGTAAGAGTCAACAACCCAAAC 257710 36 100.0 30 .................................... TTTAACTGTGAATTAGATAATTTACTCAAC 257776 36 100.0 30 .................................... ATTTAAAAGAGCTGTTAGAGATTGACCTTG 257842 36 100.0 30 .................................... ACTTTCAAACACTTCGCCACCTGCATATCC 257908 36 100.0 30 .................................... ATTAAGTCTTGAAGCCAACAAGGAAAAACG 257974 35 77.8 0 ............C...G....AT....-G....C.T | ========== ====== ====== ====== ==================================== =============================== ================== 60 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Left flank : AAAAGCCAGAAGTTAAATCTATGGTTGATAAACTTGCTGCAACAATTACAGAATTAATTTCTTTTGAATGTTTGGAAAATGAACTTGATTTAGAATATGATGAAATAACGGTGCTCGAATTAATAAAAGTATTGGGTGTCAAAGTTGAAACACAAAGTGATACAATTTTTGAAAAATGTCTTGAAATTTTACAGGTCTATAAATACTTAAACAAGAAAAAATTACTCGTTTTTATCAATACGGGTTCCTATTTGAGCGAAGAAGAAGTGGAACAATTGTTTGAGTACATATTTTTGTCGAATCAATCTGTTTTATTTTTAGAACCACGGAAATTATATGATTTTCCGCAATATATTTTAGATCAAGATTTCTATCTTATGCCACCAAAAGTGGTATAATAGTAGTAGAATATATCCCAATCAACGGAATCTTTCAAAATTGAAATCCTGCTAAGATGAGTAGCGCGATTACGAAACCTTTTGGAAAAATTCTTCCACGAG # Right flank : TTACATAAAACAGCCACTTTCTAGAGTGGCTGCTTTTTGCTTACTTTTCTCATTTTTGCATGATTTCTTTGATTTTGTGTGACTTTATCCAGTCTACTGCTTAAAATGTATAATTATTAATAAAATAGTCTTAAAAATGTATATCGAGAAATACGTTTTCAGGGTTTTTCTTGTTTTTTTGATGCTTTAAACCCTATTAAAATAGGCTTTTATAGTAATTAGATTTTTTAGTCAGTTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAGAAAAAATAAGAGGAGAGATTCCGATGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATCGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGTCGTGAGCATTTGGATGAGCATTATCATCAATTGAAAGATAAAGCTTTTTATCCTGGTTTGATTGATTATATGATGAGTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //