Array 1 340549-341918 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIR01000005.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_59 contig0004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 340549 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 340610 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 340671 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 340732 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 340793 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 340854 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 340915 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 340976 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 341037 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 341098 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 341159 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 341220 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 341281 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 341342 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 341403 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 341464 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 341525 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 341586 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 341647 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 341708 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 341769 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 341830 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 341891 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 358542-361073 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIR01000005.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_59 contig0004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 358542 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 358603 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 358664 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 358725 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 358786 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 358847 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 358908 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 358969 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 359030 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 359091 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 359152 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 359213 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 359274 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 359335 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 359396 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 359457 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 359518 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 359579 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 359640 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 359701 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 359762 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 359823 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 359884 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 359945 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 360006 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 360067 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 360128 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 360189 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 360250 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 360311 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 360372 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 360433 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 360494 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 360555 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 360616 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 360677 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 360738 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 360799 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 360860 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 360921 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 360983 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 361044 29 96.6 0 ............T................ | A [361071] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //