Array 1 15297-15466 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE951522.1 Actinomyces johnsonii F0510 Scaffold112, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================================== ================== 15297 27 96.3 43 ...C....................... TTTCTGACCGTTAGGGGCTGCACTAAGCGTATAGAAGATTTGT 15367 27 100.0 46 ........................... CTTCTGACAAGGAGTCCCCAATGGGAGACCGATCCAACATCATCGT 15440 27 96.3 0 .............C............. | ========== ====== ====== ====== =========================== ============================================== ================== 3 27 97.5 45 CTTAATGCACCTTGTGGTGCTGGGTGC # Left flank : AGGTGCCCTTGGGGATGCCGAAGCTCAGGAGCGGGTCGGGCTCGTAGGTTCCTGATCGCAGGGACTCGGAGAGCTCGGTGAGGAAGTCATCGAGATGCTCGGCGAACTCCTTGGTCTTCTTTTGCAGGATGCCGTCGGAGGCGTCCTTGGCGAGGACCATGCGCCAGCCGTCCTCCAAGCCCTCGTGGGAGCTGATGCGCTCGAACGGGGTTCCGGTGGTCGGCTCGGACAACGTAAATCCGGCTGCGTGCTGGAGTGGGTGAATGTCCTCCCCGAGGTGCTGGCCCGGTTTCGCGCGATCGGAACGACGGCGACGACGGTGCGGGCGGGGTGGGGATGGCCGTGTCGTTGACGATGGTGGTGGTAATGGCGGGTCTGGACGCATCATTGCGGCCTCTCAAGGGTGGGAACGTGAAGAAACTCTGAGAACAGGATATCGAGATTCTGGCGGACAAGGGAGAAAATCGGCGTGCGGTGTCCCGGCGCATGTCGATATATGC # Right flank : CTT # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTAATGCACCTTGTGGTGCTGGGTGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 5380-5621 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE951666.1 Actinomyces johnsonii F0510 Scaffold468, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================================ ================== 5380 26 100.0 48 .......................... GCAACAAGGAGGTGTGGTTGGGTGAGCAAGCGGGCTGATTTTGGCCTC 5454 26 100.0 45 .......................... GCAACACCGGCCCATGCCTCCCGGCTGGCAGTGACGCGGCGCCTC 5525 26 100.0 45 .......................... GCAACTCGACGACGAAGTGGGGTCAGCAGTGGTTTAACAAGCCTC 5596 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ================================================ ================== 4 26 100.0 46 AATGAAGTGCAGCTCCCGAAGGAACT # Left flank : AACGCGTTTGCAGTCACCGCCGGCGAACGACGGCCGCCTCGCATCGGCGGTCCCCCGTTTAAGAATCCGGTGGTAGTCCTTCATCATCTCGACGCTGATCGTGCCGGGTCTGGGAGAAGCTGCGGGCGTCAATGGCGTACTCGTCGATCATGACAGTTCCTTCCTCAGCGCCGTCGACGCCGATCGGTTGTTCACCGCCTTGCCCAGCGCCCTGGAGGGGGCCAGGCGCGCCTGTGGGGTGGCACATGAGAAGGCAGGCGGGAATCGAAAGCCGAAATAGGCATCTCAATTCCCGCCTGCCTCAGTGAAGTGCAGTTCCCGAAGGAACTGCAACTCCGGTCTCCTTGTCCATGGCCGTGGCCGTGAGCTCGCCTCAATGAAGTGCAGCTCCCGAAGGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAGTGCAGCTCCCGAAGGAACTGCAACTAGCGGCCGCGGAAGCGAGAGAGTCCTCAGCCATCGTGCCTCAATGAAGTGCAGCTCCCGAAGGAACTGCAACGAGCCGGAACTCGGCCCACACCTCGACTGGACCGTCGCCTCAATGAAGTGCAGCTCCCGAAGGAACTGCAACGTGTCCTCAGGGCTGGCGGCGAAGAGCTCGCCGACGCCTCAATGAAGTGCAGTTCCCGAAGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAAGTGCAGTTCCCGAAGGAACTGCAACGTCGGGGAAGGCGCGGGCGAGTTGACGCAG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATGAAGTGCAGCTCCCGAAGGAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 6126-6663 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE951666.1 Actinomyces johnsonii F0510 Scaffold468, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 6126 36 100.0 38 .................................... ATCGCTGCCGCGAACGTCCGTCCAGTCCATGTATAGAT 6200 36 100.0 35 .................................... GACGCCGGGCCGGTGAGTCACAATGTGCAGAGGCA 6271 36 100.0 34 .................................... AATACGTCTTATCATGGCTCGCGCATTTTAAATT 6341 36 91.7 35 A................C....A............. ACCAACCGGTACACGACCAAGACGCTCCGGGTGCA 6412 36 100.0 38 .................................... ATCGCTGCCGCGAACGTCCGTCCAGTCCATGTATAGAT 6486 36 100.0 35 .................................... GACGCCGGGCCGGTGAGTCACAATGTGCAGAGGCA 6557 36 100.0 35 .................................... GATGACGTACAGCTCTACGGGGAGATCGGCCTCGA 6628 36 97.2 0 .................C.................. | ========== ====== ====== ====== ==================================== ====================================== ================== 8 36 98.6 36 GCCTCAATGAAGTGCAGTTCCCGAAGGAACTGCAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAGTGCAGCTCCCGAAGGAACTGCAACTAGCGGCCGCGGAAGCGAGAGAGTCCTCAGCCATCGTGCCTCAATGAAGTGCAGCTCCCGAAGGAACTGCAACGAGCCGGAACTCGGCCCACACCTCGACTGGACCGTCGCCTCAATGAAGTGCAGCTCCCGAAGGAACTGCAACGTGTCCTCAGGGCTGGCGGCGAAGAGCTCGCCGACGCCTCAATGAAGTGCAGTTCCCGAAGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAAGTGCAGTTCCCGAAGGAACTGCAACGTCGGGGAAGGCGCGGGCGAGTTGACGCAGGTGAC # Right flank : GCGGCGAGTTATCGCCGTGGACAAGAAGCGGCAGGAGCCTCAATGAAGTGCAGCTCCCGAAGGAACT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGTGCAGTTCCCGAAGGAACTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 4-703 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE951524.1 Actinomyces johnsonii F0510 Scaffold1140, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.6 32 ............................G CGCAAGAATGTTTTATCCACCATTGAAGAGTT 65 29 96.6 32 ............................T ACGCTCAAGCACCTCAAGGTATGTGAGCCCGT 126 29 96.6 32 ............................T AAGTCGCACAAGGCTAAGTCTTCCTCTAAGGC 187 29 96.6 32 ............................G CAATGATGCATGTGACACGCGTCATCGAACAC 248 29 96.6 32 ............................G CGGGGGTGCGACTCCCCCGCCGGGCACGACAC 309 29 96.6 32 ............................G AAAGGCGACCACCTGTGAGGCTGGCGTCGTCC 370 29 100.0 32 ............................. GGCACGGCCCATCACTGTCCTCCGACTCACAG 431 29 96.6 32 ............................T CGAGCGACGCGAACGGCCATAATTGGATCAAG 492 29 100.0 32 ............................. CTGATTGGTCCGGGTTGAGGCGCCCCGGCGCC 553 29 100.0 32 ............................. GTAAGGTCAACAGTGCCGCGTTCAACTCCCAA 614 29 100.0 32 ............................. TCAGTGACATTAGCGAGCACGTATGAGTTTGG 675 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.0 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : ACAG # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTAAACCCCGCGCGAGCGGGGATGATCCGCGTTGGCCCATTACCCGCTTTTTATGGAAGGGGTAAACCCCGCGCGAGCGGGGATGATCCGGGTGTTACTGTCTGGCACGAACCGCTCAAGGAGTAAACCCCGAGCGAGCGGGGATGATCCGTCCCCACCCAATCCCCGGGAGGAACACTGAAAGTAAACCCCGCGCGAGCGGGGATGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAAACCCCGCGCGAGCGGGGATGATCCCGCTGTTCGTGGGACCTTGGGCCTACGTGTCGTGTAAACCCCGCGCGAGCGGGGATGATC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [3.3-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 805-1016 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE951524.1 Actinomyces johnsonii F0510 Scaffold1140, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 805 29 100.0 32 ............................. CGTTGGCCCATTACCCGCTTTTTATGGAAGGG 866 29 100.0 32 ............................. GGTGTTACTGTCTGGCACGAACCGCTCAAGGA 927 29 96.6 32 ..........A.................. TCCCCACCCAATCCCCGGGAGGAACACTGAAA 988 29 93.1 0 ...........................NN | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTAAACCCCGCGCGAGCGGGGATGATCCG # Left flank : ACACGTAAACCCCGCGCGAGCGGGGATGATCCGAAAGGCGACCACCTGTGAGGCTGGCGTCGTCCGTAAACCCCGCGCGAGCGGGGATGATCCCGGCACGGCCCATCACTGTCCTCCGACTCACAGGTAAACCCCGCGCGAGCGGGGATGATCCTCGAGCGACGCGAACGGCCATAATTGGATCAAGGTAAACCCCGCGCGAGCGGGGATGATCCCCTGATTGGTCCGGGTTGAGGCGCCCCGGCGCCGTAAACCCCGCGCGAGCGGGGATGATCCCGTAAGGTCAACAGTGCCGCGTTCAACTCCCAAGTAAACCCCGCGCGAGCGGGGATGATCCCTCAGTGACATTAGCGAGCACGTATGAGTTTGGGTAAACCCCGCGCGAGCGGGGATGATCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAAACCCCGCGCGAGCGGGGATGATCCCGCTGTTCGTGGGACCTTGGGCCTACGTGTCGTGTAAACCCCGCGCGAGCGGGGATGATCCCTACGGCCCGTCCCATTACCCATGGTCTTCGCGTGTAAACCCCGCGCGAGCGGGGATGATCCGCGCGAGTGGGAGGCTGAGGACGTCCAGTGGTTGTAAACCCCGCGCGAGCGGGGATGATCCCCCCCCGATCAGTCTGGTTTCGGGGATTGCTCCAGGTAAACCCCGCGCGAGCGGGGATGATCCGGTCGCGCGCGCCCCGCGCCGAATAGTGGATACGTAAACCCCGCGCGAGCGGGGATGATCCCGCCGTAGGACTCACTGTAACCGGCCGTGAGCGGGTAAACCCCGCGCGAGCGGGGATGATCCTCA # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1176-2104 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE951524.1 Actinomyces johnsonii F0510 Scaffold1140, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1176 29 100.0 33 ............................. TACGGCCCGTCCCATTACCCATGGTCTTCGCGT 1238 29 96.6 32 ............................G CGCGAGTGGGAGGCTGAGGACGTCCAGTGGTT 1299 29 100.0 34 ............................. CCCCCGATCAGTCTGGTTTCGGGGATTGCTCCAG 1362 29 96.6 32 ............................G GTCGCGCGCGCCCCGCGCCGAATAGTGGATAC 1423 29 100.0 33 ............................. GCCGTAGGACTCACTGTAACCGGCCGTGAGCGG 1485 29 96.6 32 ............................T CACGCAACGTCATCCGCTTTTATGGGCAGTGA 1546 29 96.6 32 ............................G GAACTCGCCATGACTGCCACCGACACCATCAC 1607 29 79.3 12 ..................CA.G..G.TG. CGAAGCAGGCGC T [1627] Deletion [1648] 1649 29 100.0 32 ............................. TGGAAGATCGGGACCACGATCGGCATGAGAGC 1710 29 96.6 32 ............................T GGGCAGGGCCGGAGCTTCACGGTCGAAGCGGA 1771 29 96.6 32 ............................T AACGTCGTGCGCGTTGGTTGTGAACTACATAG 1832 29 96.6 32 ............................G ACGACGAAGACGAAGAAGGCGCACTCCGATGA 1893 29 100.0 32 ............................. GCCCGGCGCCCCACCATGGGGCGCCGGGCACC 1954 29 96.6 32 ............................T TGAAGTCCTGGGGGGGCATTGCTTCTCCTTGT 2015 29 96.6 32 ............T................ ACCGTTGACACCCGAATTCGGGTGCTATAGGA 2076 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================== ================== 16 29 96.6 31 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : TAAACCCCGCGCGAGCGGGGATGATCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTAAACCCCGCGCGAGCGGGGATGATCCGCGTTGGCCCATTACCCGCTTTTTATGGAAGGGGTAAACCCCGCGCGAGCGGGGATGATCCGGGTGTTACTGTCTGGCACGAACCGCTCAAGGAGTAAACCCCGAGCGAGCGGGGATGATCCGTCCCCACCCAATCCCCGGGAGGAACACTGAAAGTAAACCCCGCGCGAGCGGGGATGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAAACCCCGCGCGAGCGGGGATGATCCCGCTGTTCGTGGGACCTTGGGCCTACGTGTCGT # Right flank : TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCCGCGCGAGCGGGGATGATCCCGCCCGGTCCTTACCGCCAGAGTCACGACAATCGTAAACCCCGCGCGAGCGGGGATGATCCCACGCACACACGCGCGCACGCACGTAATACAACGTAAACCCCGCGCGAGCGGGGATGATCCCGACCGGCCCTTGCCGTTACCCATGGTCTTCGCGTAAACCCCGCGCGAGCGGGGATGATCCGTTCAACTCCCGCAACGCCGGAGCGATCCTGCGGTAAACCCCGCGCGAGCGGGGATGATCCGCCGTCTGGACATTACCGGACTATGTTCCCGCGGTAAACCCCGTGCGAGCGGGGATGATCCGTGCAGAGAGTCCTTTCTGGTCCGCTTATTGAGGTAAACCCCGCGCGAGCGGGGATGATCCCTCGACGA # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.10, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2263-2718 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE951524.1 Actinomyces johnsonii F0510 Scaffold1140, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2263 29 96.6 32 ............................C ACGCACACACGCGCGCACGCACGTAATACAAC 2324 29 96.6 32 ............................C GACCGGCCCTTGCCGTTACCCATGGTCTTCGC 2385 29 100.0 32 ............................. TTCAACTCCCGCAACGCCGGAGCGATCCTGCG 2446 29 100.0 32 ............................. CCGTCTGGACATTACCGGACTATGTTCCCGCG 2507 29 96.6 32 ..........T.................. TGCAGAGAGTCCTTTCTGGTCCGCTTATTGAG 2568 29 96.6 32 ............................C TCGACGAGGCGGCACCCGTCGGGCTGGACGTG 2629 29 96.6 32 ..........T.................. CGAACTGACGGGCTTGTCCGTTGATTTCCTGC 2690 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.9 32 GTAAACCCCGCGCGAGCGGGGATGATCCG # Left flank : GAAGCGGAGTAAACCCCGCGCGAGCGGGGATGATCCTAACGTCGTGCGCGTTGGTTGTGAACTACATAGGTAAACCCCGCGCGAGCGGGGATGATCCGACGACGAAGACGAAGAAGGCGCACTCCGATGAGTAAACCCCGCGCGAGCGGGGATGATCCCGCCCGGCGCCCCACCATGGGGCGCCGGGCACCGTAAACCCCGCGCGAGCGGGGATGATCCTTGAAGTCCTGGGGGGGCATTGCTTCTCCTTGTGTAAACCCCGCGTGAGCGGGGATGATCCCACCGTTGACACCCGAATTCGGGTGCTATAGGAGTAAACCCCGCGCGAGCGGGGATGATCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCCGCGCGAGCGGGGATGATCCCGCCCGGTCCTTACCGCCAGAGTCACGACAATC # Right flank : GGACAAGCACGGGATGTCACTGCTGGACAAGGGGTAAACCCCGGGTCAAGTCTCTTGATGTGGTGTAGAGGTCTTCGTGGAGTGTGGTCGTTAGCTGGTGAGAGAGGGGGTGTTGGGTAGGTTTCGGCTGCGGTTGAGAACGTCGAGGCTGAGGTAGCGGCGTCCTTCGGTCCACTCATCGGTCTGCTCTGCTAGGACGGCGCCAACCAGGCGGATAATGGCGTCCCTGTTGGGGAAGATCCCTACTGAGTCGGTGCGGCGACGGATCTCTTTGTTGAGGCGTTCTTGGGGGTTGTTGGACCAGATCTGTCTCCATACCTCGACAGGGAAGGCGGCGGTAGGCCAGCAGGTCGGCTCGTGCGGCCTCGAGGTGGTCGGCAGCCTCGGGCAGGATCGTGTGGACGTAGTCCAGGAGGCGGTCGAACTGAGCCTCGACGGCTGCTGCGTCGGGCTGGTCGTAGACGCCAGTGGAGCATGGCCTTGACCGCGGGCCACAGACT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : GTAAACCCCGTGCGAGCGGGGATGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9478-11763 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE951527.1 Actinomyces johnsonii F0510 Scaffold1161, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9478 29 100.0 32 ............................. CGAGACAGGCCCTGCATGCCTCCGGAGGGGCA 9539 29 96.6 31 ............................A AGATGTTTATCGTCGCCCTAAGGGCGAACTG 9599 29 100.0 32 ............................. GGTGGGCGGGACAGGCCCGTCGCCATGCTGGA 9660 29 96.6 32 ............................T GCGGTTGATCCGACGCCGGAGGTATCGCCGGA 9721 29 100.0 33 ............................. GCCGCGGAATGGATGAAGTCCAGGATCATGAAA 9783 29 100.0 32 ............................. TCGAGCCCCAGGTTGGTGACGCCGATCTTGAC 9844 29 100.0 32 ............................. CTGGATGATGAGATCAAGCTTACCTTTACCCG 9905 29 96.6 32 ............................C CTCGCCCCCGTAGACGGCCAGAACGGTCTCCT 9966 29 100.0 33 ............................. GGCGTGTATATCGCGTCTTTTACGAAATCTGGC 10028 29 96.6 33 ............................C GCGTCATGCCACGCGCTCATGAGCACCGCGGTA 10090 29 96.6 32 ............................T GCGGGCACCGGCGTCGAAAATCTTGACGGCGG 10151 29 100.0 32 ............................. TGCACGAGTGGAGCGGCGAAGGGGCCGACGGA 10212 29 96.6 32 ............................T CAGCTCGTTCACCCAACCATGCCCGGGGTCCG 10273 29 100.0 32 ............................. CGGTACTCCCAATGACCGCCCCGACCGTCGGT 10334 29 100.0 32 ............................. TAGAGGCGGTGGACGGGGTGCGGGAAGCCTGG 10395 29 96.6 32 ............................C GCGGTCTGCGCCGCGGCCCCGAACTTGATCGT 10456 29 96.6 32 ............................C CGGCTACTCCCTGAATGCCCCCGGGTACGCCG 10517 29 100.0 32 ............................. TACTTAGAGAGCGGTGAGTGACATGCCTACCG 10578 28 93.1 32 .....-......................C CTATCCAGCGGCAGGGTTTCCAGGTCGATGCC 10638 29 100.0 32 ............................. CTCTGAGTGACCGGTACGAGCACGACTCGGGC 10699 29 96.6 32 ............................T AACGTCGTGCGCGTTGGTTGTGAACTACATAG 10760 29 96.6 32 ............................C CGCGGCCTCCAGGGACGGGTGCAGGGCGCTGG 10821 29 96.6 32 ............................C ACCGTCTACAAAGACGGCATCAAGAAAACGGC 10882 29 100.0 32 ............................. AAGCGCAGTGAGCTATGTCATCGAACGTGTGT 10943 29 96.6 32 ............................C GGGGCAAACGGAGACGCACTAATAACCTCCCA 11004 29 100.0 31 ............................. GGGGAGATTACCCGCCCCATAGTCCGGCCCG 11064 29 96.6 32 ............................C ATGGCGATTGATGACTGCCTGCCGAGCACGAC 11125 29 96.6 32 ............................C CAGGGCGGCCTCACCGTCACGGTCCTGGCAGA 11186 29 96.6 32 ............................C GCTTCGTGGCATTTTTGAAAAGGGTGTTACTG 11247 29 100.0 32 ............................. GTGCGTTCGGTGGTCTTGGTGGCTATATGCAG 11308 29 100.0 32 ............................. TCACGTCGGGGCACAGCGCCTCAACTATCTCC 11369 29 96.6 32 ............................T GTGACAGGAGAATTAGGCTCCTCAAGCGGCAT 11430 29 96.6 32 ............................C GTCGCGTTCCTGGGTGCCTCCGTGCCCCCCTA 11491 29 96.6 32 ............................C AATGACGTCAACCCCGGCAAAACCTCGGCCAA 11552 29 96.6 32 ............................A CGGACGGCGGCGCACCAGCGCAGCCCACTCGG 11613 29 100.0 32 ............................. CGGGTCAACGTTCTCCAGCTCCGCGAGGTACA 11674 29 96.6 32 ............................T ACAAGTCGCAGTCCCGCGGGATTTACGGCGTG 11735 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 38 29 98.0 32 GTAAACCCCGCGCGAGCGGGGATGATCCG # Left flank : GCAGCGTGCTGTAGCCGGTGGAGCGAACTACGCCGGAGAGGACGCAGGAGGATGGTAGTTCTGATCCTGTCGGCAGCCCCCGCCTCGTTGCGGGGATCCATGACCCGCTGGCTGCTTGAGGTCTCTCCCGGGATCTTCGTCGGGCATCTCTCAGCTCGAGTGCGAGAGCAGCTGTGGGAACTGGTCCGCACATACATTGGGGAGGGGCGGGCGCTGTTGATCTGGTCGGTGCGATCTGAGCAGCGGTTCGCGGTCGCCTCCCTGGGGCATGAGTGTGAACCTGTCGACATCGAGGGGTGTCTCGTTATGCGCAGCCCGTACCGGCAGATCGGGGGAACGCAGGCGATTCCCGGTGCCGTTAAGCCTCCGAAGGGGTCATGGTCGATCGCCGCAAGACGACGGCGCTACCGGAACTCGGCGGAGCGGGCTCTAGGTCGGCACTGAAGGTAAACGCGGTCTGGTAGCATGGCTCATCGTTGGGATTCCAGGGATCCGCAAGT # Right flank : GAA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6384-5684 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE951603.1 Actinomyces johnsonii F0510 Scaffold336, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 6383 28 100.0 33 ............................ GTGCGCGGGACTGCGGGTGTCCCGGTTGATTCT 6322 28 100.0 33 ............................ GTCGGGGTCCTGCCGCCGTCACCCCCATTTTAG 6261 28 100.0 33 ............................ GTCGGGGCGCGCCTGCGCCTCCAGTTTAGGGCG 6200 28 100.0 34 ............................ CGGGTTACGGGCGCGACGCCGAGCCGTACATGGG 6138 28 100.0 33 ............................ GGCCCCCGGTTTCGAGGCGCGCAAGCGTTTCGC 6077 28 100.0 33 ............................ CGTCTCATCCGCCGTCCGCGTCCTGTGTGCCGT 6016 28 96.4 33 ............C............... GTGACTTTGTGCCATGTGCCGTGGGATTCAATG 5955 28 96.4 33 ............C............... GTCGGCGCCGGGCATGCCGGAGTCGGATGTGTG 5894 28 100.0 33 ............................ CGTCGCATCATCGAACCGGTGGCATGACGTCCA 5833 28 92.9 33 ...G........C............... GAGCGGCCAGCCGGGCCAGTGATCGCTAGTGAG 5772 28 96.4 33 ............C............... GCAATCCGTGGGTTCAGGAGCCTGCGCCGCCTG 5711 28 85.7 0 ............C..........CC..A | ========== ====== ====== ====== ============================ ================================== ================== 12 28 97.3 33 GTCAGCCCCGCGTACGCGGGGGTAGAGG # Left flank : GGGCGGGCTGGATGCTGCCACTCATCGGTGGGCTGGGCCGCCGCCACCTGCCCGTCCTGCGGGGGGTGCTCGTGGCCGGGGGGCCTCGGCCTCCCTGCGTGGGACTCGCGGTGAGAACGGGGGTGGTTGAGGCGAGACTTGCCGAGACCAGGACATTGGCTTCCCTGCCTCGAGTTCTGCGGGCTGCCACGGCTCCTTTGTCGCAATGGACCACCGTTGTGCCGACGGCGGAGGATCCTGAAGGCATCATGCGCATGCTGAAGAAATGCGCCTCGGGGCTCGGCTGCGGACTCGTTGAGGTTGAGCGGCACTCCGAGTCGCGAAGCGACGGAGGCATTGATGTGCAGGAGGACAACGGGCGCTGGCACGTCTCGGTCGCCTTCGACGCGGTGGTGCCCGGGCCGGTTGTCTTCGACGGCGCTCTCATGGTTCCCCTGGGGGCCACCACCTTGGCAGTGAACCCAAGGAGACCCCGAGCCGACTAACATCGCAGGTTAGCC # Right flank : CACGGACATGCGGCTTGCGCTGTGCTGGGCCAGGTCCGTCGGCCCAGGATGCCTATTGCACGAGGTTGGGGTTGTACTGGCCAGGGGCGGCCGGGGTTGATCGAGAACGTACTTCTTCCGCGAGAACTGCGTTATCCCGCAGACGACTGGGGGCAGACCCCAGTCGTCTGCGGGAAAAGTACGTTCCCGAGGGGAATCGCAGTTCCCGATGCGCGAGCCTGATCTCTGCGTCGTCGGAACGGTCGCCCGCCGCCCCGCCGTGCCGGTCTACTTGGTGGGGGTGCGGCCCAGGGTCAGGTAGCCGGGGAGCGTCTGGTCCTGGCCGGCGCTGGAGAACCGCAGTGGCTGGCCCGATTCCAGTGGGTTGACCACGCGCACCAGGATCGTATTCTCACCCGCCGGGTCCTCCGGGAGCTGGCCGGAGAAGGTCTGGGTCTTGCCGACCTCGATCTTGCGCAGATCGCCACTGAGCGTGGTGCGCCCGACCTCCACACCGGTCT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCCCCGCGTACGCGGGGGTAGAGG # Alternate repeat : GTCAGCCCCGCGCACGCGGGGGTAGAGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //