Array 1 208-836 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGKF01000076.1 Helicobacter cinaedi strain PAGU617 entry76, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 208 36 100.0 30 .................................... AAACCCCATTCAAGATGAAAGCACCTATTT 274 36 100.0 30 .................................... GCAAGAGTTTCTTTTAAATAAAGATAGTAA 340 36 100.0 30 .................................... AAATTACTCGGAGTCCTCGCTTCACGCGGA 406 36 100.0 30 .................................... AACTGCAAACTTGGAATCTACTATGCTTTA 472 36 100.0 30 .................................... AAATTACTCGGAGTCCTCGCTTCACGCGGA 538 36 100.0 30 .................................... AAAATGTGAAGTGTGTGGGAATAATATTAA 604 36 100.0 30 .................................... ACTTGCGGACGAGATTTCATAGAATCTTTG 670 36 100.0 30 .................................... TTTTAAAATTTTAAGCCCTTGAGATACGCG 736 36 100.0 30 .................................... AGCTCCTCTTTTGAAGCATTCTCATTTTTA 802 34 86.1 0 ...................--.A.........T.T. | T [831] ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.6 30 GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Left flank : TAAGATTCTCTATAAAATACCAAGATGATTTACTCTATTTTAACACCTTTTACCTATCATTAAGGCATTAAAAGCCCTTGTGGCATTCCCTAGTTAGGCGTTTTTTGACATTTTGGTATGACTTGTTTGGATAGAGTTGCGTGTTTTAGGATATTTCAAGCTTTGAAAACGCTCAAAGCACACACTAGAGCCGACTTGGAAAAGTCAG # Right flank : CACTCTAATGCTTTTACTTGTTGTATCAAAGTTTGTCTATCTTATGTCATTACTAGGGCTTTGCCAAAGTATATAATCCACACAAACAAAAATCCTGTTATTTTTCTACAAAGTCTTGTAAGATTCTTAAATTTAGCTAGAATGCTGTGTTAAAAAATGACATATTTAAAAGGAAATAGATGAATAACTTCAGTAAGATTGGCTTTGTTTTGGCGACTTTGGGTAGCTCCATAGGCTTGGGACATATTTGGCGGTTTCCCTATATGGCGGGGGAAAATGGCGGTGGAGCGTTTGTTATCTTTTATCTTATCTTAGCCATTCTCATTGGTGCGTCTATGCTGATGGCGGAAATGCTCCTTGGCAATAAGGCCAGAAGCAATCCTTTGGATAATTTTACTATCCTTAATAATCTTAATAAACTTCCACCAAACACGCCCACACAAGAGCATAACACCACAGATTCTAAATCTAGCTCATCACTTATGTGGCTTGGCTTTTCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 15254-18335 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGKF01000165.1 Helicobacter cinaedi strain PAGU617 entry165, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 15254 36 100.0 30 .................................... GAAAATTTTTCTTATAAAGAGTATATTTCC 15320 36 100.0 30 .................................... TATGCTGGTGGACTTGATACAACTACGTCT 15386 36 100.0 30 .................................... CCTCTGCTGTTATAGACGCCGGTAACATTC 15452 36 100.0 30 .................................... AACTTTGAGCTTGTCCCTGAGTCAAAAGTT 15518 36 100.0 30 .................................... ATAAGTGTAGCCACATCTTATTCTTTCTAT 15584 36 100.0 30 .................................... GGCGTGTAGAAAGGTAACTTTTCAGTGATT 15650 36 100.0 30 .................................... CTCGTTTGGTTCTGGGTCTCTCTTTTCTCT 15716 36 100.0 30 .................................... TTCTGCTATCTGACACCATAGCGGTCAGTA 15782 36 100.0 30 .................................... AGTATATTGCTCCCGCGAAAGAATTTTTAA 15848 36 100.0 30 .................................... ATCGCCACGCTGTAATCGTTATCTGCCCCT 15914 36 100.0 30 .................................... GCAGAAAACGTCGATTTTTTATTCGCAGAC 15980 36 100.0 30 .................................... CTTGGACACTCACATGCATACATCATATTT 16046 36 100.0 30 .................................... AGTATATTGCTCCCGCGAAAGAATTTTTAA 16112 36 100.0 30 .................................... TCAAATTCAAGGCATATTGTGCCGGTAGCA 16178 36 100.0 30 .................................... ATATTTCCTTTTATGCTTGTGTATTCAATA 16244 36 100.0 30 .................................... CGGAGCTCAGTGGTATCGGTATGCAGGAAG 16310 36 100.0 31 .................................... ACCTTTTGCTCCCATATATCCGAGAACACCA 16377 36 100.0 30 .................................... CAGGCATTTGATGTTTCCGTTTTCTCGTTG 16443 36 100.0 30 .................................... TGATAGCACACTAGATTCTGCTAAGTGCTA 16509 36 100.0 30 .................................... GGTATGGATTCTATAATGACGACTTATTAT 16575 36 100.0 30 .................................... TAGTCAAACATGTCAAGCCCCCTCTTTTGC 16641 36 100.0 30 .................................... CCCGGAGCTTAGCGGAATCGGAATGCAAGA 16707 36 100.0 30 .................................... GATTGCTCGTGCGACACTGCATAATTTTAG 16773 36 100.0 30 .................................... TCCCCAGCGATGTTCTTCCATATCTTTCTC 16839 36 100.0 30 .................................... GTCTGCCGCGAAAATATGCAAGGAAGCGAG 16905 36 100.0 30 .................................... CCATTGCTTCTATTATCATATATGCCTTGT 16971 36 100.0 30 .................................... CCGGCAAGGTTGAAAACAATGCTGGAGGCA G [16984] 17038 36 100.0 30 .................................... GTCCGCATTGCTTTTCTTTTGAAATAAGTG 17104 36 100.0 30 .................................... AGTTTCATTTTGCGGATTTACCTTATAAAA 17170 36 100.0 30 .................................... ACCCCTATTTCACACATCTCGGCGTTTCTC 17236 36 100.0 30 .................................... TTCAAAAAATGAAAGAGGTTGCCACCTCTT 17302 36 100.0 30 .................................... GAGCAAAAGACGCTAACAAGTCTAGCGAGG 17368 36 100.0 33 .................................... AAAGACTTCTAGCAGATTCTAATTTTGAGATAA 17437 36 100.0 31 .................................... CCAAAAGATTTAAAACACGCGACCCGATAAG 17504 36 100.0 30 .................................... TGCTACTGCTTTGCAAAGAATGCAAGAAGC 17570 36 100.0 30 .................................... CATTCGGAAACCGACACGTCGACTGCCGCG 17636 36 100.0 30 .................................... CAGCTCGGTTTTAATGCGATTGCTCCAATA 17702 36 100.0 30 .................................... CTAAAAATAGTGAACAGCAGAGACAGTATT 17768 36 100.0 30 .................................... GGTCTCGGCCAAGCGCTAGAATCTCAAATG 17834 36 100.0 30 .................................... ATCTCTAAAATCTCTAAAACAATCGCAAGG 17900 36 100.0 31 .................................... AAAAGGATAGAGTTTCTCTACAAGGATATGG 17967 36 100.0 31 .................................... GCGGTGATAATTTTGGCGGTTCTCAAGCTTC 18034 36 100.0 30 .................................... TTGGAGCTATCATCATACAAAGTTTGTTGA 18100 36 100.0 30 .................................... CCAGCGCCATCAATCATAAATATCGTATTC 18166 36 100.0 31 .................................... ACATTTGAATAATCTGCGTTCGTGTGTGTTA 18233 36 100.0 31 .................................... CCGATATTTCTTTCAGTTCTGTCACATTCCA 18300 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ================================= ================== 47 36 99.9 30 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : CTTTTTTATGATGCAATTTAGCGTGTATATGAAAATATGCAAAGGGTTAAGCTCGGCAAAAAGCTCTCTAAATGCTGTAAAAAAGGTGCTTCCAACTTATGGTAATGTCCGCGCACTTATCATCACAGAAAGACAATTCGACAATATAGAAATATTATTAGGAAACCCATCATTTAATGAAAATGTTAATGAAGATAAAAATCTTGTGCTATTTGACTTTGACGAAAATGCGGGTGATTACCGCTATGGTATGGAGTATCAAAAACAAGAAGAATTGAATACAACTACTACACAACCAAAACAAAAAATCAAAAATAGGCAACCAAGCCTATTTGAATTCTAGGGTTTTGATAGGGATATGATTTACCCTGCGGAAGACCCCTTACTCCCTTATTTTAGTCCCTTCTTAAACTTCTATGTCGCGAATTATAAAGGATTTCAGGTAATTTCCAGCTTAAAATCCTTTGAAATCCCTATCTATAGGCACCAACAGAGAGCCG # Right flank : TTAGTGAGATTGAAGCCAATTGGATACGAATAATGGCAGAGCTAGAGACACAAGATGGCGATAGTAACACTTCACAGAGTGTGGTTGAGTCAAAGCAGAATTTTAATGCCCTAAATGACTTTAAAAGTTATGCTGATGAAAATCAAAAGCAAACAACAAATGGCTTTTCATTTGGCTCTGCGTTTTCTAAATTGAAAGAAAAGGGCATTGAAGCAAAAGAAGCCATTGAAAAAAAGCAGAATGCTAGATAAGGTTAAAGAAAAAACAAGTGAGCTGACAAACAAAGGACTTGAAAAAGGCAAAGGATTGATTGAATCTCAAAAACAAAAAGGGGCTAACAATGAGCGAGATTAAGAATAAAACATTTGAAGATAAGTGCAATTTGTTGGGCAATACACTGCTAAAAGTTAATGATATTTTATCTAGTGATTTTAGGAGAGAGCTAGAATCTTTGAGTCCTTCTTCTATGAGTATGGATAAAAAACTTTTATTGTTTTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //