Array 1 1779-165 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXMS01000004.1 Salmonella enterica subsp. enterica serovar Muenster strain BCW_1601 NODE_4_length_431357_cov_0.423693, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1778 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 1717 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 1656 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCAGTCG 1595 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 1534 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 1473 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 1412 29 96.6 32 ............................T GAGCCAGACTGAATTTTATGAAGAAATAGGTA 1351 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 1290 29 100.0 32 ............................. AGCAAAAAACGTGGCCGCACGAACGCGGCCAG 1229 29 100.0 32 ............................. TTTGGTGATGCGATCGCCCCTTGTTCAATGAT 1168 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 1107 29 100.0 32 ............................. CCAACGGTTTCCGTTGGCTTTTCACCTTCAGC 1046 29 100.0 32 ............................. CGCCCCTACAATACATCCTGATACAACAACCG 985 29 100.0 32 ............................. TTCTGGCGGCAGAGATAGTTAAAATAGTTGCA 924 29 96.6 32 ............................A AAAAACGGGCGCTGCGGGTCATTTTCGAAAGC 863 29 96.6 32 ............................T GACTCATACTCGTCTGCGCCCTGCGCGCAAAA 802 29 100.0 32 ............................. GCTAATTTATAAATCAAGTTAAAGCTTGATTA 741 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 680 29 100.0 32 ............................. TCTACGGGCGCACAGCGAAAACTACCGAGGAG 619 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 558 29 100.0 32 ............................. ATTTAATTGCGTCATAATATTAATTCCTGTAT 497 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 436 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 375 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 314 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 253 29 96.6 32 ............T................ TACCAACAATTCCGCGTTACGCCAACGGTAAC 192 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTAGATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16562-20314 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXMS01000012.1 Salmonella enterica subsp. enterica serovar Muenster strain BCW_1601 NODE_12_length_179505_cov_0.441072, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16562 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 16623 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 16684 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 16745 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 16806 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 16867 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 16928 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 16989 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 17050 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 17111 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 17172 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 17233 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 17295 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 17356 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 17417 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 17478 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 17539 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 17600 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 17661 29 100.0 32 ............................. CGCATTCAAATGCCGCGGCATGACCAGCAGCA 17722 29 100.0 32 ............................. AATTGGTGTGGCCTGGCTGAAATGTCGGGCGC 17783 29 100.0 32 ............................. ACCCCGCATAGTCCTTGTCGTATAAATATTGA 17844 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 17905 29 100.0 32 ............................. CGCCCACCCTGAGTATTATCACTACTCCGGAC 17966 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 18028 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 18089 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 18150 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 18211 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 18272 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 18333 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 18394 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 18455 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 18516 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 18577 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 18639 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 18700 29 100.0 32 ............................. TTTGGAAACCATGCCTGATCGCCAATATCTGA 18761 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 18822 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 18883 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 18944 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 19005 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 19066 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 19127 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 19188 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 19249 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 19310 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 19371 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 19432 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 19494 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 19555 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 19616 29 100.0 32 ............................. ATATCCAGCGGGGTTTTATGCTGTCGGTAGAG 19677 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 19738 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 19799 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 19860 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 19921 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 19982 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 20043 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 20104 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 20165 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 20226 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 20287 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 62 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //