Array 1 220210-218684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXYU010000004.1 Leptotrichia sp. oral taxon 223 strain F0708 HMT-223_F0708_contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 220209 29 100.0 36 ............................. TAAATTTATGAAAATTGGAAATACTAAAATAAATTT 220144 29 100.0 36 ............................. CCCTGTATCGTTTCACATCTTCCAAATCTGTGAATA 220079 29 100.0 36 ............................. TAAATTTATGAAAATTGGAAATACTAAAATAAATTT 220014 29 100.0 36 ............................. CCCTGTATCGTTTCACATCTTCCAAATCTGTGAATA 219949 29 100.0 36 ............................. TCATTAAAATAATATTGCCTACAATTATATATAGCT 219884 29 100.0 36 ............................. ATTTATAAACGATGGTGGTTTATTTTTTTAGTCGTA 219819 29 100.0 36 ............................. CTCATTTGGCTTTGCAATAGTCACTATTGTCTCGTT 219754 29 100.0 36 ............................. CATTATGACAAGGTTGAGAACATTACGGCATCAAAC 219689 29 100.0 36 ............................. TTGAAAGAAAAAACATTATAAAGAAACTCAATGCTA 219624 29 100.0 36 ............................. TTTTATCTCATCTCCTTGATATATTTTAAGTTATGT 219559 29 100.0 36 ............................. ATATAACCAAAGCGGAGTGTGGTTTTTGTATCAAAA 219494 29 100.0 36 ............................. TTGTAAGCAAGATTTACCCTACCTAGTAATTCGTTC 219429 29 100.0 36 ............................. ATTTATACATAAATGGAACAAACAATCTTGAAGGTG 219364 29 100.0 36 ............................. ACGATAGAGGAATAACGGATGATTTTCTTGATCTAA 219299 29 100.0 36 ............................. TTGGAAGTGATATAAATTTTGAAGTATATTTTATTT 219234 29 100.0 36 ............................. GTCCTTTAAATCTCTGTAAATTGCAGGAAACATTAA 219169 29 100.0 36 ............................. CAGTTTACAATGGTATCACATTTTTTACAAAGAGAA 219104 29 100.0 36 ............................. GGAAGACCAAATGCGCAATTTGACCCATTTGTGACA 219039 29 100.0 36 ............................. TACTTTTTTTAATTTGTCAAATTTTAACAATATATT 218974 29 100.0 36 ............................. TTTTCATAACGTGATAATGAAGATTCTGCATATTTT 218909 29 100.0 36 ............................. TTGGACATTCGGAATTATGCACAGGCGGCATTAAGA 218844 29 100.0 36 ............................. TTGGATTAATATGTTCCCGAGTTGTAAATGCCCCTC 218779 29 100.0 36 ............................. TTTGCTGTTCCGTGATTTGTATTAGTAAGAGTCAAA 218714 29 86.2 0 ..........C...A........T....A | AA [218691] ========== ====== ====== ====== ============================= ==================================== ================== 24 29 99.4 36 ATTTTAATAGAACATTTTGTATTGTAAAT # Left flank : TTAAAATATGGTGGTAGTATGTATATAATTTTAGTTTATGACATCCTAACAGATGACAATGGCCCAAGAATTTCTCGAAATGTATTTAAAATTTGCAAAAAGTACTTAACAAATGTTCAAAAATCAGTATTTGAAGGAGAAATAACCCCAGTTTTATTAAAAAAATGAAATCTCGAACTAAAACGATACATTCGCAAAGACAAAGACTCATTAATAATTTTCAAATCACGTCAAGAAAAATGGCTAGAAAAAGAATTTTGGGGATTAGAAGACGACAAAACCTCAAATTTTTTTTAACAATCCCAGAAAAATCTGTCGATGTCCAATAACTAAAAAATCCCTGAATATTGACAGATTTCCTAAACCATTGATTTTTACAACTTTTTTTGATATTTTTATTTTAAAAATAAAAAATTATTACCAAAATTTTATAAAAAAATTGGGTATCGACAAAAATTGAAAAAAATGATATGATATTCAAAAAGAGTAATAATGGTTTG # Right flank : TATTAATATAGTAAAAACGGCTGCACTTTTATTAATAAAGTATGGCTATTTTTAGTTTACAAACGCTTTTTCTTGTTTATTTTATTTGAAATTCTAAGAAAAATAGGTTAGAATATAATGATAAAAAGAATATTAAAATTTAAATAAGGGGGAATGCGGATGAAAAAAAATGTAGCGGCATTTTTTGATATAGATGGAACAATTTACAGGGATTCTTTGCTGATTGAGCATTTTAAGATGCTTGTGCAGTATGAATATATTGATATGATGACTTGGGAAGGGAAGGTTAAGGAGAAATTTTCTAAGTGGGAAAACAGGACTGGGGATTATGACGACTATTTGGATGAGCTTGTGCAGACTTATATGGAGGCATTAAAGAATTTTAGCAAGGAGGATATGGATTTTATTGCTAAAAGAGTGATGAAACTCAAAGGAGACAAAGTTTACCGATATACACGTGAGAGGTTGAAATATCATAAGGAAAAAAATCATAAAGTTAT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAATAGAACATTTTGTATTGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 229240-229464 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXYU010000004.1 Leptotrichia sp. oral taxon 223 strain F0708 HMT-223_F0708_contig4, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 229240 29 100.0 36 ............................. CTTTTATACTTTCTGTTATACCATTTTCATAACGTG 229305 29 100.0 37 ............................. GTATTCTTTTATTTCTGTCAAGCATGTAAGCCTCGAC 229371 29 100.0 36 ............................. ACCTTATCAGAAATATGTAAATTTAGGTTACTTTGA 229436 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 100.0 37 ATTTTAATAGCACAATTTGTATTGTAAAT # Left flank : GCTGACCATGTATAATTTTTCTGTTTTGCAGATCCAAAAAATTCTTCAAAAATTTCATTATCACATTTTTTCAGTCCTGTTTTTAAGACGCATAAAATTTTTGATCTCCAATTTATAGGAAAGCTGCTACCTTCTGTTAATTCAATATTAATCTTAAATCTCATTTTCTTATTGTACCTTTCTTTCCATTATTTTTTTCTTTGAAATATAATAATATATTATATCCTATTTTTTATAAAAGTAAATACTTATATAATAAACTTTTATTATTATTTAATAGATAATTTTCTTAGATATTAAATATTATTAATCTGTCGATGCCCAATAACTAAAAAATTCCTGTATACCGACAAATTCTTAAAATTACTGATTTTTATTGACTTTCTTAAATATTTTATTTTGAAAATAAAAAATCATCTTTTAAAATTTTTGGAAAAAATTAAGTATCGACAAAATTGTTAAAAAATGATATTATATTTAGGGTAACTAATAATGATATG # Right flank : TATATTCTCATCTAAAAATAGGTACATTACTGTAAAGAAATTATCACAGGCATTTAATAATAAACCAAATAATATAATATAATAGGTGATAGAAATGACAGAAGCATTGAGATAACAGAAGAAATTTTAAAGTAAATAAGAAGCGGTTAGAAAAAAGTGAAGATTAATGTATGCAGTGGAATTAAGAGGATTAGGTAAAAAAAACTGAAATATTGGGTGTCAATGAAAGAACAGAAAGGTTCGAGAAGTATACAAAGTTTTAATATGATGTAGCTACAGAAAAAGCCGACAGCAAAAAAAGCGGGCGATGAGGAAGTTAGACAGTTTAAGTGATTTGAGGCAGAAAACAAAAATAAAAAATCTAGATAAGACAGTAAGGCTGATGCTTTAAAATGAAGCAAACTTTGGAAGAATTGAACCGTGCATTATTGCTAATGCAATATAACAAGGTTAGTCCCTATATCTCCTACCAGCATAAAATTATAGCAGGATATTGTAAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAATAGCACAATTTGTATTGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //