Array 1 218635-216737 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDTK01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain inss27 scaffold_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218634 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 218573 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 218512 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 218451 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 218389 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 218328 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 218267 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 218206 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 218145 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 218084 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 218023 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 217962 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 217901 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 217840 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 217779 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 217718 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 217657 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 217596 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 217535 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 217474 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 217416 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 217355 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 217294 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 217233 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 217172 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 217111 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 217050 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 216989 29 100.0 11 ............................. CGGCCAGCCAT Deletion [216950] 216949 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 216888 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 216827 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 216766 29 93.1 0 A...........T................ | A [216739] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 236533-234917 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDTK01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain inss27 scaffold_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 236532 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 236470 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 236409 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 236348 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 236287 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 236226 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 236165 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 236104 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 236043 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 235982 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 235921 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 235860 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 235799 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 235738 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 235677 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 235616 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 235555 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 235494 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 235432 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 235371 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 235310 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 235249 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 235188 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 235127 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 235066 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 235005 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 234944 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //