Array 1 110915-108565 **** Predicted by CRISPRDetect 2.4 *** >NZ_MION01000004.1 Corynebacterium diphtheriae strain ST395-KZN-2015-45784 45784_contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 110914 29 100.0 32 ............................. CGCACATGGGACAGCCGTACCTTGATTGTACC 110853 29 96.6 32 ............................G AATAGGATCGGATTTAGACGCTTCCGGCTCAA 110792 29 96.6 32 ............................G AATTTATCGGCTATGGTTTGCGCATTGTTCGT 110731 29 100.0 32 ............................. TGGAGCAAAAAGGCCCCTTGTCGCTAGAGGAC 110670 29 100.0 32 ............................. CAGTTCAACAAGATTGAGACGATGCGCTCCGA 110609 29 100.0 32 ............................. ACTCTTCTTACATTGTCGGGGCATCAGTGCTG 110548 29 100.0 32 ............................. CGACCTCCAGCGAAACTCTTGGGATGCCACAT 110487 29 100.0 32 ............................. GCTTTTAAGGGGAGCGTTGACCAGCTGTGTGA 110426 29 96.6 32 ............................G CAGGCTATCGCGGCGAACTCGACTGCGAATGC 110365 29 100.0 32 ............................. CAACTGACCGCCACCAAAAAATGCGACACTCC 110304 29 100.0 32 ............................. CCTGTGGGGTCGCCCGCTGAAACGTACCCGGG 110243 29 100.0 32 ............................. GGCATGGGAACTGCGATCTTCGGTGATGACCA 110182 29 100.0 32 ............................. CGCTGATACCACTCACGCTCCAAAGGCCCCAT 110121 29 100.0 32 ............................. GTCGGCGAGGGCACCAGATACCAATGTCAAGC 110060 29 100.0 32 ............................. CCGATCTTCGCGGCAGCCGCCCCACATATTTT 109999 29 96.6 32 ............................G TTGTCGAAGCGCGCCTCCGATGGTGTGCAGGC 109938 29 100.0 32 ............................. TCCGCCAGATAGTCAGTGTGGTTGGCGATGAC 109877 29 96.6 32 ............................T CATGGGTGTTTCAAGATCAACGGTTAACCGAA 109816 29 100.0 32 ............................. CTCACCCACCTGCACAAAGTCGCCTAGATTTA 109755 29 96.6 32 ............................T TGTTCAATTTCGCGGCGGTCAAACAGGTTTGC 109694 29 96.6 32 ............................G CTTGAAAAGATAAATCGAAAAATAATGGACCT 109633 29 96.6 32 ............................G GAGATCATTGATCTGTGCTTCCAGTGCGACGA 109572 29 100.0 32 ............................. CCCCTCATGTAGAAAAGGGATTCGTCGATTTT 109511 29 100.0 32 ............................. CTGCAAGAAAACAGAGAAGGCGTTCATCTCCA 109450 29 96.6 32 ............................G TCCACCTCTTGCACCAGCGCCTCCCTGACGAT 109389 29 96.6 32 ............................G GACACGGGCAACGGTGGTGGTTTCAAAAAGGG 109328 29 100.0 32 ............................. ATCCTCATGGATCAGGCTAGTCATTGGGTTCT 109267 29 100.0 32 ............................. CTGGACGCGCATGGCCCTGAACCTCGCCATCG 109206 29 96.6 32 ............................G TCCAGGGCTTGAGTGCGTGCGTCTTTCATCGC 109145 29 100.0 33 ............................. CCCCCTCATGTAGAAAAGGGATTCGTCGATTTT 109083 29 100.0 32 ............................. GCCGCAGTAATTACCGCACAAATCGCCGACAC 109022 29 100.0 32 ............................. TGTCCAAGATTAGGCTCCGCGGGGATCATGGA 108961 29 96.6 32 ............................G CACCAGTAGGAAGTATTGTGTGCAAGCGGACA 108900 29 96.6 33 ............................A CCGGGGGCGGATGATTATGAACATTTGGGACTG 108838 29 96.6 32 ............................G CAGCCTTAGACTGCAAAGCCTGCATAGAAGCT 108777 29 100.0 32 ............................. ATCATCACGATTATGCGGCTGAAGCAGCTAAC 108716 29 93.1 32 .......T....................G TTCGGGATAGTGACATCGCCGACAACATGCGC 108655 29 96.6 33 ............................A CCGGGGGCGGATGATTATGAACATTTGGGACTG 108593 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 39 29 98.5 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGCCTGCCAGCCCGAATGACACGCAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGCTTTTCGACGAAAGAGGAGAGGCTCGTGTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCGTAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT # Right flank : AGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGGATCTGTGTTTTCATTCAGAGAAATCAGTAAATGATGGGTCTACTAAAAAATTTTGAAAAAATTAACTTTTAATATCTATAAGGTGTATTCTGTGGAGAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGGTGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCAGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGGTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCAGCTTGCTCGAAAAGGGAAAGATCAGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 41902-43214 **** Predicted by CRISPRDetect 2.4 *** >NZ_MION01000034.1 Corynebacterium diphtheriae strain ST395-KZN-2015-45784 45784_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 41902 29 100.0 32 ............................. ATTTCCCATGCCGGTTCTTCGCCGGCGTCGTA 41963 29 100.0 32 ............................. TCCACCGAGTGCTTTTCATGCTGGTCAAACCA 42024 29 100.0 32 ............................. GTGTGGATGGTTCCGCACGTGTCAAGTCCGCG 42085 29 100.0 32 ............................. TGTCCCGTTGAAGTTGGTGAGTTGCCTGCGGA 42146 29 100.0 32 ............................. TGGCGCAATCTAGGAACCGCAATCGAACGGGC 42207 29 100.0 33 ............................. TTTGTAAGGACGCGTACTCGCTTTCCACGAAAG 42269 29 100.0 33 ............................. TGCACCAGGCTCTCATATCGGAGGCAGAAGCAA 42331 29 100.0 32 ............................. ACCCGTAGGGGGTTTCGGGGGATTTTTTTTAG 42392 29 100.0 32 ............................. TGAAGCAGTCGCAGAATGGGGGGAAGAGCTAC 42453 29 100.0 32 ............................. GCCACACCATGCTGTTCCTTGAGCACTTAGCA 42514 29 100.0 33 ............................. TAGGTTGTCGGTGTCGCGGCGTCGGTTATCGCG 42576 29 100.0 32 ............................. CCCTGCCAGAGATCCAACCATATTCTCCGCTA 42637 29 100.0 32 ............................. TTCCAGTTGGCGTTCCGTAGGGTTGGCGCATG 42698 29 100.0 32 ............................. AAAGGGCGCTATCACACCTTCTATGGTGACGC 42759 29 100.0 32 ............................. ATGTCTTCACACGCTATTCGCAGTGGGTGGGG 42820 29 96.6 32 ............................G CACGTAGGCTTGTCGGGCCGCATATGAATGGT 42881 29 100.0 32 ............................. GTCTTCGAGGATTCGACGGGTTTCCATTGTGC 42942 29 100.0 32 ............................. TTAAAGCACCATCCACGGGTGTTATTTGCTGA 43003 29 100.0 32 ............................. AGCTCAGATTGCGGGGATTCTCCCCACATTTT 43064 29 96.6 32 ............................T AAAGCGAGGTCGCTGCGCGTGACGCTGCCGAA 43125 29 100.0 32 ............................. GCGAGCGACCGGCATGCCATCAGACCCGACCC 43186 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.7 32 GTCTTCTCCGCACACGCGGAGGTATTTCC # Left flank : GTCGGCATCTCCGCCGTGAGATCCATTCAAGAAAAATAATGGCAGGTATGCTCGAAGCACTAATGGAGGTGCTGACACCGTATCTTCCAAATCGTAATGACGATCGGCTAATCGGCGACAGTGACGAAGTCAAAGGGCACATACAGTATGGCAAGGAGATTAACTAGATGTTCGCTGTACTTTACCTTCAGGCAGCACCTGATCATCTCCTTGGTTACGTCACCCGTTTCCTTACTGAAGCGGATACAAGCATCTATGTTGGAAATGTTTCCAAAAACGTAGCTTCAAACTTATGGATTCGTGTAACAGAAGCTATTAAAGATGCTCATGCCACAATGATTGTGAGCGATAATTCTCGTGAGCAAGGTTTCTCAATAATGACGACAGGTGATAGCACACTACAAGTTCTTGATGCAGATGGGTTATCCGTCCTGGCTTCACGCCCTGGACGAGCCGCTGTAAAATTACATGGCCTACAGTAAAACTGCAGTACAGTTAGT # Right flank : CGGCAGGCAATCCAAATATTCGTGTGATGCGTGTGTCTGATGGCTCGCTCATGGACTCCGAGTCTCAGAAGATTCTCTCCGATATTGCGACAGAAACAGGATTCCAGGTGTGGGTTGAGCTGGTTGATGAAACCGGTGAACATGGCATTGTGATTGAAGATGGGCAAGTGCGGGAACTTATAGAAGAAGCAGTGTAAGTGCTGCGTGGTGGGGCGCGCATACCTTCAACGCGCACTAGATCAAAGGACAAAGAAAATGGCACAAGGCGAAGTCAACGTCACCATTGTTGGTAATCTCGTTGCAGACCCAGAACTTCGCTTCACCCCTAATGGTGTAGCAGTAACCAGCTTCCGTGTTGCTTCTACCTCCAAGAAGTACGACTCCCGGTCGAACCAGTGGGTAGATGGTGACGCGGTTTTCTTGCAGTGCAACATTTGGCACCAAGCTGCCGAAAACGTTGCAGAATCCCTCACCAAGGGCATGCGCGTGATCGTCACCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCGCACACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //