Array 1 18690-19389 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRDJ01000029.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000215 CFSAN000215_contig0028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18690 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 18751 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 18812 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 18873 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 18935 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 18996 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 19057 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 19118 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 19179 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 19240 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 19301 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 19362 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 12 29 97.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 163903-162347 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRDJ01000004.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000215 CFSAN000215_contig0003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 163902 29 100.0 32 ............................. ACAATGTGTGCTCGTCCCATACGCGTTTGCTG 163841 29 100.0 32 ............................. ACTATTCGGTCAAAACAGCCTCCATTCTCAGC 163780 29 100.0 32 ............................. CCAGCGCAAGCGGGAAACAATCATCGGGCAAG 163719 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 163658 29 100.0 32 ............................. GGTGACGGCTTTGTCCGACCGCATCCGGGCCA 163597 29 100.0 32 ............................. ACGAGGGACGGCTGGCGCTGGAGAGATTTTCA 163536 29 100.0 32 ............................. ACCCGCTCCGCGCAGCTCGCAGCGTAATTCGA 163475 29 100.0 32 ............................. ACACATATACTCTCCCCGTTTGCATCATCAGG 163414 29 100.0 32 ............................. ATCGCTAAATCTAAAATGCCCTCGTACAGTGA 163353 29 100.0 32 ............................. CGCAATAAACGGCATCAGCTATAGCTTGATAG 163292 29 100.0 32 ............................. AAACTGCGTTTGAGTTCCAGCCGCTTTTTCCT 163231 29 100.0 32 ............................. GCCGACGACAAAATCACGGTCACAACGGGTAT 163170 29 100.0 32 ............................. GATTCGACTTTATAGGGATTGATTAGAGGAGA 163109 29 100.0 32 ............................. TTATCTATGCCATAGTGACCCCACGTTACATA 163048 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 162987 29 100.0 32 ............................. ATTGTTTCCCGCTTGCGCTTGCATCGCCGGAT 162926 29 100.0 32 ............................. CTTACTATCAGCTCGCGTGCTGTTTGCAGGCC 162865 29 100.0 32 ............................. GATGCCAAACTGGTCAAGCTGGCGATTATCAA 162804 29 100.0 32 ............................. ACCATTACTGACGTGATGGCGGCGCAAGGGTT 162743 29 100.0 32 ............................. GGAAATAAACTCCTTGAGCAGCGGCAAGCAAC 162682 29 100.0 33 ............................. TGTGAACGTCGGATAAATACCGATTCCGCCTGC 162620 29 100.0 32 ............................. AGTTTCTTGTGACGCTTCTATTCAGGACAAAA 162559 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 162498 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 162437 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 162376 29 96.6 0 ............T................ | A [162349] ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //