Array 1 29-613 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAJN01000011.1 Prevotella pleuritidis JCM 14110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 29 47 100.0 30 ............................................... GCCTCTTGCAGGAAGTGTACTGCGTGTCTT 106 47 100.0 30 ............................................... AGCCTTTACTTACTGCAGGCGCGAATTTAT 183 47 100.0 30 ............................................... AATGTGCTTGATGATAAATTCGAGCACGAG 260 47 100.0 30 ............................................... AGTCTTACTCTCAATCATCACCTCATAATG 337 47 100.0 30 ............................................... ATACGTTTAATTTTGATTATGCCCGAACAT 414 47 100.0 29 ............................................... TGTATAATGAATTTTGTTAGTTATGATTA 490 47 100.0 30 ............................................... CCAGAGGTCGCGTGTCTCCTGCAAGATGCG 567 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 8 47 100.0 30 GTTGTGATTAGCTAAAAAATTAGTACCTTTGTGGGGTAAACAACAAT # Left flank : ATAAATAGTTAATATATGTATTATCAATG # Right flank : TATAGTTTGTATAATATACTGTGGGATAAGGACTTATTGTTGATTTTACAGAAAGAAAAAATTGTTGTATTGGAATGTGGAGATTCTATGATAAATTGAATTTCCACATTCTGTTTTTAGAATAATTCAAGTTGCTGACCAGGTGCATTCGGTCTTTTTTCTTTCTTGCAAAAGAAGATCTTAATATCTGCAAATTGCTTGTCAGTGATGCACATAATACCGACATTCCCTGCCTCTGGTAGGATTGATTGTATCCTTTTGATATGTACTTGAGCGTTATCCATACTGGCACAATGGCGTACATAGATGGAGAATTGGAACATTGAGAAGCCGTCCCCCATTATATCTTTACGAAATTTCGCTGCCATTTTGCGCTCTTTTTTCGTTTCGGTAGGAAGATCATAAAAGACGAGCACCCACATAACTCTGTATTCATTGAATCTGTCGATCATTCTATTTCAGGATAAGCAATCTTTCTTGATTCTCCATTAAAACATTTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTAAAAAATTAGTACCTTTGTGGGGTAAACAACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 86979-87332 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAJN01000012.1 Prevotella pleuritidis JCM 14110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================ ============================= ================== 86979 46 95.8 29 ...................--........................... CGCGTTTAGATCTATCACGAGGTGAGTTC 87054 48 100.0 29 ................................................ AGTTATTATTTAATTCTTGCAAGAAGTCA 87131 48 100.0 29 ................................................ TATATCAAATATAATTTGTATCTTTGTAT 87208 48 100.0 29 ................................................ TGTTAGCGAGGAACAAGGCAAGAAGTCTC 87285 48 100.0 0 ................................................ | ========== ====== ====== ====== ================================================ ============================= ================== 5 48 99.2 29 TGTTGTGATTAGCTAAAAAATTAGTACCTTTGTGGGGTAAACAACAAT # Left flank : ACATTCTATGCCAGCATTCAACTCTTTGCCCCCGATGTATGGCGCCATTTCTATTACCATCCACCCTCAATCCATTCTCTGTCCCGCCGCTTTTAGCTATCTTTCTGGCTTCGGTGTGGGCGATGCTGATCACAGCTCTGGCCGTAGTCGACGATGTGCGCCATCAGCTTCCGTTTCGCTTCGCAGTGATGTACCTCTGCGGTTTAGCCGCCGTTTGTGCTGTTGCCTACATTATCTTCAGTCTCACCACTTTATATTATGTCGGCTATCTGATACTCATCGCCTATTTCGTCTTTGCCCTCCGTTGTTATTTCACGCACAACCGAGCCTATTATCTCTGCGGAAACTGTGGTGCCAAGCTCCGCCACAAGGGCCGTTGTCCGCGCTGCGGAGCCATCAACAGATAGATGTTCAGCGTGAAGTGATTATCGAAATCTTTCTTTAAAGCTCCCATCAATACATCTCATCTTTGATTGTCGGTTATTTGTGGTTTCTCCACC # Right flank : T # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:-0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTGTGATTAGCTAAAAAATTAGTACCTTTGTGGGGTAAACAACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.75%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 128275-128903 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAJN01000005.1 Prevotella pleuritidis JCM 14110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 128275 36 100.0 30 .................................... GAATCCGCCGGAGAGAAGTTCGCACTTTTT 128341 36 100.0 29 .................................... AGACATCAAGGAATTAGAGGCTCTTTTCT 128406 36 100.0 30 .................................... AGACATTCGCACACGGGAATATCGAAAACC 128472 36 100.0 30 .................................... ATTTTTTGTTCCTTCGATATCTTCCTCACC 128538 36 100.0 30 .................................... GCAATCTGTTTGCACAAGTCGACTTTCTGT 128604 36 100.0 30 .................................... CGAACGCTGGACTAAGCCAACGTGCAAACT 128670 36 100.0 30 .................................... ACAACTCTGGTTCCGTCGGCATAGGCTCAA 128736 36 100.0 30 .................................... ACAACTCTGGTTCCGTCGGCATAGGCTCAA 128802 36 100.0 30 .................................... AGCGAAGCAATATTCTATATCGTCATTACG 128868 36 97.2 0 .............C...................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 99.7 30 GTTGCATCTGCCTTCTATTTGAGAGGCACAAACAAC # Left flank : TGAAAGTATTGAATGTGCAAAGTATGAAGCTATATTGAAGGCGCACCAAAGCATTTATAAATTGCTTAGGTTTATAACAGATACGGAAAACGACGACTGCATATTGGTGTGGGAGCAGCCTAAGGGCGGTGGAGAGAAAACTTATTACTTCAGACAAGCCAATATACGCAAGTTTATAAAAGAGCTAACCGAAGAGATATACAACAAGGGCAATGGCATCTATCTATCAAAAGAGGTTATGTCGCTGATATTTAAATATAGAACCCTTGTTCATAAACTTTTGCTTGCTAAAAAGAACAACCCCGATGAGAAGATAATGATAGATAAACGAGAGCTTGCAAAGAGAATGATAGAAATCCATCAAAACCTCTCAATAAAAATCAGAGAAGCTATCAATTTACAGCAACGGGATTTACATTTCAAATAATCTAAAAGAAAAGAATTTATATTGAAAAAGAAAGGGACAAAGCATATTAGAATCAGGCATTTAAGTTATTTGA # Right flank : CAATATTCCCTACCATCTACAGCTTAATTTAGACCGAAACAAATTTATGTCAATAACTTAATTTACTTCAGCTTAGAATAAGCCATAACCTTAGATTTATGTATAACTATATATAACTCGCTTGATGATAAGTCCTATACTTCTGCCCCACAAGTATAGGACTTATCGTGAAGAAGTCCTATACCTCTCATCTAACACAAATAGTTTCTAAAAACCTACGAAAGGAAAGAGGAATCTACGAGAATCAGAGATTCCTGTTATTAATCTACGCCAATTCGGAATAAGAAAGTAACCGAAAAGCGACTCTATCATTTATCTGCGAATAGAAAGAGAAGATCTTTTTGTGAGAAAGCGGCTCAATCCATCGGAAAATAAAGAAAAAGAAATATTCTCAAGACGACAAGGAAGCGTTAATAAATAAGATATATTCTCTCTTTCCATTGGGAAGTGCAAATAAACAAAAATAAATTTCTTCTTTCCATTTAGAAAGTGTAAATATA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGCCTTCTATTTGAGAGGCACAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //