Array 1 95684-95838 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070262.1 Streptomyces californicus strain FDAARGOS_1210 plasmid unnamed2 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 95684 33 87.9 28 .............................CGAA GCGCACGGGCATAGCTCGCTCTCGGGGA 95745 33 84.8 28 ..............G..............TTTC CGGCTGGGCTCGCCCCGGGCCGCAAGGC 95806 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ============================ ================== 3 33 90.9 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGGACG # Left flank : ACCAAAGCCGACGAACCTGCCAAGCCGCCCCTGCGCCAGCGCATCGCCACCCGCTGGGACAACCTCAACCCCACCACGAAGGCCATCATGGTCACCGGCCTTACCGTCGTGGCCGCAGGAGTCGTCCGTGCCGTCGCAGGTGGGCGTGCACCCGCAGACGAGCCCGCCCACCCGATCGAGACCGAAGAGAACACCAGGCAAGGGCGCTACGACCACCTTGGCCGCCACGTCCAGTTGAACAACCACGGCTACTACTACATGTGCCAGCACTACGCATGCTCCAAGAAGGTCAACTGGACCATCCCGGGTCACGACTGTTGCGGGCGGTGCACCCCCGGCCGGAACTGCCTCAAGGAAGCGCAACGCGACTACGCCGGCCCTGGCACTCATGCGCACGAGTTCTGGGAAACGTTCATGAACCCCGGTGTTTGCGCCACGTGCGGCGAACTGCCCGAGGTGCACCCGAAGCCCTAGCAGTCCAGCCTGCTCGCCCCCTGCCC # Right flank : GCACCGATGAACCCGGAGCAGCGCTCCAAGTCCGGGCGCGACCGCCGAGGTGATGCTGGTCAGCCTGTCCCGTTCGCCTGAGAGGCGTTGCAAGGCTACTCCGGGAGTGCCATGTCGAGGCCAGGTCGGTTGCTGGGCGGCCATCTTGGCGCATAGCTCCTTGAGGGCTTGGCGGCCGTCGGCGAAGCGCTCCTCAGGTTCCCCAATCGTTCGCGGAGCTACCGTTCGGCGGCGGCCTGGATCATCGGGTTGGTGTGCTGCTGCCTGGTCCAGGTGGCGCGGTGGGCGGCGATGACTTCGCGGTAGCCCTCCGGCGGATCCGCACGCCGCATCGGCGCTGCGGGTGCGGTCAAAGTGGGGACGGTTCGGCGGCCGCCGTGGCGGGGGCGGCGACCTTTACAGGTGCGGGCGCCAGGACGTTCGCGGCGGGCACCTTCTCTTTGGCCGCCGCAATCAGCTTCGGCGCGCTCCAGCGCAGCTGCGTTGCGGCTCCCGGAAGG # Questionable array : NO Score: 3.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGGACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 673390-673544 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070260.1 Streptomyces californicus strain FDAARGOS_1210 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 673390 33 100.0 28 ................................. GGACGGCGCGGCCTCGGATCCCTCCGTT 673451 33 100.0 28 ................................. CCCGGGCGCACTCCTCGAGCGCGCTGAA 673512 33 90.9 0 .............................C.TC | ========== ====== ====== ====== ================================= ============================ ================== 3 33 97.0 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT # Left flank : TCGCTGCCGCTGGAGGACCGGGTGCTGCTGGTGGCCGCGTACTGACCCACCAACCTCACCCTGCGTCAACTCGCCGCGCTCTTCGGCGTCTCGAAGTCGGCGGCCGACCGGATCGTCGCCCACCTCGGGCCGGCTCTCGCCCTCCAGCCCCGGCGGCGGTTCCGCAAGGAGGCCGTGCTCATCGTGGACGGCACCGCGGGTAGGGAGGCAACGCCGGATCCAGCCCCCGGGCCACCACTCGAACCTGATACTGCAACGGAAGCGAAACCGCCACCCATCACACACAAGCACCCAGCACTGACATTGAATATCGCTACTGGCGTACCGACGGTCGTTTCTCGATCAGTAACGGTGGATCAGTAACGGTGCGCGGTGCTCGCCTTGGCGACCTGGCAAGCTGCAGCTGGACAGAGTGACGGCATGCGTCTGACTGAGCGCCTCACCCCCTCAAGAATGGCAAAGAAAATGCAAAGCCCTTCTTAAGGCGCAGTTCAGGAAGT # Right flank : CTCAGACTGTGTTGTTCGGCCTTGACGGCGCCCTCCACAGCGCAGGGTCACACGCCCAGGCACCTCACCGTACGGACCCTAACCGAGGTCTGGCATTGAACCTTTGCCAAGCTGGCGGTGTTGACCGCGAGCTGGACACGCCTGCGCAATGGCGAAGCTCCTGACAGACGGATCTCGACCAAGATCACCTGTGCCCGCCCGGAGCTTCGCGTGCTCGTACACCCATCCTCGGTCGATGTGCCCCATCGCGGTGGTACGCCGCCGTCCCAGCCTTCCCCGCTGAGAAGTTCCAGCACCCCTTTCCCCGATCTCACCCTCAAGGCGCCCCCACCCGTTCGACCACTACCTCCACGCTCGTATCCGTGCTGGCATGACATGAAGGGCCGCCTTCGTCCTCCAACCTCACCCCGAGCCTCGCACCGCGGCAAGACCCTGATCCAGCTGCACCCGAGCGAGCCGACCAAGAACGAAGAAGAAGCCCACCGGCGAACCGGTGAGGC # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3321520-3321853 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070260.1 Streptomyces californicus strain FDAARGOS_1210 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3321520 29 100.0 32 ............................. GTCCTCCACGACCTCTTCCCAGGTAGTGCCGA 3321581 29 100.0 32 ............................. CCGCCGCTCGTACGGGCCATCGCTGCCGCGTT 3321642 29 100.0 32 ............................. TTCGTCTCGAACTGCTGGCCCAGGTCCGAGGT 3321703 29 96.6 32 .C........................... CTCGCGAAGACCCTCGCCCAGTCCTGGGGCAA 3321764 29 96.6 32 ...........A................. GCTGCGTGGCTCGCCTACCGTCTGGGCTCCGA 3321825 29 86.2 0 .............A..T........G..T | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GCGAGCGCGGGCATGCGTGATGGCTCCTGTGGCGGACACGGGGACGGCCGACGACCGGGGAGGGGAGAGCCCTGCGCGAGCGAGCGCCGGGCGGTGGCCGCGCGATGACCGCGGGCCCCCGGCTGCCGGGTGGCCAAAGTTGACGCGTCGAAGTCTCGCCGCGCTCCACCCACGGGGTCGTCCCCCCAGCAGCCGAACCACGCCCTGCCCGAAAGTGCCACACCCCGCCGACCGACACCCCTCGGAAGTGCTACCGCCGGGCATCCTTCTTCCGACCGACCCTGGCGACCCGGGGGCGACGGGCTGCCGCCAACAGTCCGGTGTGCGACCGAAGTACGGGACAGGGCGCTGGGTGAACTGGCAGGCTGGGAAGCAGATCCCGGGGGTGCTGAACTCCGCCCACCTGGCGACCCATTCGAAACTTGAGGCCACATATGCCCGACTCTCAAGAAGTTCCCCAAAACGACCCCTCGGCCGGATAAACCCGCAGACCACGAAGG # Right flank : TACCCATCCCGATGCGATGCCGTGGTGAGTCAAATGGCCTCGGGCGCGGGTGATCCGTCCTTCAGTCAGGCCCGCCCTACACCCACGCCCCCCATGTGCAGATCTATGCACACAAGCACTCTTACGGGAACAAGCGCTGGAACGCCCTCTTGAACAGCGCTACTTCGTGCCAGATCACGATGCAGACAACTACAAACCCCCGCAGCCGGAGGAAGCCCATGTCGTTACAGTTCATTGGGATCGACCCGCAGACGGGCGATGACGAGAGCCCGACCGCGTGGATCGACCGGGAGAACGGGGAGCTCGTTTTCCAGGGGTGGAAGCCCGGCCCCGAACTCGAAGCCGAATGTGCCGCCCTCGAACTGTCTGGGCACGCCGTAGGAATCCCCGAGACCGAAGCCGAGGTCCGCATCCCCGCCAGGATGGTGGACATGATCAGGGAGGCATGCGATGCCCTCGAACGCGCCGACGGCGTTCGCTGACCTGCTGGCCAAGTGCGA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3323092-3324280 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070260.1 Streptomyces californicus strain FDAARGOS_1210 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3323092 29 100.0 32 ............................. GCGCCGGCGGTTTCGGTGGACCTCTCTGCCCT 3323153 29 100.0 32 ............................. GACGCCAAACGCAGCGCCTCATGGACGGCGTT 3323214 29 100.0 32 ............................. AGCCAGCCGACCACGGTCACCGGGATCGAGTG 3323275 29 100.0 32 ............................. TCGTGAGACCGCCCCACGCGCGCGCGGAGGGT 3323336 29 96.6 32 ............................T CAGTCAAAAACCTTCGCGAAAAGGACATTCAG 3323397 29 100.0 32 ............................. CACACCGCCAAGGCCCGGGAGGCCCGCAACCA 3323458 29 100.0 32 ............................. ATGTTCGGTTCCGGATGGGACACCCTCAAGGG 3323519 29 100.0 32 ............................. TCCCGGCGCAGGGCTTCGACGACCAGGGCAGT 3323580 29 100.0 33 ............................. GAGCTCGCGCGTATCCAGCATCAGCGCGCAAGC 3323642 29 96.6 32 ............................G GGAGATTGGGCCCCGCCATGTCAGTCCCAGTT 3323703 29 100.0 32 ............................. ACGTCTCGGGTCATGAAGTCGTACTGGCCCTT 3323764 29 100.0 32 ............................. AGGCCCCGGTGCGCCGCGCGTTGCCGGGCCTT 3323825 29 96.6 32 ...C......................... GACTACTGGTGCAAGGGCCTGTCCTTCGGCCC 3323886 29 96.6 32 ...C......................... CGCACCCTGCGGCAGGGCCAGCGAACCGACCT 3323947 29 96.6 32 ...T......................... GGGGCGGAGCCGTAGCCGTAGCCGGACGCGGC 3324008 29 93.1 32 ...C..........G.............. GTGGCGGCCTCGCGCTCGTCGGCGGTGGCGCG 3324069 29 89.7 32 ...C.............T...C....... CGCACTTCGAGCGCTGGAGATCCCAAGTCGTA 3324130 29 89.7 32 ...C........T............C... GCCGCCTGCGCACTGGCCGAGGGCACGACGGT 3324191 29 93.1 32 ...C.................A....... ATTACGTCCGGTGGACTCGGAAACCGGCCCCG 3324252 29 93.1 0 ...C................A........ | ========== ====== ====== ====== ============================= ================================= ================== 20 29 97.1 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : ACATCGCCGCCGGTGAACAGGTACGGTGGCTGCCCCGCCGTCAGGCATCCGACATCCCTCTGCCCGGTAACGACTTCTGGCTGTTCGATGACCGTCTCGTCCGGTGGAACCACTTCGGCGGCGACGGCTCCTCGCAAGGGCCGGAGCACACTACCGACTCGACGGCCGTGAAGCTGTGCGGGAAAGCATTCGAAGCCGTGTGGGATCGCGGCATACCGCACGACCAGTACGACATCCGCTGACAACCGCCCCCGGACGCCCCCCCTTCTCAGCGCCAACGAGAGCGCCGCCGACGCCTGGAAGGCTCCGACCTAGGATCCGGTCGCGGCTGCACCTCTTCACAGAAGCCGCAAGAAGCCCTCCCCCGCAATGAGGGACGTGCAGAATAGCTTCTGTCGAGCATCAAGCAGGCCGATTCACCCCGAAGGTCCCGCATGACCGTTTCTCAAGAAGTTAGCAAAAACGGGCCTACGGCCACCTAAACCCGCAGGTCACGAACA # Right flank : CCACGGGCTCACCCCGCCCGGCATCCTCGCGGCGGTGCTACCTGCGCGCGGGGGCGACCCCTCCACACCCCCGCCCGACTCCACCCAGCCGGGCGCCCCTCCCCCCCATCGCGATACGTACACCCACGCCCCCCGTCCACCCGGCAACACCGCAGGTCGCGTGCCCTATGGTCTCCGTTCATGAGCCGAACCACGCCGCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCGCGGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCATGCTGTGGCCGGCCGACGAACCCTGGCCGGTCTGCACCGAACCGCACAAGCGCAGCAGCGGGTACCGCATCGCGGACGTACGACGCGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGAGGAACGGGACCTGCTCAAAGAACTGGGCCGCAGGCACCGTCAGCGC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3328752-3329881 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070260.1 Streptomyces californicus strain FDAARGOS_1210 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 3328752 30 96.7 31 .G............................ GGTCCGCCAGGAACCCGTCCGTGGACACGTA 3328813 30 96.7 31 .............................C GAGGAGATCCCGATGGGAAAGACCGTCTGCT 3328874 30 96.7 31 .............................G CTCGCAGGTCGTCATCCTGGTACCAGTCGCC 3328935 30 100.0 31 .............................. TGAGCCGGAAGTCCGACTCGGAGTAGGCGAG 3328996 30 96.7 31 .............................C GAGCCAAGGTAGTGCAGAGCTTTTACTCGGA 3329057 30 100.0 31 .............................. CGCACGGCGGCTACTACTTCGGCCGCCCCAA 3329118 30 93.3 31 ............................AC GGCGGGACCGATCGTTCCCCCCAGCGCGTCG 3329179 30 100.0 31 .............................. GCCTGTCCAGGCGGTCCGCCAAAGCCACGGA 3329240 30 100.0 31 .............................. TGTCTACACCGGAGAGGTGTGTCTGTTTTAC 3329301 30 96.7 31 .............................G CCGCATCCAGGCACCCCCGGGCACCGTCTTC 3329362 30 96.7 31 .............................C CAGCGGACGTGATCCGCGACGGAGTTGGTGG 3329423 30 96.7 31 .............................T GCACGGCGCAACAACACTCGCCGAACACCTG 3329484 30 96.7 31 .............................G GTGACCGGATGACCGACGACATGATTGACCG 3329545 30 93.3 31 ............................AC CGGGGCAAAGCGAAAGGCAGGCGATCCGGTG 3329606 30 93.3 31 ...........C.................C GCACCCCCAGCATCGTCTCCATGTGCGCGTC 3329667 30 100.0 31 .............................. TCAGCGGCAGGGACTCGGGCAGGGTGTACGT 3329728 30 93.3 32 ............................GT GTGGGCGCAGCCCCACTATCTGTGCGTAATGA 3329790 30 93.3 31 .........................C...G GCGGCAGTGATCGGCGTACCTGTACGCCGCT 3329851 30 73.3 0 ...........CGGT......C....TT.G | T [3329861] ========== ====== ====== ====== ============================== ================================ ================== 19 30 95.4 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : CCGACAAAATCCCACCCCACATCCCCGGAGAGGCCGAAACCCGATCACCGAGCACCGCCAAACCGACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCGCCGGAAGCCCTCCCTGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCCACGGCGGCGAGCCCACCACCCCCACCCCGGACGAGGTCGCCGCCGTCAAAGCCCACGTCGCCAACCTCCGCAACCTCCTCAAACCCGCCTAACCCCCAGGCGATGGGTCGTTGTTGGGCAGGACGGCCACACCGCACCCCGGGGCCGACTCCACGGAAGGCAGAACCACGCCCCTTCCACCGAAGCCGGGACAATGAGACCTGTGGTACGCAGAATGGCACCAGCCGAACCACACACGTGACCACTTTGCGCCAGAAGGTGAGATATGCCGGTTTCCCAACAACACAGTAAAAACCGCCTCCCCGTCACCTAAACCCCCAGGTCACGAAGGG # Right flank : GCGGGTGTTCGCGGTGCCGCTTCGGTCGCCCCGTGTCCCGTAGACGCCCAGGGGCACTCGGCGCGGCACCGGGCCGCCCCGCCCAGTGCCCTACGGAGAGGCTCCCCGACCGCTCAGCCCAGCCCCTCCTCCACCAGGGTCGCCCACTGCGCCACCACCCGGGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTCCGCGCCCAGGAGTTCGACCGCGATGCGGTGGGTCTCGCGGCCCACCCGCGCCTCCAGTTCCGTGACGCGCGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGCGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAGGGCCGCGACCACCTCCGCTCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCCGCGACGTACTCCACCGC # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 4529365-4528959 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070260.1 Streptomyces californicus strain FDAARGOS_1210 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 4529364 30 100.0 31 .............................. CAACTCTCTCCTCCTCCGCCCACTGCCCCGC 4529303 30 96.7 31 .............................G CATGATGATCGGCTCGTGGGCCTCCGCGACG 4529242 30 96.7 31 .............................A CTCTGAACCCGCGCTGCTCCGCGAACTCCCG 4529181 30 100.0 41 .............................. GCAGGACGCGATCTGGCAGAAGGCCCTCGACGGCGACCTCG 4529110 30 93.3 31 .........A...................C TGCGGGTGTTCCTCGACAGCCGGGACGCGGG 4529049 30 93.3 31 ...C.........................G GGGTTGAGGTCGAGGGCCTGGAGGAACTGGA 4528988 30 96.7 0 ............................G. | ========== ====== ====== ====== ============================== ========================================= ================== 7 30 96.7 33 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : CAGGGTGACAGAAGACCGATCGCCGGACACCAAGGAACCCACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCACCACAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACTCACGGCGGCGACCCCACCACCCCCACCCCGGACGAGATCGCCGCCGTCAAAGCCCACATCACCAACCTCCGCAACCTCCTCAAACCCGTATAACCCCCGCCCCAAGAACCCCCGTTAGGCAGAACAGACACACCGCATCCCCAGGACCAGCCCCACAGACAGAGAGCAGAACCGCAGCCCTCCCGCCGAAGCCAGGCCCAGATGAGACCGGCGGCGGGCAGAATGAGCATCAGCCGAACCACACGTGACCACTTTGCAACGGAAGGCGAGATATGCTGGTTTCCCAAGAAGTGAGTAAAAACCGCCTTCCCGCCACCTAAACCCCCAGGGCACGAAGGTGGTCCCCGCTCACGCAGGG # Right flank : CGAGCCACCCGACGCACCTGCCTCCGGCCCGGGAGCGTCCAGGTGCGGCCTCGCCCGAGGCCGCCACCCCCGACCCCGGAGCACCGCCCCTACGCTTCCGACGTCCCCGACACCGCCACCCGGAACCCCACCCCGATCGCCGCCAGGTCCTCCTCGTACGCGCCGTGGCGGCGGGCGCAGCGGGCCAGGTCGCGGTCGTGGCGGAAGGCGCCGCCGCGGGTGATGTGGGGGTCGAAGGCCCAGTCCTCGGTCTCCGGGACCTCGGCGGGCGCGCCCGGATACGGAGCGTAGAGCGTGGACGTCCACTCGTCGGCGTTGCCCGCCATGTCCAGGACGCCGAACGGGCTCGCGCCCTCCGGGAACGAGCCGACCGGCGTCGTCGTGCCGACGCCCAGGTCCACCAGGTTGGCCAGGCCCGTGCGGTACTCCTCGCCCCACGGGAACTCCCTGCCGTCGTCGCCGCGTGCGGCACGTTCCCATTCGTCCTCGGTGGGCAGGCG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.10,-13.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 4554860-4554523 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070260.1 Streptomyces californicus strain FDAARGOS_1210 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 4554859 30 93.3 30 ............................TC GACTTCGATACTCCACGTCTGAGGCATTAT G [4554836] 4554798 30 93.3 31 ......................G......A GCACGTGCGGCTCACGTGGGTGACGTTGCAG G [4554773] 4554736 30 90.0 31 ........A................C...C AGATCTCCCTGGGCCGGGCCACCGTCGCGTT 4554675 30 93.3 32 ........T....................A TGACCGCGCCGTACTTCAAGGTGGTGCGCGGC 4554613 30 100.0 31 .............................. GCTGGTTGCGGGTGAGTGTGGGGACGTCGGT 4554552 30 93.3 0 ...G......................T... | ========== ====== ====== ====== ============================== ================================ ================== 6 30 93.9 31 GTGTTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : ACTGACAAGATCCCGCCCTGCCTCCCCACAACGGCAGAAGTCGACTCGCCGGGCGCCACGGAACCCGCCCACGAAACCCTCGTCGAGTGCACCAACTGCCGCCGCCCAGGCCCACCGGAAGCCCTTCCTGACGGCCTCTGCCGCCCCTGCCACCGCGCCCACACCACGGGCGGCAACGACACTGCCGCACCCACCCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCACCAACCTCCGCAACCTCCTCAAGCCCGTCTAGCTCCCCGACCACCACACCCCTCGTCGGGCAGGCCGGGCTCACCGCACCCCCGGGCCACGCCTACGAAAGACAGAGCCGTACCTCTTGCGCCGAAGCCGGCCCGACCAGGCTGGCGGCGGGCAGAATGGCACCAGCCGAACCACACGTGACCACTCTGCGGCAGAAGGTGAGATATGTCGGATTCTCGAGAAGTAGGCAAAAGCCGCCTTCCCGCCACCTAAACCCCCAGGTCACGAAGG # Right flank : TGTCTCCAAATCGAGGAGCCTGCGGACCGGCCAACGCAGTCGGGCGCAGTGAGTACGGTCGCCCTACCTGCTTCGATACGGAAATCTACAAGCCCCGCAACGAAGTTGAGCTGACGGTCAACGACCTCAACTGGCTCCGTTCGGTGGCTGCGCGATGCGACTAGCGCGCCTACGTCTTCCAAGGAACCTCGCCCGCCGCAACGATCTGGCTCGGGCTTCGGGGGTAGATCCATTATCGCGCTCCGCGGAGGCGCTTGTCACCGTTCTCCGGAATGATCTTTACGCCCGTTATGCGCTCATAGGGTTACGGGGATCGAGCACGACATACCAACCTGATGTGGAGTCGAGAGTGGTACATGACGTTGCCGCACTGGCGAAGGAACTGACCGCCATGGCTGCGGCCGATCAACAGTCCTCAGCCCAAGCCAACAGCGATGATGTTGCTGAGCAGTTGGCATGGCACCGGCTTACCGCGCAGCACGGTGACCGGCTCGGTCAGA # Questionable array : NO Score: 3.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 4561160-4560070 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070260.1 Streptomyces californicus strain FDAARGOS_1210 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 4561159 30 96.7 31 ..............T............... CGTCTGCTTCGACCCGTCCGGGTGGATCGGT 4561098 30 93.3 31 ..............T..............A AGGCCGGCGGCGCAGTCGGCGGAACGGAGTA 4561037 30 93.3 31 ..............T..............C CGACGCCGCCAGCACCCTCCTGGAGCGCACC 4560976 30 96.7 31 .............................A TGCTGTTGAGCTGGTCGCGGATCTCCTGGTT 4560915 30 96.7 31 .............................C GGCCGCCCGTCGTGGCGCCGCTGGTGCGGCG 4560854 30 100.0 31 .............................. CGTCCGAGCCCAGCAGGGCGAGGAGGTCGTG 4560793 30 100.0 31 .............................. TCCGCGTCAAGGCGTCAACTTGGTTCGCGGT 4560732 30 93.3 31 ............................TC TGTCCCCCTTCCCTGTCCTCAGGCCCCGTAC 4560671 30 96.7 31 .............................G CGGCGGCGTTCGTGAAGTCGAGCCACCCGAG 4560610 30 100.0 32 .............................. CTCCGTCTCCACCAGCCTGCTGGAGAAGTTTG 4560548 30 96.7 31 ............................A. CTCTGGAGTCCGGCATCTCAACCGTCATGAT 4560487 30 100.0 17 .............................. GGTGCACGCAGAAACTT Deletion [4560441] 4560426 30 96.7 17 .............................C GCGCACGCGGGGGTGGT Deletion [4560380] 4560405 30 96.7 32 .............................C CCCCATCACAGCCGGTCGCCGGGGCTCAACCT 4560343 30 96.7 31 .............................G GAGTCGGCACTGTCCGCAGTGCTCACCCTCG 4560282 30 90.0 31 .......T.................G...G TGCCCGTGGGCCACTGCTCATCGAGCAGCGC 4560221 30 93.3 31 .........A...................A GGCGCTCCTGCGTCCACCCGGTGACCTTCGG 4560160 30 96.7 31 .............................G TGTACGTGGCGTCGCCGGCGCGGTCGAGGCT 4560099 30 76.7 0 .G....................CCCAG.G. | ========== ====== ====== ====== ============================== ================================ ================== 19 30 95.3 30 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : CTACGGGGCGCCCGCAGTCGAAGGCCGGGAGTGGTGGCGCGAGAGCCTGGATACGCCGCCGGAAAGGTCTCGGACCTTCTCCTACTCCGAACTGGCCGTCCACCCCGAGAAGCGGAAGCAGGGGCTGGCGGATGCCCTCTCACGGGCTCTCCTGGCCGGGCGGCCCGAGGATCTCGCAGTCCTCCTGGTGGACGTCAAGCACCCCCGCGTGCAGTCCCTGTACGAGGGCTGGGGCTTCCGGAAGGTAGGGGAGCGTCAGCCCTTCCCGGACTCGCCGGTCTACGCCGTGATGCTGGCCGACCTCCCGCTTGACGAGAGCCACGGAAGGTAGAGCCGCGCCTCTCCCATCGAAGCCGGGCCGATGAGACCGGATGGTGGGCAGAATGGCATCAGCCGAACCACACCTGTGACCACTTTGCCCCGAAGAGCGATATATGCCGGTTTCTCAACAAGTTAGTAAAAACCACCTCCCCGCCACCTAAACCCGCAGGTCACGAACA # Right flank : GAATGGTCGCGCAGCTCGCACCGTAGCCCGGACGAGGAACAGCCCACCGGGTCAGGACGTTTGGCCGTCGCCCTCGACGTCGTCTTCCCCTGCGCGTTGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGCGATGTGAAAGCTGTGACTGCCGGGGTGGTCCTCGTACAGTCCGCACCACTGCCGGTAGTTCTCGCGGAGGCGGTGGATGCGGTAGGGGCACAGGGCGAGGAGGACGAGCCGGTGGTGGACGCGATGGCCACCCGCACTCGTCGCCCACAGGAACCACAGACTCACGGGCGGTTCGGTCTCCGCGGTCCACAGCCGCGCCGCGTGCTCGGCGGTCTCGTCATGCTCGCCCAACTCGCATAAGACATAGGGCTTGTCGTCGAGGAGGTCTTCGGCGTCGTCGGGGCCGTCGTCCATGGCGAGCAGGGCGGGGAGTGCTTCGTCGTGCGGGAGGTTGGTGATGGCGGTGCATTGCA # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.12, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 4565170-4564653 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070260.1 Streptomyces californicus strain FDAARGOS_1210 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 4565169 30 96.7 31 .............................C CGCGGGCCTCCGCGTCCACGGCGAGAGTGAG 4565108 30 96.7 31 ...A.......................... CCATCAGCGGCACCCACGCGGGGCGCTGAGT 4565047 30 93.3 31 ...A.........................T CGCGGCGGTCATCGGGTTGCTGGGTCATGCG 4564986 30 96.7 31 .............................A GCGGCTTCGCGCTCGAATTGGGGGCGGAGGT 4564925 30 100.0 31 .............................. GCACCACACCGCTGGCCGCTCTGGCCGCCGG 4564864 30 100.0 29 .............................. CGTACGCCTGGCTCCAGCTGGAGGGCTAC 4564805 30 73.3 31 ...TGG...C...G...........C..TC AGGCGAACCGGAATTCGGTCTGCCCCGGCTT 4564744 30 90.0 32 ...........A.............C...T CGCGGCGGATGACCTGGCCCTCGGGATCGAGG 4564682 30 80.0 0 ......................CCAG.GT. | ========== ====== ====== ====== ============================== ================================ ================== 9 30 91.9 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CCAGCGCCTCCAACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGAGCCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCAGCGTCTCGATGCCCGGCCTCTGAAAGTCAACCGACGACGGTCGACACACACCGCAGGTTGCAACCGCCGACCTGCGCAAGCACCTCGGAAGACCGCCATACCGGCCCCGAAGGAATAGCCGCACCCCAAGCGCACACCATCAGCCTCCGCCACCCCCTCAACCCGTCGAACCCCAACCACGAAGCCCCTCCCGAAACGGGGTAGGCACACCGCACACCGGGGCCCAAAGCCACGAAAGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGACCGGGTGGCGGGCAGAATGGCATCAGCCGAATCACACCTGTGGCCACTTTGCCCCGGAGAGCAAGATATGTCGGTTTCTCAACAAGTTAGCAAAAACCGCCTCCCCGACACCTAACCCGCAGGTCACGAACA # Right flank : AATGGTCGCGCGGCCCGCACCGTAGCCCGGACAAGAAACAGCCCTACAGGTCAGGACGTTAGGTCGTCTCCCTCAACGTCGCTTCCCCCTGCGCGTTGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGTAATGTGGAAGCTGTGGCTGCCGGGGTGGCCCTCGTACAGTCCGCACCACTGCCGGTAGTTCTCGCGGAGGTGGTGGATGCGGTAGGGGCACAGGGCGAGGAGGACGAGCCGGTGGTGGACGCGGTGGCCGCCCGCACTCGTCGCCCACAGGAACCACAGGCTCACGGGCGGCTCCGTCTCCGCAGTCCACAGACGGGCGGCGTGCTCGGTGGTCTCGCCGTGCTCGCCCAACTCGCACAGCACGTACGGCTTTTCTTCGAGGAGGTCTTCGGCGTCGTCCGGGCCGTCGTCCATGGCGAGCAGGGCGGGGAGTGCTTCGTCGGGCGGGAGGTTGGTGATGGCGGTGCATTGCAG # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : GTGATCCCCGCGCACGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 4665251-4665524 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070260.1 Streptomyces californicus strain FDAARGOS_1210 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4665251 30 100.0 31 .............................. TCGGGTTGCGCAGCATCCGGGTAATGACAGC 4665312 30 96.7 31 .............................C GGTGGATCACCATGAGGTTGGCGATGCCGAG 4665373 30 96.7 31 ............C................. CGCCGTTCTCCTCCTTGAGGGTTCCGGCGAT 4665434 30 86.7 31 ...........TGG...............A GCAGGGGCAGGAAGTCCGGGACTGCGTCGCC 4665495 30 70.0 0 ..............GC.T....CT..GAAT | ========== ====== ====== ====== ============================== =============================== ================== 5 30 90.0 31 GTGGTCCCCGCGTACGCGGGGGTGGTCCCG # Left flank : CCGACAAGATCCCGCCCTGCCTCCCCGAGGCGGTGGAAGTCCGTTCGCCGGGCGCCACGGAACCGATCTACGAAACCCTCGTCGAATGCACCAACTGCCGCCGCCCAGGCCCATCGGAAGCCCTTCCTGACGGCCTCTGCCGCCCCTGTCACCGCGCCCACACCACGGGCGGCAACGACACCGCCGCACCCACCCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAGCCCGTCTGACTCCCCGACCACCACCCCCTCGTCGGGCAGGCCGGGCTTACCGCAGCCCCGGGGCCCACGCCTGCGAAAGGCCTGACCACAGCTCTTCCACCGAAGCCGGGCCGATGAGACCGGCGGCGGGCAGAATGGCATCAGCCGAACCACACGTGACCACTCTGCGGCAGGAGGCGAGATATGTCGGCTTCTCAAGAAGTAAGTAAAAACCGCCTTCCGAGCACCTAAACCCCCAGGTCACGAAGG # Right flank : TGCCGCTCCTCAGGTTCTTGCCGTGCTCACCGACATCCTTGCCGCCGTCGAGGACGGTGAGCGGGGGGCCTTGTGGAATCTCTCCGAAGGCGGGCGGGAGTTGGACGCCAATCTGGTGTGGCTGCCCGCCGGGGCCGAGGTCGGGGAGCATCAGGAGGACGTGCTCGATGTGTTCCTCGTCGTTCTGGAGGGCGGGGGCAGGGTGAAGGCGGCGGGCGGCCGTGAGCTGGGGCTGGAGGCCGGGGCCGTGCTCTGGTTGCCGCGTACGTCCCGGCGCGCGCTGGCCGCCGGGCCGGACGGGCTCGGGTATCTCACCGTCCACCGCCGCCGCCCCGGCCTCGCGATCTCCGCGCCGAGTGCGGCGTACGAGGGTGGCGAGGGGCCCTGCATGCTGGACCGGGTCTGCCCCGAGTGCGGGCGGCTGTCGCAGGATCCCGACCCGGTCTTCTGCAGCCGGTGCGGGGAGCGATTCCCCGAGAGGTGAGCCCGGCAGTGAGCCG # Questionable array : NO Score: 3.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGTACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //