Array 1 75553-73476 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUES01000001.1 Salinivibrio sp. ML323 scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 75552 37 100.0 37 ..................................... GGCGACGCTGCTAGCGGGCTGCCTGCGCGGCATGTTC 75478 37 100.0 37 ..................................... TACTGACAGCGGGATCACGTTCGCGACTACGCAGCCC 75404 37 100.0 34 ..................................... AACGAATCGCGCTGGATGAGATACTTAATCGCTT 75333 37 100.0 36 ..................................... GCGCTCGATCAAGTCGGCAACGTGTGGGAGTCTATG 75260 37 100.0 37 ..................................... AGAGTGATGAGCAGGCTGATAGTGTTGGTGGTGAAGC 75186 37 100.0 37 ..................................... TGGTCAGCATCAGCTCATCATTGAGCGTCGCTATCTG 75112 37 100.0 38 ..................................... TCGGCGATAGCGTCGTCCACCAGCACGCCGTTCGGCGC 75037 37 100.0 35 ..................................... CACCACTCTCGACGGTTGTCCTCGCTGCCGTCGTC 74965 37 100.0 38 ..................................... TCGCCGTTTAGCGCTTCGGCTGTCGCAATGTTTAAGAA 74890 37 100.0 34 ..................................... CAACCAGTCGCCTTTGTTGTCGATCTCTACCTCG 74819 37 100.0 35 ..................................... AATTCTCGCCGAATAGCACGGCGCCGACGCCTTGA 74747 37 100.0 39 ..................................... TTGCTGCTCGCCGCGATAAGCACATCGTCTGCGGCCTGC 74671 37 100.0 33 ..................................... AGCCATAGGCTGGATGGTCATGACTGGGGTGAC 74601 37 100.0 33 ..................................... GGTGACCGTGCCGTAAGCGATATCGGCGAATTC 74531 37 100.0 36 ..................................... TCGGCCACGTCGGACGGTGTGACTTCTCTGTATGAC 74458 37 100.0 35 ..................................... TTCCAAGTGTGCCTCGAAAGGATCGTCGGTAAGCT 74386 37 100.0 36 ..................................... ATTGGCTCATCGGGGGGAGCCCTTGGCTGCGGTCGA 74313 37 100.0 36 ..................................... ACACGCACCAAGATAGCCATCAATGTCGCAGCAAGT 74240 37 100.0 33 ..................................... TCCAATGCCGCACGAAATCACAAGTTTTCTTTA 74170 37 100.0 34 ..................................... ATTGGGTATATAGAGAAAACGGCACCAGGAGCCA 74099 37 100.0 37 ..................................... AGTTTGTGAACTGGCAATGGATGAAGTGAATGCGGAC 74025 37 100.0 37 ..................................... GCAAACACAAAACCGCCTTCAATGCCACGCAGGTAGT 73951 37 100.0 35 ..................................... CAGCCGGGGGCCACTGATGAAATGGCTTTATCCAG 73879 37 100.0 38 ..................................... ACGGCTTAACCGCAGCCACTGCGCCCTGCGCAATGGTT 73804 37 100.0 33 ..................................... TTTGACTAGCCTAGCCTCTCCGGCACTTCGTGC 73734 37 100.0 36 ..................................... ACAGGCCGAAGATGCCGCCGCACTGGCCGCCAACGA 73661 37 100.0 36 ..................................... GACTTCACCGGCCCTGTCATCGCGTCAATCACAAGC 73588 37 100.0 39 ..................................... AGTTAGCAAAAAACGGCTTTTCGACATTCCACCGCATTA 73512 37 97.3 0 .......................C............. | ========== ====== ====== ====== ===================================== ======================================= ================== 29 37 99.9 36 GCTTCAGAGCCTATCTCAACAAGTCAGCCACTGAAAC # Left flank : AACGCGCATGTGCAAGCGCTATCGTTAGGTATTCATGGTTATATCGACGAGCTAATCTTCAATGAAGAAAAGTGTGTGGTCGTGGAGTATAAAGTGGATAAGGGTAAACCTACCGATGCGCAAAAGGTCCAGCTGTACGCCTATATGCTTGCTGCGGAGCAAACTTATCAACGGCAAGTGGTTGCGGGCGTATTACTAAAAGGCAGCGCAAATAAGCAGTACACGATCACGCTAGATGATAAAATAAAGAACAAGTGCCTAACCACACTCCATGCGGTGAGGCAAACACTCTCCAGCCATCGTATGCCGCATTCAAGCGCAACAGAGAGCAAATGCGCACAGTGCGAGTACTTGAGATACTGCAATGACAGATGAAGATTATTTTGGTGTCAGCGCTATGTTCGCAAAATATAGCCATTTTATGACATCAAAGCGGTTTGCGAAAAAAATAGGCGCTGAGCCCCTAATAACTTGCTGTATCAACAACAAAAAATCAGGGG # Right flank : GTTGGCTGGAAAAGCACAGTAAGCGAGAGTTTGGCCGTGCTTCAGAGCTCACCTCAGCAACTATTCAATCGACTAGATACAAACTGCACACCAAATAAAATTTATAAAATAAGTCTATTGTGTCAACTGTTATGCTTATACTCCTGTAGGTCAGCCCAAAACTCGTCATTGAGCAGCCAAGGATTGACATCTAGTACGGCAGGTTGAAACCTGACCATTTCTTGATATGCCTGGATCAATACACTGGCAGCCTTTTCCATCGACATATCATAGGTGTCGAATGTTTCCACAGTATGAGAGATAAGATAGTCTTGCCACTCTTCCGAAAGCCCACCAAACCAAACATTCGAGCCAATTCGTCTCAGACTTTTCTCGGCAGCTGATAACTCATTATTATGGGGTAACGGGTCGTCCATAATCACCTCTTTATTTTACCTGGTTGCATATAAAGCTTCGGTTTCAGGATAGATAAATTTGTTTTTATGTTCATCTCTCTGATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAGAGCCTATCTCAACAAGTCAGCCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 1846-558 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUES01000043.1 Salinivibrio sp. ML323 scaffold43.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1845 28 100.0 32 ............................ AACTGCCAAAGCTGGCTAATGAGCGCGTTAAT 1785 28 100.0 32 ............................ ACGCTCAACCACGAGCGAGCCAAGTTCGGTTT 1725 28 100.0 32 ............................ AATCATCGGTATTCGTGACCGCGCCAATGCCG 1665 28 100.0 32 ............................ TTCTGCCCCGTCCAACGCGGCGGCGGCTGCCT 1605 28 100.0 32 ............................ GAGAAGATAAAGAAACAGATCGCGGACTTAAG 1545 28 100.0 32 ............................ ACAGTGAGAGATTTGCAGGGGCGCGGCATCAA 1485 28 100.0 32 ............................ GCGAGTCGCGGCATCGCTTGATAGAATCGGGC 1425 28 100.0 32 ............................ ACGATGTGTATCCCAAGGCTTGTCATGTGTAT 1365 28 100.0 32 ............................ GTCTAACGCGGCGGCGGCTGCCTCGTCGTCAC 1305 28 100.0 32 ............................ GCCATACGCTGCGCATACCGCTCAAACTCCAA 1245 28 100.0 32 ............................ TGATGATTTAGGAGCGTAAGACATGCCAAACA 1185 28 100.0 32 ............................ TGATGCAATCAAAGAGTTTGGCATCACTAACT 1125 28 100.0 32 ............................ AAAACGGCAAGGAGACGCAGTTTAAAGGGAAA 1065 28 100.0 32 ............................ TGCATCCACCTCGTCAAGCATTTTATCTAACA 1005 28 96.4 32 ...........T................ TCTCTTGCTGGTAGACGCGCCCCCAGAAAGAA 945 28 100.0 32 ............................ TTGATGCGGTGAATTTTATCAACGGCAACGAG 885 28 100.0 32 ............................ ACGTTGGCGTTCAATTTCTTTGATATGGTTTC 825 28 96.4 32 .............T.............. TGATCTTGCTGATAATATTCAAACCATTCCTT 765 28 100.0 32 ............................ CCGCGCACTTTCTTGGCCTGACCGTTGAACTT 705 28 96.4 32 .............T.............. TGCGAAAAGTACGGCTCGATGCTTTCGCCGTT 645 28 96.4 32 .............T.............. ATCGAAAATTTGTAATTAATTGCGGTGATTAA 585 28 82.1 0 ...........G.........G...GTG | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGGTGCAAGACTATGCCTACTTTAAACGTTGGAACTACAAATCGCCGCAGCGACTGTATAAAAACCTCGATCGGCGCGCGGCCGCGATTGCCAGCAAAAATGGTTACGATGAGGCGGAAGTAAAGCGTCGTTTGTTGGAAAACATTAAAACGGACGACAAACGCTGGTCGCTGCCTTTTATTCAAGTCACCAGCCTGTCGAGCCAAAAACGAGCAGGGCGTACGGAAGAGTTTGCTTTGTATATCGAGCGGGAGACTACCAAGCAGCCGCCAAACAAGGACCAACCGTTCACCTGTTATGGGCTAAGTCGACGCGAACCCGACCAGCAATCTGCGGTACCGTGTTTTTGAGGGGGAAACCCCTCTTTACCCCTTCTTTTTGGGCTCTTTAAAAATAAACTTTAAATACAGCTAGTTACGGCAGGCCGTTTTTAACAAGGGTAAAAGACGATTTTTATCCTAACGGCCTGTTGTAACAGATGATTGTTAGGTTATTCTATA # Right flank : ACACAAGCCCCAGCACGATTTTGGATAGGTGCACATTGCCAACGGGCGCCTGTCACGATNCGCATAGGCAGCTTAGAAATGCGAAAAGTACGGCTCGATGCTTTCGCCGTTGTTCACTGCCGCATAGGCAGCTTAGAAAATCGAAAATTTGTAATTAATTGCGGTGATTAAGTTCACTGCCGGACAGGCAGCGTAGGTGACACAAGCCCCAGCACGATTTTGGATAGGTGCACATTGCCAACGGGCGCCTGTCACGATCGAGGTCAATCGTTGGCCTCAATGTCGGAGGCGCCAGTTGCACTGCGCGCGGCGCAAATCACACCAAGCTTGTACGATCGAGTTYGCGCTTGTCCGACCTACGCATAGGCAGCTTAGAAATGCGAAAAGTACGGCTCGATGCTTTCGCCGTTGTTCACTGCCGCATAGGCAGCTTAGAAAATCGAAAATTTGTAATTAATTGCGGTGATTAAGTTCACTGCCGGACAGGCAGCGTAGGTGAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 534-327 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUES01000007.1 Salinivibrio sp. ML323 scaffold7.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 533 28 100.0 31 ............................ CAGAACTCGGCTATGTACCTATTAAAACCAG 474 28 100.0 32 ............................ ACCACATGCTGCACGGCTTTGTCGAAACTCAT 414 28 100.0 32 ............................ TTGCGGATTCTATAGGGTGACTGGTCTCGCTA 354 28 82.1 0 .............T.......G...GTG | ========== ====== ====== ====== ============================ ================================ ================== 4 28 95.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCTGTCACTGTTGTCACTTTTTGGCTGATTTAAGTTTGTACTGTGTCTTACAATGGCTACGCATCACGTGCCTGGAACGCAGAGCGGTATGTTTAGTTTTACGCCCGCGAGTCCGTTCGCGCCATACTTTGAAGCTCCGCGGTTTTAATTCACGTCGCATTAACGCAATCACATCGTCTTGGCGTAGCCCATAGAGTGCTTCAATCGCCTCAAACGGGGTTCTATCTTCCCACGCCATTTCTATAATTCGGTCAATCTCTCCCGGTTGTTCGTTCAATGCCATGTCGGTCTCCTTGTGCTGGTGGCCAATAATACGCGTAGAGTTGGAAAAACCGATCAGCGTGTTCCTTCTAACCCATCAATGCTGGTACCCTTGTTTTTGGGCTCTTTAAAAATAAACTGCAAATACAGATAGTTACGGAAAGCCATTTTTAACAAGGGTAAAAGATGATGTTTATCCTAACGGCCTGTTGTTACTGACGATTATTACGCTATTCTAT # Right flank : GACACAAGCCCCAGCACGGTGTTGGATAGATGCACATTGCCAACGGGCGCCTGTCACGATCAGGGGTTAATAGTTGGCTCCGATGTCGGATGGCGCGCGGCGCAAATCATACCAAGTTTGCACGATCGAGCTGGCGCTTATGCCGACCTACGCGAACTTTAACGTCGGTGGTACCATTGGCGTAGGTGACACAAGCCCCAGCACGGTGTTGGATAGATGCACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCCTCAATGTCGGATGGCGCAGTGCAACTGGCGCCAGTTGCACTGCGCGCGGCGCAAATCACACC # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 690-421 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUES01000052.1 Salinivibrio sp. ML323 scaffold52.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 689 28 82.1 32 ..C...CTA..G................ TCGCTGTTTGAACTGGCACGGCGAGCCGTGGA G [685] 628 28 96.4 32 ....................G....... GGCCAAAATCCGTCATTGCCGATTTTGGTGTT 568 28 100.0 32 ............................ ATAATATTCATGTTTGGTTTTATCTTAATAAA 508 28 100.0 32 ............................ ATGTGCAGCCACGGCCAACGGACGCGCCCGAA 448 28 85.7 0 .....................G...GTG | ========== ====== ====== ====== ============================ ================================ ================== 5 28 92.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATCGAGTTGGCGCTTATGCCGACCTACGCGAACTTTAACGTCGGTGATGTTATTGGCTTACATTGGTTATCGGAACAGCCACTTTTGGCCCGATGATACCATTGGCGTAGGTGACACAAGCCCCGGCACGGTGTTGGATAGGTGCAAATTGCCAACGGGCGCCTGTCACGATCAGGGGTTAATAGTTGGCTCCGATGTCGGATGGCGCCAGTTGCACTGCGCGCGGCGAAAGTCATACCAAGTTTGCACGATCGAGTTAGCGCTTATGCCGACCTACGCGAACTTTAACGTCGGTGGTACCATTGGCGTAGGTGACACAAGCCCCAGCACGGTGTTGGATAGATGCACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCCTCTCGAGGTTAATCGTTGGCCTCAATGTCGGATGGCGCAGTGCAACTGGCGCCAGTTGCACTGCGCGCGGCGCAAATCACACCAAGCTTGTACGATCGAGTTAGCGCTT # Right flank : GACACAAGCCCCAGCACGGTGTTGGATATGTGGAAATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCCTCAATGTCGGATGGCGCAGTGCAACTGGCGCCAGTTGCACTGCGCGCGGTGCAAATCACACCAAGTTTGTACGATCGAGTTAGCGCTTATGCCGACCCACGCGAACTTTAACGTCGGTGGTGCCATTGGCGTAGGTGACACAAGCCCCAGCACGATGTTGGATAAGGGGACATTGCCAACGGGCGCCTGTCACGATCAGGGGTTAATAGTTGGCTCCGATGTCGGATGGCGCCAGTTGCACTGCGCGCGGCGAAAGTCATACCAAGTTTGCACGATCGAGTTAGCGCTTATGCCGACCTACGCGAACTTTAACGTCCTTTAACGTCGGTGGTACCATTGGCGT # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3712-1281 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUES01000052.1 Salinivibrio sp. ML323 scaffold52.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3711 28 100.0 32 ............................ GGCCGATGTCTTTTACCTTGCGTTCCTCGGTG 3651 28 100.0 32 ............................ TTATTTCGAGGATTTGTTCCAAGAAGCGGTGA 3591 28 100.0 32 ............................ ATAAGGAAACCCCGGATTTTGTTGAACTAGAC 3531 28 100.0 32 ............................ AAATCAGCGAATTACGCGACACGCTCAAGCAT 3471 28 100.0 32 ............................ ATAAGGAAACCCCGTTTGTATTGTTGACTCGA 3411 28 100.0 33 ............................ CTGCCGCGGTTGCGTATGCTTTTTGCTGGTCGA 3350 28 100.0 32 ............................ GCGCGCGAGAGCTTTATCAGCTAATAGTGTAG 3290 28 100.0 32 ............................ GCAAGACAGACCGCATTAACGGCCAGCTTGTG 3230 28 100.0 32 ............................ TAGTCGTCAAGCACAACTGCTTGGTTGACCTG 3170 28 100.0 32 ............................ ATGCAGAATGGAAAGCAAATCTTGAATGGGTG 3110 28 100.0 32 ............................ ACTGAAAATACCATTCAAAATCAGGTCATTCA 3050 28 100.0 32 ............................ CCTAAGCGCTCAGAAATCCAGTGAAGCAAAAA 2990 28 100.0 32 ............................ CAAATACTGTTCGTGTAGTTTAGCCTCTACTC 2930 28 100.0 32 ............................ TTGAGGCCGGTGCCAGTAAAAAGACACGTTAC 2870 28 100.0 32 ............................ ACAAAAAGCTGGTGCATTTCGTCGAGCTCTTC 2810 28 100.0 32 ............................ AGTAGTCTGTCTGAGATTGGTAAGTAGTGTCC 2750 28 100.0 32 ............................ CACAATTTCATAGTCAAAATCAAGCGATTCTG 2690 28 100.0 32 ............................ ATTCACGAACGGCAAGACGCTGTTCAATGGGA 2630 28 100.0 32 ............................ GTGTATCATTTGGTCAGTCACATCAAGATGCA 2570 28 100.0 32 ............................ ATTGGCTCATGGGGGGGAGTCCTTGGCTGCGG 2510 28 100.0 32 ............................ CGTGAGCTCGATATTCAGGAACTCACGAGCAA 2450 28 100.0 33 ............................ CTCCGATCACGCCGTTGTCCTTGTTGACGTGGT 2389 28 100.0 32 ............................ TGCGGCACTTGGTTTGTCATAGTCCGCCCTCT 2329 28 100.0 32 ............................ AAACTGCATCGCGATCACTGGAACGACTATCG 2269 28 100.0 32 ............................ GTCGAGATCGGCCAGATACCTACCAGATCATC 2209 28 100.0 32 ............................ CAAAAGAGCGATTTTGAGCAGTTCGCGCAGCG 2149 28 100.0 32 ............................ GTTATAGGTGTTTGTATGAGTGTAAAGCATAC 2089 28 100.0 32 ............................ TTATTTTTTCTATAATTGCGCTTATTTTTATG 2029 28 100.0 32 ............................ TATAACGGTTAATAGTTTATTTATCTAAAACA 1969 28 100.0 32 ............................ GTTTACCGTGTGGCGGACGGCTCGGACATTCC 1909 28 100.0 32 ............................ TTTCTGAAAAACTTTCAGCCCTAGTTGACAGG 1849 28 100.0 32 ............................ TTCAACCTCTTCAGGGCGAAAGCGATCTTTAC 1789 28 100.0 32 ............................ TGACCGAAGACCAAGCGGCCGACCTGTCAGAC 1729 28 100.0 32 ............................ AGTCTGGTTTGGCGTAAAAAACTGCACATTGC 1669 28 100.0 32 ............................ TTCCGCCAGCGCGTACGCTTGCAGATTCTGCG 1609 28 100.0 32 ............................ GTGAGCACACCGATCCGGGTGCGCACGGTCGC 1549 28 100.0 32 ............................ CGCTAAACGTTGACAGTAATATTGACTGGATT 1489 28 96.4 32 .............C.............. TCCAACACGGCAAGCATTTTGATCACTTGCTC 1429 28 96.4 32 .............C.............. TGTGGAAATTTACCGACCCCAAATCCCTCAAC 1369 28 96.4 32 .............C.............. GATGAAACAAAAGAAGTCGGCAGCACCCTGAC 1309 28 96.4 0 .............C.............. | G [1283] ========== ====== ====== ====== ============================ ================================= ================== 41 28 99.6 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TTGTCGTGGGGTCCGTCGCTCATAACGTTTTAACTTACCAAGTTTGACTTCTTCAGATGCAATCAGGGCTTCTTGCACAAAGCTATAGGGTAAATCAGGGTTCTCAGTCATGATTTTCCCGATTTTTGCCCAGTATTCAATTTGCTTGGGCACAGAGCGCATTTCAGCTTCTGCATGCACTTTTACATCTGACACAAACTCATCATCTAACCGTACACTGGTTGGCATGATTCATTACCTCGTCTATAAATCTTCACTGGTTAATATGCGACAAAATGTCGCGCCTTGCAATATATTTAGAACTGGCACATCTGGCGTGACTTAAGACGGCTCTGCTTCAACATATGTGATAAGTTGATACCCTTGCGACCCTTCTTTTTTGGCTGTTCAAAAATAAACAATAAATACAAAGCGTTACGGAAAGCGATTTTTAACAAGGGTAAAAGACGATTTTTATCCTAACGGCCTGTTGTAACAGATGATTGTTAGGTTATTCTATA # Right flank : GATTAACGACCTGGCCGTCTGCCACGATCGAGGTTAATCGTTGGCCTCAATGTCGGATGGCGCGCGGCGTAAATCACACCAAGTTTGTACGATCGAGTTGGCGCTTATGCCGACCTACGCGAACTTTAACGTCGGTGATGTTATTGGCTTACATTGGTTATCGGAACAGCCACTTTTGGCCCGATGATACCATTGGCGTAGGTGACACAAGCCCCGGCACGGTGTTGGATAGGTGCAAATTGCCAACGGGCGCCTGTCACGATCAGGGGTTAATAGTTGGCTCCGATGTCGGATGGCGCCAGTTGCACTGCGCGCGGCGAAAGTCATACCAAGTTTGCACGATCGAGTTAGCGCTTATGCCGACCTACGCGAACTTTAACGTCGGTGGTACCATTGGCGTAGGTGACACAAGCCCCAGCACGGTGTTGGATAGATGCACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCCTCTCGAGGTTAATCGTTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //