Array 1 1606877-1606379 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP065726.1 Neisseria cinerea strain FDAARGOS_871 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   1606876	    36	  94.4	    30	............A.........T.............	GTACCGGAGCCGCGTTTGCCGACACGGATA	
   1606810	    36	 100.0	    30	....................................	ACTTTCTAATTTACAACGCCTCCACCTATT	
   1606744	    36	 100.0	    30	....................................	AATAATGACATCGCGTTTAATCTCTTCTTC	
   1606678	    36	 100.0	    30	....................................	CCGCATGGTCGAATGGAATGCATGCGGAGA	
   1606612	    36	 100.0	    30	....................................	GGCGTGAACGGTGCTGATAAGGCTGTTGCA	
   1606546	    36	 100.0	    30	....................................	ATTGTTTTAATTGCCTTTAAAAGGACGATA	
   1606480	    36	 100.0	    30	....................................	TTCTATCTCTTGGGGTGTGAAGTGTTGTCC	
   1606414	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
         8	    36	  99.3	    30	GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   AACGGCGCAGCGATTGCAAACGCAGGGAAGAACGCGACATGGCAGGACTGTCCGAACGCATGGTGGCAGAGTTAGACAAGCACGGGGCCGCCGTATTTTTCCGAGAATATCCGAATGCCAACCACGGCAATGTCCCGTTCCACTCGCTGACCGACTGCGTGGAATATTTGAGGAAGGCTTGGCAGAGGTAGGGAATCAGGGGTGGGCATAAAAGGCTTATCGCAAGGTTGGAAGCCAAGAAGACCAAAAAAGCCGTTATCGCCGCATTGATGCGTAGGCTTGCCGGTACATATCACATAGACAAGAAAATCGAAGATGACGGCTCATCGCGTTATAAACCAGCGTAAATCCCGATAAGAAAAAAGGCATTTCTTTTGAAACGCCCGCCTTGCTGTGTGTAAAATCCTTTCAATTTTAAGGATTATGTTATCGATCAAAGGAGTATCTTTTCCATTTCGCAGTGCTATAATCGCCGGTATTTACACCGTAGGCATAAGCTG
# Right flank :  ACCTCAATGGGAAATCCTTATTATGTAAGGGTTTCCCGTTTTATTTGTTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGCCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCGGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAAGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGAAGAAACCATTTTGTCGATGGCGGCCAAGGTG

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.90,-0.40] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.68,4.5   Confidence: HIGH] 

# Array family : NA
//