Array 1 455322-456814 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBGP01000002.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain E72C1 NODE_2_length_635614_cov_17.416, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 455322 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 455383 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 455444 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 455505 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 455566 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 455627 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 455688 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 455749 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 455810 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 455871 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 455932 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 455993 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 456054 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 456115 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 456176 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 456237 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 456299 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 456360 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 456421 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 456482 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 456543 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 456604 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 456665 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 456726 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 456787 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 472946-474910 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBGP01000002.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain E72C1 NODE_2_length_635614_cov_17.416, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 472946 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 473007 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 473068 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 473129 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 473190 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 473251 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 473312 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 473374 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 473435 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 473496 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 473557 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 473618 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 473679 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 473740 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 473801 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 473862 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 473923 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 473984 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 474045 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 474106 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 474167 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 474229 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 474332 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 474393 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 474454 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 474515 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 474576 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 474637 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 474698 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 474759 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 474820 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 474881 29 96.6 0 A............................ | A [474907] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //