Array 1 68849-67889 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALXM01000021.1 Neisseria meningitidis 93003 NM93003.contig.20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 68848 36 97.2 30 ........G........................... AAACTCAACGCATCTAACATAGTTCACACT 68782 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 68716 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 68650 36 100.0 30 .................................... GCCCACACGCCGCCTAGCACGCCGCCGAGA 68584 36 100.0 30 .................................... TTGGCAGTACCACCATTGACCTTGACATAC 68518 36 100.0 30 .................................... AGTTTTTAAATTTTTGATTTTGATTTTTTT 68452 36 100.0 30 .................................... ATTTTCATAGTCATTAGCTTCATAGGGTTT 68386 36 100.0 30 .................................... GCTCATCATGTTGCGTGTTATAGTAAGGCA 68320 36 100.0 30 .................................... CTGCAGGCGTCAGAAAGTGATGTATACACT 68254 36 100.0 30 .................................... TATATACATTTTTCAATGTTAAACATTTTG 68188 36 100.0 30 .................................... CCGTAACTTTTCCAGCCTATAAACCCTACA 68122 36 100.0 30 .................................... TTCGCAACCGGCTGGATGCTGATTAAAGAA 68056 36 100.0 30 .................................... AAAATCCGCAAAGAATACGGTAGTAAACGT 67990 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTTG 67924 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : TGGCAATCATGGCTTGGGCGGTTTGCCGGAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAATAATAGTTGGTCTGAATTTACCCTTTTTTCTTGGGTTTTCAGCTCTCCCAACAGCAGTTTCATGGTGGCATATTGCTTTTCTGTTACTTCCAAACATCGGATTGAGCCTTCTTGCGGTAGGTTTGCACATAGCCTATTGTGGTGTTTTTGCAACGAATCTCGACCTTTGACAATACGGCTGTATACAGAAAGTTGGAGCATTTGGTATCCATCTTTTAATAGAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCTGTGGTGACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGATATTCTTTCAATGGCAAGATTTCAGGCAGTTTCAGCTGTTTGGCGTTTTTGTCGGTTACGCTGGCTTGAAATGAAGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //