Array 1 46-197 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLTB010000038.1 Proteus mirabilis strain 2021EL-00154 NODE_38_length_33189_cov_63.016424, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 46 29 100.0 33 ............................. AGGGTCTGGTACCAAAATGATCCGCAACTACGC 108 29 100.0 32 ............................. AGACTGCAGACGCGCACCGGTAGCAGTTTCTA 169 29 86.2 0 .......................A..TTA | ========== ====== ====== ====== ============================= ================================= ================== 3 29 95.4 33 GTGTTCCCCGTGTATACGGGGATGAACCG # Left flank : CGGGAATGAACCGTTGTATCGCTTTCACTTTGTCATTCTGGCTTAG # Right flank : ATCATCAAGTCTTCTCTCTTACTTGGTATTTATGCAGAGATGAATTTTTATATTTATTATCTGAATAATAATGCTATTATCCTAAGTGAATATTCACTATGTGTATATTTTTGTGCCTAATTAATTATAAAAATAGGTTTAACATCATAATCACTAAGGAAGAAAGAAGATGTCTTTAGCTATTCGATATCTTGCGTTATTACCACTTTTCGTTATTACTGCTTGCCAACAGCCTGTAAATTATAATCCACCAGCAACTCAAGTGGCTCAAGCTCAGCCTGCTATTGTCAATAATTCATGGATTGAAATTTCACGAAGCGCACTCGACTTTAATGTAAAAAAAGTCCAATCATTATTAGGTAAGCAATCCTCTCTTTGTGCAGTGTTAAAAGGAGATGCTTATGGGCATGATTTATCGTTAGTTGCCCCAATTATGATAGAAAATAATGTGCAATGTATTGGTGTAACAAATAACCAAGAATTAAAAGAAGTACGTGATT # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTGTATACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 37619-38440 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLTB010000020.1 Proteus mirabilis strain 2021EL-00154 NODE_20_length_47662_cov_46.364931, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37619 29 100.0 32 ............................. AAATAGAACGTATCGCAGCTGTTATTTCTGTT 37680 29 100.0 32 ............................. TTGATTACGTTTCTCTCAGCAAAACAGAAAAA 37741 29 100.0 32 ............................. CGTTAATGACTTTAGATGTTTATAACCGTTTA 37802 29 100.0 32 ............................. TTTTACAATGTTTTATTAAATGGTGTTCGACT 37863 29 100.0 32 ............................. GTGTAAACCGCATCTTGTTCAGGGATTTCTTT 37924 29 100.0 32 ............................. AATGCGCAGACGACCTTTTAAGGCTTGGTTAT 37985 29 100.0 32 ............................. GGGAACCGTTCCGCTTTGCCATCTTATTTGCA 38046 29 100.0 32 ............................. TATCGAATATTCACAGGTTGCATTGATTGCAG 38107 29 100.0 32 ............................. TATCGAATATTCACAGGTTGCATTGATTGCAG 38168 29 100.0 32 ............................. GTGAAATGATTGTTCGCAATGATATCCGAGGC 38229 29 100.0 32 ............................. CATCTTCAAAGACTTTCTGACTGTATGGCTGA 38290 29 100.0 32 ............................. CGAACGTGATGACCAAACACATGTACACACCA 38351 29 100.0 32 ............................. AATGGGCTGAGGACGAGGCAATGAACAATGAG 38412 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GTGTTCCCCGTATGCACGGGGATGAACCG # Left flank : TCCCAATGCAAAACCTGCGCTTGATTGTCCCGTGGTATTTCCTTATGCACCTAATGCCGTTTTAGTCGGTTTTCTGAGTAGTTTTGCAGCGGGTGTCATTGGCATGTTTATTCTTTATGCTTTAGATTGGACTGTGATTATACCCGGGGTGGTACCTCATTTCTTTGTGGGTGCAACTGCAGGCGTATTTGGTAACGCCACAGGGGGACGCCGAGGTGCTATTTTAGGTGCTTTTGCTCAAGGTTTATTGATTACTTTCTTACCCGTATTTTTATTACCTGTACTTGGTGATATTGGTATTGCCAATACCACATTTAGTGATGCAGACTTCGGTGTGATTGGTATTCTATTAGGGATTATTGTTCGTTAATACTACCGACGTTGATATTACTTATTAGTGGAATTTTAATAAATGCCCGACTTTTTAACCCGTCGGGCATTTTTTTGGTAGAAATAGTGTATTTAAATTTTCTTTATAGATTCAATCTATTATGATTAGA # Right flank : GATCATCTTGTGCATTTTTATTATGTACTGTTTTCTAAATATTCTAAGAGTTATGTTGTGATATTAAGTGGGCAATAAATTTTGAAAAGCCACTATAGTCAATTCATATATGTTGTAAAATAGCAACATATATGAAGTTTTGATAAAGTTTAATAAGAAGTAGATCTCTTTTTAAACATTATTTAGAGAAAAAAATAGCTATTAATTGTAATATCTTCCTGTGGTAAGAGAACGAGTTAAGCGAAATGGATAAAGATTATTATAGCTACTGGGGCAAGTTTAAATCAGAAAATAATCATGAATACTATCATTTGCTTCCATATCATAGTTTGGACGTGGCTGCTGTAGGTATGATATTGTTTCCAGAAAACTCAAAAATTATAAAAGATATTTCTACTTTTTTACAAATACACCCAAAAGAATTTTCTAAACTGTTTTTATTATTGCTTTCTCTTCACGATGTTGGCAAATTTTCTTCTTCATTTCAATATATTAATCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 47354-47626 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLTB010000020.1 Proteus mirabilis strain 2021EL-00154 NODE_20_length_47662_cov_46.364931, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 47354 29 100.0 28 ............................. CCACCTATCGCAGCGCCCCATGGACCAC ACG [47379] 47414 29 100.0 32 ............................. TTGTATCGCTTTCACTTTGTCATTCTGGCTTA 47475 29 96.6 33 ....................G........ AGGGTCTGGTACCAAAATGATCCGCAACTACGC 47537 29 100.0 32 ............................. TTGTATCGCTTTCACTTTGTCATTCTGGCTTA 47598 29 96.6 0 ....................G........ | ========== ====== ====== ====== ============================= ================================= ================== 5 29 98.6 32 GTGTTCCCCGTGTATACGGGAATGAACCG # Left flank : AAACACTCAATAAACTTATCCCTTTAATTGAAGAAGTTCTTTCTGCGGGAGAAATTACTCCACCTGAACCACCTATTGATGCTCAACCCCCTGCAATTCCTCAAGCTCACCCTTTTGGCGATGAAGGTCATAGAGAAAAATAGTAATGAGTATGATTGTTGTTGTAACTGAAGCTGTTCCTCCTCGATTAAGAGGGCGACTTGCTGTGTGGCTATTAGAAGTGAGAGCGGGTGTATATGTTGGTAATGTTTCAGCTCGAATAAGAGAAATGATTTGGCAACAAATTAATGAGTTTGCTGAAGATGGTAATGTCGTTATGGCATGGGGAACTAATACTGAGTCAGGTTTTGATTTTCAAACCTATGGTGAGAATCGACGAGAGCCTATTGATTTTGATGGCTTGAGATTAGTGTTATTTAAGCCATATAAAGAAGATGTATAATCTTCGGTAGAAATAAATATATTTTTTTATTTAATAAAATCAAGTGAATATAATTAGA # Right flank : AGGGTCTGGTACCAAAATGATCCGCAACTACGCGTG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATACGGGAATGAACCG # Alternate repeat : GTGTTCCCCGTGTATACGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTGTATACGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.40,-7.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //