Array 1 25205-23177 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCAF01000027.1 Neisseria meningitidis strain Nm292 Nm292_scaffold_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 25204 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 25138 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 25072 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 25006 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 24940 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 24874 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 24796 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 24730 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 24664 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 24598 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 24532 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 24466 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 24400 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 24334 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 24268 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 24202 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 24136 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 24070 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 24004 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 23938 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 23872 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 23806 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 23740 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 23674 36 100.0 30 .................................... ATAAATTTGTGTCTGCGTTATTCATTTTAG 23608 36 100.0 30 .................................... ATAAAAAATCGAAAAAATCAAAAATACTAG 23542 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 23476 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 23410 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 23344 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 23278 36 100.0 30 .................................... TGGATAGGCGTTCCGCAGCATCAGCAAGCC 23212 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 31 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //