Array 1 1282560-1282051 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOGI010000001.1 Neobittarella massiliensis strain NSJ-65 Rx-D5-7_ctg001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 1282559 33 100.0 34 ................................. AAGGTTGAAAAGATGATGCCCGGGGAGAACGCAG 1282492 33 100.0 39 ................................. ATAAAGGGGGTGAATGTATGGAGCAATCACCAGCAAGTG 1282420 33 100.0 36 ................................. GATTGTAGGCCTATACCCGCCGGTAGCTCCGCAGCC 1282351 33 100.0 34 ................................. AAAAGCCCCGTTGCGCTCCTCCGTGACTGTACAT 1282284 33 100.0 33 ................................. CTCCACATTGCCGTCGATGGACACGGAAAAGCT 1282218 33 100.0 34 ................................. TGCCACAGGCGCTGCGAAAAATTGGCGCCCGACC 1282151 33 100.0 34 ................................. TCATATAAGTGGTATCAAATACCACTATAAACTA 1282084 33 93.9 0 ..........A..................T... | T [1282056] ========== ====== ====== ====== ================================= ======================================= ================== 8 33 99.2 35 GTCACCACCCGTGTGGGTGGTGTGGATTGAAAT # Left flank : TGAAACCCTGTTTTTGGTAGATACCGATCAAAAAGTACACCAAAACTGCTTATCATCCCCCTAAAATAATGAGTCTCTACCATTGATCTGAGCGCTCTCAGGTATTTAGAGAACGATTTCAGGGAGTAAACCAAAAGCTCCGGCTGTCATTGAGAAAAGAGGTGGGCCCATGTCAACGACTAAAGAGCTATCTAAAATGCTTAGCGAGTACAGGAGCGCCCACGATTTAAGTCAGGTAGAGGTGGCAAAATTATGCGGCATATCTGTAGAGTAGTATCAGAGGATAGAAATACCCAGTAAAATCTAAAGTGGAATAGTCTCTGATTGCTGTTTTGCTGGTGCGAAGTATAAGCACACAGAGAATACCTGTTATGTTCGCACCGGTGTTTTACCTGTTTTGCCGCGCAGATCTACTGCATGGGTAATGGATATGTTGACAACATACAGCGATATAGCTACAATAAATATAAGCAGTCGGCTATCTTTTGGCAGTGATTGCT # Right flank : ATGTGTGTTATATCCACGCTTTTCAAGAGGTCTTGTCAAAGTGATGTTGCTCTGACTGGTTTTGAGCGTATAGAGATCGCTTTGGTAAGCTGTTTTTAAAGTGGGGCTTGTCTGTGTATTCATCATTGCTCGGGGCCAGATCCTCTACATTTCACTGGGAATAACCGCATAGGCGATGGCCTATGCGGCCTTTTGCTTTTATCGGGACTTTTTCACCTGCTATAAAAGAGCGGTCTGCGGTCAGACTGCTCTTTTTTGTGGCGCTCGATACGGCGGGATGTTCGCGGTGGGCGGTGGGAAGGTGAGGCAGGTGAGACGGGTGTGCACAAAATGTAGAGGAGATGGACGGGGGTGGGCGGCATGCTGCCGGCTGGTGGGTCGACCGGGCGTACGGGGGATGAGATATGGGAATGATCGGCTTTGCCCACTATATGAGTTGAGCCCGGGAGTTGGGGGTGGTGGAGGAGCGGCAAAAACCCGAAAAGTATGCTTTACAGCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCACCCGTGTGGGTGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 2 1372160-1372531 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOGI010000001.1 Neobittarella massiliensis strain NSJ-65 Rx-D5-7_ctg001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1372160 33 100.0 34 ................................. CACATTATCCCTGTATCATGTCGAAAATATACAG 1372227 33 97.0 36 ......................C.......... AGCATTACCTCCAACAACCAGGTCGTCAAGATCACC 1372296 33 97.0 34 ........T........................ GTATAGCATGGCCCGCGTTATAAAATCGACTTTA 1372363 33 93.9 35 ............AT................... AAAAGTTGGCTGAAACAAATTATCAGAGGGCTTGA 1372431 33 87.9 35 ...........TGT...G............... ACCCAGTAGTCATTGCCCGATTTGTACTGGTGCCC 1372499 33 84.8 0 ............A..........A.C.....GC | ========== ====== ====== ====== ================================= ==================================== ================== 6 33 93.4 35 GTCACCACCCACCCGGGTGGTGTGGATTGAAAT # Left flank : CAAGTGCCAAAATGGCTTGCAAAATAGCATTCGCACTGTCGAATAGTCCCTGCAGCACGCATATTTCGTGATAAAGCTCATCAATCGCATTTTTCAAACGGTCAAATTCTTGTAGAGCGGGCTGTTTTTCAAACCTCATATTTTGAGTCCGAAATATCATTAGAGCGTTACAAAAGATTGAGTTGGGCAAGTCAAATCCAGTCCTGATAATAGCTGTGCGCATAACCGCATAGCCCGGTACTTGGATATGGATCTGAATGCTCTCAGGTATTCAGAGGACGAGCCTGGCGAGTAAGGTGCAATAGCCCTCAACCTAAGTGATGGCTACTATTCTGCTGGTGCGAAGTATAAGCACGCAGAGAATACCTGCTATGTTTGCACCGGTATTCTATCTTTTTTGGCGTGAAGATCTGCTGTATGAGCAATGGATATGTTGACACCAGACAGCAATATCGCTACTATAAATATAAGTAGTCTCCTATCTTTTGGCAATGATTGCC # Right flank : CATACTCCCGTCAAAGCCTTTCGGCAGCCGCCCCCGTCAACGTTTAACATGAACAGCGCATAAATGCGCCGCCGACAAGTACACCTGTCCCTGCTGGTATGCCAGACAAGAGGTCAAAAGCATTTGCTACCTTCGCCCTTACATAGTCTGGTTTCCCTTATATCTGCCTATATCTTTTTATATCGCCACAGGAATTTGGGGTACTATATAGGCACAATGTTGTTATGCGTGTCCTAATCGGCGGGAAAAGCCTTTATTGGCGATCGTTTTCACCGTTCAAGGCTTTTCAATGGCAAAATTTCTAATACTATTTTTTAGCCTTGATTATCATGGTCCCACAGTTTTCATAAAGTACCTTTATGTCATTGAATCCGGCATTTCCCATCAGTTCTATTTGATGTTCGAGCGTCAACGGGATATCGATATGTATAAAAACATCATCAGGTATGTTGTTTACTCTGCGTTTATACGCACACTGTTCAAGGCAAAGCGTTTCTTCT # Questionable array : NO Score: 3.84 # Score Detail : 1:0, 2:0, 3:3, 4:0.67, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCACCCACCCGGGTGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 3 1378919-1378682 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOGI010000001.1 Neobittarella massiliensis strain NSJ-65 Rx-D5-7_ctg001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 1378918 34 100.0 36 .................................. ACGCTTTAGACAAAGCCCTGATCTGTGACGGCCCCG 1378848 34 100.0 33 .................................. TTGAGCAACTGGGCGATGAACTCAGCAGCACGC 1378781 34 100.0 33 .................................. GGGAGAACTCCGAGAAGATGCTGTACACCTCGT 1378714 33 76.5 0 ............AT.........A.G.A-...CC | ========== ====== ====== ====== ================================== ==================================== ================== 4 34 94.1 34 GTCACCACCCACCCGGGTGGTGTGGATTGAAATT # Left flank : GGCGATATTCGGCTTCAATCCCTAAAAGCACATTCATCACTTGATCAGTCTTAGCTGAGTCGCCAATAATCTCTTGCAACTTCATCCATAATTTCTCTTTGTCCAACAATTATAAAGCATCCCTTTCTGCGACTAAATGAAAAATATGTGGATTATTGCTTTATATATTAGCAGGATATTTTTAGATTACAACATAATTGTAATAAAATCTACGCTTTTATAAAATGAATGATAACTCTAATCGTGTTGTAAATTGAGTGTGTTTATGCGTGTTGAGTTTGATATTGAAACACAAAATGACCTTGATATTTAAGCAATAAAAAGCTGTTGTTTTGCTGGTGCGAAGTATAAGCACACAGAGAATACCCATTATGTTCGCACCTGTGTTTTATCTCTTTTGTCGAGAAGATCTGCTGTATGAGCAATGGGCATGTTGACATCAGACAGCAATATAGCTACAATAAATACAAGCAATCTCCTATCTTTTGGTAGTGATTGCA # Right flank : GGAAATTAAGAATAACCCTGGCTATATTTAGTCAGGGTTATTCTTATACTTGTCATGCGGGCTTAACATCTGAAAATCAATAATGTTAGAGAGGATTATCCATGCACAAAGTGATCGTGCTCGCTGTCGTCCGCTATGATACTGAGGGTAACATGGCCTCGATAAAATAACCCACTTTGTAACCCACTTTACTGCCAAAATAGCGATTTTAGATAGCTAAACAGGAAAACAGAAAATGTTAATATTTCGCGTAGATAAGCCGTTTTTTTAAGTTTCTGCGTAAGTGGAAAACTAGGTGTTTTGAGTTCAAGTCCGGTCAGCGGCACCAACAAGGACCGCATGGATAAGCCATCCATGTGATTCTTGTTAAAGAGGTCTAGATATGGGTGGAGTGGGCCAGGTGGCAAAATTGGCGGACTTTGCTGATATCTTTGTACAGAAGTTTGCCGCTCGCATTTTTTACACTGGTCTTGGTGAGCGAGTCGACGCCGAAGGGGTGT # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCACCCACCCGGGTGGTGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : NA // Array 4 1726939-1726366 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOGI010000001.1 Neobittarella massiliensis strain NSJ-65 Rx-D5-7_ctg001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1726938 33 100.0 33 ................................. CACAATTTCAGGGTCAATACCTCGAACTTGGGT 1726872 33 100.0 35 ................................. GCTGCCGCCTTTGCCGAGGGCGGCGGCACGGCCTA 1726804 33 100.0 34 ................................. CCTACCGGCCGGGACAGCTTTGATGATTTTGCTT 1726737 33 100.0 37 ................................. AGTACCTTGCGTTTTTTTAGCTCCCATCCGTCCGCTA 1726667 33 100.0 35 ................................. TTGTCAAACTTGCCCATCCTGCGCTTTATGGCCAT 1726599 33 100.0 33 ................................. GCATATAAGACAAACTGTCTTACCATATTTTAG 1726533 33 97.0 35 ............A.................... GATCAGTTGGCGCGTACAATCTCGTAAAGAGATCA 1726465 33 100.0 35 ................................. GATCACCTTAAAGCCCTACAACCGGGCGGGGCTGG 1726397 32 87.9 0 .........T..A..............-....G | ========== ====== ====== ====== ================================= ===================================== ================== 9 33 98.3 35 GTCACCACCCACGCGGGTGGTGTGGATTGAAAT # Left flank : GCCGCAGTATACTGAGGTAAAAATACGGACAAGTGTTAGGGGGTAAAGATATGCGCGCATTAGAAAGACTGCCCAATATTGGGCCGGAGGTGGCGCGGCAGCTGGAGCAGGTGGGGGTGACTGAGGCGGAGCAGCTGCGACAGCTGGGTAGCAGGGAGGCTTGGCTGCGGATACAGGCGATAGACCCATCGTCCTGTATCCACCGCCTGTATGGGCTGGAGGGAGCGGTGCGCGGAGTGAAAAAAAGCATGCTGCCACCGGAAGTAAAAGCAGAGCTGAAAGATTTTTACAGTGCACACAAGCTGTGAGCGCACAGCAGTGCACCGGAGTGCGAAGTACAAGCGCCCAGGGAATACCCGTGTCTTTCGCACCGGGTACTGGAGAGGGTTATTCGCCTATTTAAGAAATGGCCGGACTTGATACGGGGGGTACTGGCATACAAGCTAGATAAGGTGTATGATAAAGACAAGTGTTAGGGCCTGTTTTTGTAAGAGATTGCC # Right flank : CATATTGTAGACACAAATTAGATTTGAACTGGCTGTTGACCGTAGATAGAGAGGACGCATAGGTGAGTCCACTCAAAAGGGACACGATAAAAACTGATTGGCGCCCCAGTTGTTGGCGGGTAAAGATGCGATGATCGCTTTACTCTAACCTGGGTCATACTTTTAATGCGTGCAAAACAGGAAGCTGGACAGCTACTAAATGGAAGGGGGGACATGGTGAAGATACCATTTAGCAAAGAGCAATTGGCGTTTTTGAAAAGTGTACCGCTGCCGTTTGACCCATCGACTGACTTGACGGATGAGCAGATAGAGAGATTGGTCGATGCTTTACGAAACCATTTTTCGTATTATGGGATGAACGAGGCCGGTACGGGAGAAAGTGAGATCGGCACTTGTTGTGCTGATCTGCTCACATTTTTAGCACCATATGCATAATGAAATGACAAGTCAATAGCAAATATGGTCTCTACAGTAAAGATAGGGGCCTTTTTGCTGTACAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCACCCACGCGGGTGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //