Array 1 96019-94708 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALBZ010000007.1 Escherichia coli strain M-17 NODE_7_length_124456_cov_70.2897, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 96018 29 100.0 32 ............................. TTTCAGAAAAGTACGGCTCAATTGATCGCCCC 95957 29 100.0 32 ............................. CGCTGGTGGCGGAAAACAGCCAAAATAACGCA 95896 29 100.0 33 ............................. TGGATTAATCCGCGGCTGGCGATATCTCGCAGC 95834 29 100.0 32 ............................. CCCCTGTCGCCGTTGGCGGATTCTTTCCTGTA 95773 29 100.0 32 ............................. CGATAAACGCTCAATACCAGCCGGAATAATCG 95712 29 100.0 32 ............................. GCGGAATCTGCTGCGCACAAGTTACACGGCGC 95651 29 100.0 32 ............................. CCTTGATCGGATTCCAGAAACGAACCACTAAA 95590 29 100.0 32 ............................. TCGTTTAGTGTGGAATTTGGCGACGCGGAGCG 95529 29 100.0 32 ............................. TTTAGCTAATATTGGGCGGCTAACGTCATCAA 95468 29 100.0 32 ............................. GTTAAATATTGTTCACCATCATGGATCAGGAA 95407 29 100.0 32 ............................. CATGAACATGGACGATGAAAAAATAAGGGAGG 95346 29 100.0 32 ............................. CATGAACATGGACGATGAAAAAATAAGGGAGG 95285 29 100.0 32 ............................. AATTAAATGATTTTGATGCGCGCCGACTTGAA 95224 29 100.0 32 ............................. CCACGCGGCTGCATTCAGTGATATCCAGTTTG 95163 29 100.0 32 ............................. CATCTATTTATCTCGCCGCGATTGGCGATAAC 95102 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 95041 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 94980 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 94919 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 94858 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 94797 29 96.6 32 .A........................... GGCGCACTGGATGCGATGATGGATATCACTTA 94736 28 72.4 0 .AA........C..T....T-.G.....C | C [94711] ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 122359-121720 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALBZ010000007.1 Escherichia coli strain M-17 NODE_7_length_124456_cov_70.2897, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 122358 29 100.0 32 ............................. ATACGCCCCAACCAGAAATAAATTTAGGGGAT 122297 29 100.0 32 ............................. CAATATTCACAATGTGGGATATATCCGATCAC 122236 29 100.0 32 ............................. CGACCGCGTGGGCGTCTACGTGGGGGATTAGA 122175 29 100.0 32 ............................. TGGGTCATGCCGGTGATCGCCTGCCCGTCGTG 122114 29 100.0 32 ............................. GCGGCGCAGGGATTCGTACAGTCAAAAACGCC 122053 29 100.0 32 ............................. AGTTGGGGCGGCGCAATAACGAGACGATACGC 121992 29 100.0 32 ............................. GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT 121931 29 96.6 32 ................T............ TCAACGCGCTCAGACGTTGCGTGAGTGAACCA 121870 29 100.0 32 ............................. AAATATCCAGGGCTGGGCTGGAGGCAGACGGC 121809 29 100.0 32 ............................. CCCGGAATGCATTCTGAAGGTTTGCTGTATAT 121748 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAATTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATAAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACTGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //