Array 1 37-658 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEWI01000111.1 Anaerophaga thermohalophila DSM 12881 contig_111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 37 30 100.0 37 .............................. ATTCTTGGTCTTGATGATAAGAAATTTAAGCAAGGAC 104 30 100.0 37 .............................. ATTATCGGAATTGCGATTGAGGCAGCCGCCCATTTAA 171 30 100.0 36 .............................. TTGGAATTGCTGTCTGTGCTGTCATTGAAGCATACG 237 30 100.0 34 .............................. GGCTATTCTCATGGTAGAACTCTTAGATATATTC 301 30 100.0 35 .............................. CGTCCGAGTAGATATCACAGAAGTTGTATCGTTCC 366 30 100.0 35 .............................. TCGCTTTGCGTGGGTGGGTAGTTTACAATATTCTG 431 30 100.0 38 .............................. GTGTTAACAAAATGGGCGGATAAGATAAAACAGGCAGC 499 30 100.0 34 .............................. AAATAAATAGATAACTCTAATTTTCTTTTATTAT 563 30 100.0 36 .............................. ATGTTTGTTGTATAAGGGAATTTATTTTACCACCAT 629 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 100.0 36 CTTCCAATCGTACCATGGTGGAATTGAAAT # Left flank : TTATCTCTTTTGTTTCACAGGAGGAAACATATTCCCC # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCAATCGTACCATGGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 361-1559 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEWI01000097.1 Anaerophaga thermohalophila DSM 12881 contig_97, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 361 37 91.9 31 T...............................G...T GTAAAAGTGGGTAATATTAAAGACCCTCAGA CC,C [386,396] 432 37 100.0 36 ..................................... TCTGGGTAAGTCGCTGAGGTACTACATTGGCGTGAG 505 37 100.0 36 ..................................... GTTTATCCAACTCCAAAACGGTTTAGACGAGATGGG 578 37 100.0 37 ..................................... ACCAGGATTTTATGCAGTAGAGGAATGGTTGAAAAAA 652 37 100.0 33 ..................................... AAAGATGATTGCCGATTATATGGGCATTAAAGT 722 37 100.0 36 ..................................... AATGAATGAAGCTAATGAGCGAATGAATTATCATAA 795 37 100.0 34 ..................................... TTTTAACAAATAAGGGAAAATTCGGTCACTTCGT 866 37 100.0 37 ..................................... GGTTTATGAAAACCTACGATGTACATTTCAACGAGTG 940 37 100.0 35 ..................................... CCGGTTTCGGGCTCTAAGCGTAAAAAACACAGTCA 1012 37 100.0 34 ..................................... CTGCAAGCACAAAAGTAAAAAAACCATTTAATCT 1083 37 100.0 36 ..................................... AACGTTTGGGAAGACCGTCACCGTGCAGTCTTTGAT 1156 37 100.0 36 ..................................... AGCATGAAATAGAAATGAAAATAATATATCTGCGTT 1229 37 100.0 37 ..................................... GTAAAAATATGGATTTTGTAATCAAGTTTTACCAGGC 1303 37 100.0 36 ..................................... AACTCAAAAAACTACTACTATGAAAAATATTAAAAA 1376 37 100.0 36 ..................................... TCCAAAATCATGATTAATTTATTCATTTTAGCATTG 1449 37 100.0 37 ..................................... TGTTTCACTTTTTACTGGTTTGTCAAAGAAAGAGATT 1523 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 17 37 99.5 36 GTCTTAATCCTTGTTTTAGTGGAATATTCTCTCAGAG # Left flank : GATGACAAGTTGGGTTATGTTCAGACCGGATTCCTGGTATTCCTGGAATAGCTTCTTGAATGTTGATAAGGTCATCCTCATTTTTTGCCATCAAAGTAAGGCTGTTAGCACGGAGATTGCAATATGTGCGAGGCCGAAGGCTTTCGACACAACGGCAAAAGCATCATTTTCTTTCATTAAAGTACTGCCGTATGTATTTAACACAAGTTCCATGAGTGCAGTATTCAATTTTTTGCCAAAATATATCCCATCACTGCAATGGATTTGCAAAAAGGAAAGAATTCCTTCAGCCAACTCCACGTTACGGGTAGAAGCAAACATCAAAATTCTTTAGAGTGACTATAATCAAAATCAAATCACT # Right flank : T # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTGTTTTAGTGGAATATTCTCTCAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 1934-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEWI01000079.1 Anaerophaga thermohalophila DSM 12881 contig_79, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1933 30 100.0 36 .............................. CATAATGATGGTGAAAATGAAGGTGATTTTGAGTCA 1867 30 100.0 34 .............................. TCTTTTTACCTTATTCACGAAGAGGAACTAAAAA 1803 30 100.0 37 .............................. GGTGGAATGATCCTGATTCTGTCAACTGGGAATATCG 1736 30 100.0 35 .............................. TATTCACACCTATACAAGAATGTTAATTGATTTAG 1671 30 100.0 39 .............................. CATTGTAATTCAAAGCATACGAGGTTTTGGTCTGATGAT 1602 30 100.0 36 .............................. TGTTTTTATTTCTTTTTTCATAGTCGTAAAGTTTAA 1536 30 100.0 34 .............................. TCTTTTAAGAAAGTTGGGAAAGTTTTTCTGATTA 1472 30 100.0 35 .............................. ACCCCTTATTTATACTCATTATAAATTAGGGGTTG 1407 30 100.0 35 .............................. TTTATAATGGTGTAGTTTGTATAGATATTATCTAT 1342 30 100.0 37 .............................. GTGCTGGTTGTGGTTATTTTTATTTTGTTTACGTATA 1275 30 96.7 34 ..C........................... ATTTGATAGCCGTTTAAACGTGTCGAATTCGACG 1211 30 100.0 35 .............................. CTGTTTTAATTACTTGTCTAAAATATTAGTAATAA 1146 30 100.0 37 .............................. ACTTTAAAATCAACATAACCATTCCCTTCCTGGTAAA 1079 30 100.0 34 .............................. TCAATAAGCGACGTTCTTAACGTAGCTCTTTCTC 1015 30 100.0 35 .............................. TTATGTTATTCGATTTTTATTTCTCCCCCATTTTT 950 30 100.0 36 .............................. TATACCCTTAAAAGGTACCCTTATGGTACCCTTGAG 884 30 100.0 37 .............................. TCTGAATATCTTCAAACGCTTCTTGAAGTTCCTCCTC 817 30 100.0 33 .............................. CAAAAGATAAAATATTTGAGATTGGCAATAAAG 754 30 100.0 35 .............................. GGAACGATGGTTCTTGTCAAATTCAGATATTAAAG 689 30 100.0 36 .............................. GGATATTGTTCCTGGCGGCGTCAAAGAGCGTCTGAA 623 30 100.0 36 .............................. ACAACAGGTCAACGCTTGATTAAGTACGATCAGAAT 557 30 100.0 37 .............................. GATTTTATTTAACAGAATATCAAGCAGGTTATGATGT 490 30 100.0 35 .............................. CTGTCTTATATTGTGACAAGTCTACTAATACAAGA 425 30 100.0 36 .............................. TTCATAGTGTCGTTCAACTGCGTTGTCTCTATGAAA 359 30 100.0 34 .............................. TATTAATAAGACAGGTGTATATTAGTGTACTTTG 295 30 100.0 36 .............................. ACATCGGGAGCTAACATAACTCCTCCCATTGTTTCA 229 30 100.0 36 .............................. CATCTAATTTCAGGTTCTTCAATTGATTTAACATCA 163 30 100.0 35 .............................. AAAGACGTTCAGGTTCAGAAGCCAGAGGAAGTAGA 98 30 100.0 38 .............................. TGGTGCCGTCGGTTGCGTCGCGGGGCCTTTCGGGCTTT 30 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 30 30 99.9 36 CTTCCAATCGTACCATGGTGGAATTGAAAT # Left flank : GGCTGTTAGCACGGAGATTGCAATATGTGCGAGGCCGAAGGCTTACTTTTTATTTACGCTT # Right flank : T # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCAATCGTACCATGGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 20-1364 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEWI01000090.1 Anaerophaga thermohalophila DSM 12881 contig_90, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 20 30 100.0 36 .............................. ACTGCAACTCAATGCCTACGGCTGCAAGTTCACTAT 86 30 100.0 37 .............................. TGAAATAGTTGAAGTTGTTCAGCTATTCCAGCTCCGG 153 30 96.7 35 ...T.......................... GCATATAAACTTTTTTTAATTGTGCTGTCATTGAA 218 30 100.0 36 .............................. ACATTAAATAAAGTTGGTAATTTCATGACTAAAAAA 284 30 100.0 36 .............................. CAATGGTATGGCGTTTTGACCAGCCACGTGCTCGTG 350 30 100.0 34 .............................. GGAAATGGAACTGTGGTCCAGGGTATTGGACTTG 414 30 100.0 36 .............................. TCGTTGTTTTTCCATGCGACCAATACAGTATATCAT 480 30 100.0 37 .............................. GGTTGAAAAGACACGTTCACGGATGAAAGATGAACTG 547 30 100.0 35 .............................. ATCTAACCTACACGGTTGGACTGCCTGTATTTAGT 612 30 100.0 34 .............................. TATTTAAAATAATAATTTTTAAATTTCGGATGAA 676 30 100.0 34 .............................. CGGGGATGATGGATCTTATCGTTTCCAGGGATTC 740 30 100.0 37 .............................. AGCTGACGGGACAATAAAAAAAGTCAGCGTATTCAAG 807 30 100.0 35 .............................. ACGAAACCGGCGAAGAAGTTTATTCAGAAATTATT 872 30 100.0 38 .............................. ACCGATAACGGGCAATATCTTTAAAAAGAACGTTTAAA 940 30 100.0 36 .............................. ACGAAAGGTTTGTTATTTGCCTCGACCCACAAATGT 1006 30 100.0 37 .............................. AAAAACATTCTTATAGAAGCTGGTCTCACAACTGTCG 1073 30 100.0 36 .............................. AAGAAGCCGGTTGTTGCTACATTCCGTAAGGGTGCC 1139 30 100.0 35 .............................. CCTCAAATTGAGCGAACACCGGAAAGGCCATAAGG 1204 30 100.0 34 .............................. ATTAGTTTCATACTTCTGGAAATATCAGCCACCT 1268 30 100.0 37 .............................. ACATCAACAGCGAATGCCAAAGTTAAGACATCATAAT 1335 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 21 30 99.8 36 CTTCCAATCGTACCATGGTGGAATTGAAAT # Left flank : GAATTTATTTTACCACCATC # Right flank : ATTTATGAAGTAGCAAAGTAAGCCTTCGGCCTCGCACATATTGCAATCTCCGTGCTAACAGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCAATCGTACCATGGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 1 57-2449 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEWI01000073.1 Anaerophaga thermohalophila DSM 12881 contig_73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 57 30 100.0 37 .............................. AGTTTTTTGTAACGTTCTTCAGGTAGCAGCTGAGCTA 124 30 100.0 35 .............................. GATAGACGCTGAAGTTTTAGACGTCACAGAAGGCG 189 30 100.0 36 .............................. AGACAACGACTGCGAGTAATTTGGGCAGTGTCACCG 255 30 100.0 36 .............................. CTAACAAAAGAATATATCAATAAAAAATGGCTCGAT 321 30 100.0 35 .............................. ATGTCCGTTTTGTTGAAGCAATTCAGCTCTTAGAA 386 30 100.0 37 .............................. GATGGCACCGGCACACGGCCGCTCGATGGCACTTGGG 453 30 100.0 34 .............................. TTTCTGAAGGACAATTTCTATATCCTGTCCTGAA 517 30 100.0 34 .............................. ATCACAGGGATGACAGTTAAACAGTCAGAAGAGG 581 30 100.0 34 .............................. ATCGAAAATTGGGATGGATTCCGAATTATCGATG 645 30 100.0 37 .............................. GTCAATTCAAAGACGTCTTCGGAGCAATTTCGGGAAT 712 30 100.0 36 .............................. AAATTAAGTGTCAACGAAAAAACAACTTGTTGGTCA 778 30 100.0 34 .............................. CAAGGCACAGGGCAAATCAAGCACTTTAAATGGC 842 30 100.0 34 .............................. CTCGGCTGACATTTACGGAACGCTTGAACTTCGT 906 30 100.0 36 .............................. TCGTTGACGGAAATCTTTTTTTCTTTTCCGCCAAGT 972 30 100.0 37 .............................. GCGGAATATTTTGAGTTTATTTGTGCTCTTTTCATGG 1039 30 100.0 35 .............................. GATAATTGAGCATCGAAACGTCGATTATCAAATTT 1104 30 100.0 37 .............................. TTAAATTATTTGCATTCAATCCCGAGGAGCTTATTTC 1171 30 100.0 35 .............................. CCGAGGAGGAAATGGAATCAGCGTTTGAAGATATT 1236 30 100.0 37 .............................. GGCATACATATATAAATGCATTTAATGATTTAGTTGA 1303 30 100.0 35 .............................. CAATTTAGGATATGAACCGACTTATGTTGTACTTT 1368 30 100.0 35 .............................. ACTTCGATGTTGGTCTTCTGTTTAGTACGGTATAA 1433 30 100.0 35 .............................. TCCGAAGTATATTTTTAGCTGCTAATAAATCTCTA 1498 30 100.0 38 .............................. TCAATACTAATACTCCAACGACAACAACGAGGTAATAT 1566 30 100.0 34 .............................. AACCATTACCAGACCTGGTTTGAATTCAAGATGT 1630 30 100.0 36 .............................. ATATTTGAAGGGAGTAATGATGACGGTAGAGAAGGT 1696 30 100.0 35 .............................. TCTTGTGTAGTAATACTCACATTATCATACGAAGC 1761 30 100.0 36 .............................. GATGATGAAGGAATTATGCTTGGTGCCGGTTATGTC 1827 30 100.0 34 .............................. GTAATTCTTCAATTTCAGAATAATCTGGAATATA 1891 30 100.0 37 .............................. TACTTCAACTCGGGATTTTTGTTTTTCGGAATAACTA 1958 30 100.0 36 .............................. AACAATATCCTCAAAATTTATGGCAACGGGGATATA 2024 30 100.0 37 .............................. AGCTGTCATCGGATATTAAAAAGGGCGGCATTCCCTG 2091 30 100.0 35 .............................. AGTCATGGACGCCTTCAAAAGACCAGATAATTGAG 2156 30 100.0 36 .............................. TCAGTTATATGGTTTAAACCTTTGTCATCCTGATTT 2222 30 100.0 35 .............................. TGCTAAAATTACCCTTTCAGGCAATACAACAATAA 2287 30 100.0 36 .............................. AAACGCAGGGTTGGGCGTTCTTTTGCGAGGCGCTTT 2353 30 100.0 37 .............................. ATAATCAAGGGCTATCTTTTCGATCTTGCCCCTTAAA 2420 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 37 30 100.0 36 CTTCCAATCGTACCATGGTGGAATTGAAAT # Left flank : TTACCATGGTGGAATTGAAATCTCCCTGTCAGTTATATTCCCGAAATCCTGTCTGAC # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCAATCGTACCATGGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 39269-40090 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEWI01000034.1 Anaerophaga thermohalophila DSM 12881 contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 39269 37 100.0 34 ..................................... AAAATTTTCCTGGACTACTTCGTCTAATGTTTCT 39340 37 100.0 34 ..................................... CCAAATTTTCCATGGTTAAAAAAATTAATATGTT 39411 37 100.0 35 ..................................... TTCGTTAAAATCACTAATTTCTTTTTTTAATTTTT 39483 37 100.0 32 ..................................... TTATTCCGGGCTGCGTTGAACAACGTCTGAAT 39552 37 100.0 36 ..................................... TATCAGAATTTTTGCAGCATGTTGATTTATGGCAAA 39625 37 100.0 36 ..................................... ATTATCTCTTAAATTCATTGTCTTAAGACTTTAATT 39698 37 100.0 33 ..................................... GGAAGGGAACGGCCTTTATTTCTATTCAGCCGT 39768 37 100.0 35 ..................................... CGCATATATTCAAACAAACGGTTACACGACGTTCC 39840 37 100.0 34 ..................................... ATTCTTTTATTTCTTTTTCAGTATATTTATCAGA 39911 37 100.0 34 ..................................... TTTTATTATTTAAAATGAGACACTAAATAAAAAA 39982 37 100.0 35 ..................................... TCAGCGTATTAAGATGCAACGTAATGTAATTACGT 40054 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ==================================== ================== 12 37 99.8 34 GTCAGAGAAGGTATTCCATTAAAACAAGGATTAAGAC # Left flank : GGCACTCAATAGGGGCATTGAACCCTATGGGAGGAGGCTGACGCATAGTTTCGAAATCGTAATAAAGGGTACGTTTGCTGATGCCTTCTTCATCACCAAATTCACTACGGAGGGCTTCACTTACTCGTTCCTGTATTTCATCTATGGTACGCGTGTAGCCGTTTTGTAACAAGCTGTCGATAATTCTATACCTGAAAGCCGCTTTTTTGTTCAATCCCATAACGTTAACAAAGATAAATATTGTGTTTTTATTTTTCACAAAAATTTTTTAATTTGGCTTTGGTTGAAATTGTGTTTTCACCTGTTTTTTATACCACACTCATTAATGTAAAACGTTCTTTGAAATTTTAGCAAAAAACTGATAGAAATCATTGTTTTATGTTTAAAATAGTTTTAAAATTGCACCTTCAATTAGAAAGTTAATTTTGAGTTAAAATATTCAAAATAAAGTTAATTTCTATTTGTAAAATATTGATTCCGTTGAGTTTGAAAAAATAGCG # Right flank : AGTGATTTGATTTTGATTATAATCACTCTAAAGAATCTTGATGTTTTCTTCTACCCGAAAGTTGGAGTTGACGGAAGGAATTCTTTCCTTTTTTGCAAATCCATTGCATTGATGGAATATATTTTGGCAAAAAATTAAATACTGCACTCATAAAACTTGTGTTAAATACATACGGCAGTACTTTAATGAAAGAAAAAGATGCTTTTGCCGTTGTGTCGAAAGAAGGAAAGCAAATCATCCTGCCTGATAAAGGTCTTGTCCCTGTACAGCTTCAACGCAGGAAGGGTTTCCGCTTCGTAGCGTTAAGAAAGGGGAATAAACCACACCATTTTTTTATTTCTCTTAAAAAATGCATATATTTCTGAAACATTATCTGTGAATGAAACGAGCATGGCAAAGATTGCCACAACAAGAATATGTAACACTTAATCTCAACCTAACCTAATCCGATGAGATTCTTCGTCGTGCCTCCTCAGAATGACAAGTGGCCTTCTGTCATT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAGAAGGTATTCCATTAAAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 50117-49718 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEWI01000034.1 Anaerophaga thermohalophila DSM 12881 contig_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 50116 37 100.0 34 ..................................... TAAAATTAAAGTCATGGAAAATTTAAAAACTTTC 50045 37 100.0 37 ..................................... TGAATCGCCACAACGAGTATACGAATCTACTATCAGT 49971 37 100.0 38 ..................................... CATATGAGACGGTCATTAATGGTATTAAACGTCAATCT 49896 37 100.0 34 ..................................... GATCAAATTATACTGCTTAAACCATCCAGGTATC 49825 37 100.0 34 ..................................... AGTCTGATGATGTCAGGGACGAGGACCTTGACAA 49754 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 100.0 36 GTCTTAATCCTTGTTTTAGTGGAATATTCTCTCAGAG # Left flank : | # Right flank : AGCTATTTAATCAAACTCAAGATAATCAAACATTTACAATCTAAAATTAACTTTATTTTAGATATTTTAAACTAAAATTAACTTTTTGTTTTGGAGTGCAAATATAAAAATATTTGACACAAAAAACAATGATTTTTATCAGAATTTCAAAATATCAAAGAACGTAAAAAGTTATTCAAATTTAAAGATTTTCAATGAGCTGTCAAATTTCTTAAACAGGCGTTACTCTCCATTGTCATCAGCTTTCAGCTTTTCGGGTTGTACAGACACCGGAAAAACTACTTTCTTCTTTGTTTCGGAAACAAATTTTGAGCATATTGTAGTATAACAAAGATCGTCCATACATTACATAAGTCCAACCTAAAAAGCATCTTTGTTGCCAAACTCACACATAATTAAAAAACGCCCGCTGCTATTTCACAATTAATCTATCTCCGGATACCTGCGAAATCTCACAAACCGGAAACGGGTAGTTTTTTCGCCGTTGCTCTCATAGGTCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTGTTTTAGTGGAATATTCTCTCAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 698-16 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEWI01000004.1 Anaerophaga thermohalophila DSM 12881 contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 697 30 100.0 38 .............................. CTCAGTACAGGGCTATGCAACCGAAACCTGGGTTGATG 629 30 100.0 34 .............................. CTTGAACAAGTGTATCAGGAAACAGCAAGGCTTA 565 30 100.0 36 .............................. TTTAACGGAACTGTGGGATACTAATCCGGCATCGCC 499 30 100.0 34 .............................. TGTCAATTTTTCTATTAATCGCTGCTGCCTGTTC 435 30 100.0 36 .............................. GAAATCTGAGTGAAGTCATTGCCGACAGCGCAGAAC 369 30 100.0 34 .............................. AGTTTCTTCATTTGATTTTGTCTTTTAAAGACGA 305 30 100.0 37 .............................. GGGAAATGTAAAATGTGTATCCTGAAAACGTAATTGT 238 30 100.0 34 .............................. TTCGACATGAGAGGAGCCAGAGCTTTTGAATTAA 174 30 100.0 35 .............................. GTGCCGTAAAAATCCGGCCCTTCAGATGGCGGAAT 109 30 100.0 34 .............................. CAAGGAAGTTGCCCCGTCGCTTATCATTAACTGA 45 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 100.0 35 CTTCCAATCGTACCATGGTGGAATTGAAAT # Left flank : ATTATTAAAGATGTATGTAATTCTTGTTTACGATGTCAACGAAAAACGGACCAGCAAAATGCTAAAGTTGTGTCGCAAATATCTGAATTGGATTCAAAACTCAGTTTTTGAAGGAGAAATTTCTGAAGTAAAATTAAAGGAACTTATAAACAAAGCTTCTTCAATTATGGACAACGAAACCGATAGTTTGATTATCTTTAAAACAAGAAATGAGAAGTGGCTCGAAAAAGAAATTATAGGAAACGAACGTTCTGAAACAGATAACTTTTTGTAATTGTTGGTCGTCGGTCTGACTTTTTTAGCTAATAAAAAAAATTTCTTCATCGCCACACTTTTCAAAAAAGCTCTTTGACATACTGGAAATTAATAAGTTAATAACAATTGTCGAAGGACGGGCTAAAACGCCTTATTATACATCGACAACATTTAAACCCAAAATTCCGAGGATTTATTTCCTAAAACCCTTATTTTTGGGTAACTTTTTTAAGTTGATTCAACGG # Right flank : TCTCCCTGTCAGTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCAATCGTACCATGGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 570-19 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEWI01000186.1 Anaerophaga thermohalophila DSM 12881 contig_186, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 569 30 100.0 36 .............................. GATTTGCTATTTCCTCTATTTTAGTAATCAGCGCAA 503 30 100.0 35 .............................. GTGGTTTTGAAGCTGGTTTTGATTTGGGATTTGTC 438 30 100.0 34 .............................. TGATTATTGGGATGTATTGGTTAACGGGGCTAAG 374 30 100.0 36 .............................. ACGATTATCATCCCATGAATCTGGATATATTGTCTT 308 30 100.0 36 .............................. TCAAGTGGATAACTATACGCAAGAAAACGCCGGTTA 242 30 100.0 34 .............................. ACGTACCCCCGGGTCGATTGGAAAGCGTAACGGA 178 30 100.0 34 .............................. ATATTAGTCCGTTATCTGTATAATGGACTAAATG 114 30 100.0 36 .............................. AATAATAATACTCAACATAATTTTAAATTTTACGTT 48 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 100.0 35 CTTCCAATCGTACCATGGTGGAATTGAAAT # Left flank : TTCGATCTTGCCCCTTAA # Right flank : TAGGGTTACATTGTTTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCAATCGTACCATGGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [21.7-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 536-46 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEWI01000183.1 Anaerophaga thermohalophila DSM 12881 contig_183, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 535 30 100.0 36 .............................. TTCGGTAATATTTGAGAAAGCAATGACAGAACTTGG 469 30 100.0 34 .............................. AATCTATGAGCGTCGTTCCATTCAAGGAAATTAG 405 30 100.0 36 .............................. GGTGGACGTCTTAATAGAAATAAAGGCCGTCCCCTT 339 30 100.0 35 .............................. CGGGGTGAAGACGCTCGCGGACTTATTTGTTTAAT 274 30 100.0 35 .............................. TGAGCGTCCAGAAATACAGCATGAATGCAATAACA 209 30 100.0 36 .............................. CTTAGTGAAAGCTTCACAATTGAGAAAACTCTTTGG 143 30 100.0 38 .............................. CAAAGAAAAATAGCATTAATGCTATAAATATCGTTTCC 75 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 100.0 36 CTTCCAATCGTACCATGGTGGAATTGAAAT # Left flank : TTCGATCTTGCCCCTTAA # Right flank : TATGATCAAGGGCTATCTTTTCGATCTTGCCCCTTAAACTTCCAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCAATCGTACCATGGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 435-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEWI01000177.1 Anaerophaga thermohalophila DSM 12881 contig_177, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 434 37 100.0 36 ..................................... AACGTTTGGGAAGACCGTCACCGTGCAGTCTTTGAT 361 37 100.0 36 ..................................... AGCATGAAATAGAAATGAAAATAATATATCTGCGTT 288 37 100.0 35 ..................................... GTAAAATATGGATTTGTAATCAAGTTTTACCAGGC 216 37 100.0 35 ..................................... AACTCAAAAACTACTACTATGAAAAATATTAAAAA 144 37 100.0 33 ..................................... TCCAAAATCATGATAATTATTCATTTAGCATTG 74 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 100.0 35 GTCTTAATCCTTGTTTTAGTGGAATATTCTCTCAGAG # Left flank : CTCAGAGCTGCAAGCACAAAGTAAAAAACCATTAATC # Right flank : GTGTTTCACTTTTTACTGGTTTGTCAAAGAAAGAGATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTGTTTTAGTGGAATATTCTCTCAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 19-243 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEWI01000120.1 Anaerophaga thermohalophila DSM 12881 contig_120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 19 31 100.0 34 ............................... CTTATAGACAACGTTAAAAATGAGTCGGGTTGTC 84 31 100.0 33 ............................... CTTGTTAGTCGTACTGGTTACATTGGTAGGTTG 148 31 96.8 34 G.............................. CAACCGACAAACAAATACAGTATAACTAACTGGT 213 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ================================== ================== 4 31 99.2 34 TCTTCCAATCGTACCATGGTGGAATTGAAAT # Left flank : TTGCCTTCCTCGTACTGCT # Right flank : CAAATTATAATACTCAACATTTTTTTATTGTAAGCCTTCGGCCTCCTACGTATTGTAAAAGTAAAAAAATTTTCCC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTTCCAATCGTACCATGGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.90,-1.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //