Array 1 1999-3613 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFUA01000194.1 Escherichia coli strain JML243 sequence194, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1999 29 100.0 32 ............................. CCTGCCCTGCCTGCCGGGGCGGGTTTATGGAA 2060 29 100.0 32 ............................. ATCACGTTAACAGCACCGGAGGCGAGGTCCGC 2121 29 100.0 32 ............................. CAGCGCGAACGGCTGCCCCTCGCCTTTAATCC 2182 29 100.0 32 ............................. AAACTAATAGAGCGTACTACCGGCCTGGTGGT 2243 29 96.6 32 ....A........................ AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 2304 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 2365 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 2426 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 2487 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 2548 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 2609 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 2670 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 2731 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 2792 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 2853 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 2914 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 2975 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 3036 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 3097 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 3158 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 3219 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 3280 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 3341 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 3402 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 3463 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 3524 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 3585 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGTGGGGCGCGTACGTGATATTGAAGCACTGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTATTATGTTCCCTGCATCAGCGGGGATAAACCGGACTTGTTATCATTTTTTAAGTTGTCGAACTTATGTTCCCCGCGTCAGCGGGGATAACCATTCAGGTATGTTCAGGCCGGGCAGTTTCCCGCCCGGCCTTCCTCACTTACGCATTCGACCAGCTCTGGATCGAATCCACATTCCCCAATTCCCCATGCATCACTTCATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8294-8995 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFUA01000216.1 Escherichia coli strain JML243 sequence216, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 8294 29 100.0 32 ............................. GTCCAGCAAACTGCGCTGGAACGCGTCAGCAG 8355 29 96.6 32 ............................T AATTAAGCGTTGTTTTTAATTAACTGAATTCA 8416 29 100.0 32 ............................. CAGCTCATTTTGGTATGACTGCGCTTCCTGAG 8477 29 100.0 32 ............................. GGGCAAGCGACAGTCTGAACGACGCGGCGGGG 8538 29 100.0 32 ............................. TTGTGAATTTTTGCACTACATCAGGTGTGGTC 8599 29 100.0 32 ............................. TCGCCCGAAAAACAGCTTGAATCTTATATCGC 8660 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 8721 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 8784 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 8845 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 8906 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 8967 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //