Array 1 1606585-1602023 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXEE010000001.1 Bifidobacterium pseudocatenulatum strain YIT12988 YIT12988_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1606584 33 97.0 32 C................................ CGTTTCGCTTGTCACCCAACCTCCTTTCTCGT 1606519 33 97.0 33 T................................ CCATCGCAATCATGAATAGCCACGTGAGGCTAG 1606453 33 93.9 31 CA............................... GGTCAATAAGGCTAAGGGCACCGCGAAGCTC 1606389 33 97.0 33 .A............................... TGGCTCAGGCCGAGCGTTTCGGCGGTTTCCTTG 1606323 33 93.9 31 CC............................... TACGGGCACCCGCTCGAAGCGTGGCTGTTGG 1606259 33 93.9 31 TG............................... AAAATGTTTTTGAGGATGTCAGGCAGCTTGC 1606195 33 93.9 31 CG............................... GATTCGGACGTGCAGGCCGTTACGCCAGGCA 1606131 33 93.9 33 TG............................... TCCGGCTACGTGGATCCGGCGTGGGCGCCCGGC 1606065 33 93.9 32 AA............................... GACGTTCGAGGTCGGACTGCCGGTGCAGTCGG 1606000 33 93.9 33 CG............................... GAGCCGGTCTTGCCGAGATAACCGTCCTGCCGG 1605934 33 93.9 33 AC............................... ACGGCTCCAGGCAAGCCGTTGGACGAGCCCATG 1605868 33 93.9 33 AC............................... CGGTCAGATCAACGTCAGCAAGGCCGAAACCAA 1605802 33 93.9 31 CG............................... ACGACCACGACGGCCATGCATGTCACCCAAA 1605738 33 93.9 33 TG............................... GGGTGCTTGTGGAAATTCTTGCACCATGTTTTT 1605672 33 93.9 32 AA............................... TGGGAGCCATGGCTGGCCGCCAAAAAGACCAA 1605607 33 97.0 31 .G............................... CTTGATGTCGTCGCCGGACCTTTTGGAGCAT 1605543 33 100.0 33 ................................. CGTATGGTCGTGCTCGACCCACCACACTTGCGC 1605477 33 93.9 31 AA............................... GACCGTTCGGCGTCGGTCATCATGCCCGACT 1605413 33 93.9 32 TG............................... TCCCAAGGGTCGAAATAGACGCGGAGCGCTGA 1605348 33 97.0 32 T................................ AAAGCCACCGAAGAAAAGGAGCAATAATCATG 1605283 33 97.0 31 .G............................... CTTGGCGTCGGCGCGGGCGTGCAATACCTGC 1605219 33 93.9 32 TC............................... ATTCTTTCATACAGCGCCAATGCGCTGAAATG 1605154 33 97.0 31 .A............................... AGCAGCTTGGTGGCGAATCCGTAGACGACTT 1605090 33 93.9 32 TG............................... GTTGCACCATGATCGACGTCATGTGGAATTAC 1605025 33 97.0 32 .C............................... ATCAACTGGAAACCCTTATCCGCGAAACAGAA 1604960 33 93.9 31 AG............................... GATATCGAGATCACGTATGTTCTGAGTCGTT 1604896 33 93.9 33 CG............................... CTTCCTGTTCCTGGAAGCTGGTGGAGTACAGCC 1604830 33 97.0 32 .G............................... GTCGGCCAATCTGGCGGCCATCTCGTCGCCGA 1604765 33 97.0 32 .A............................... TGAACCATTTTGGGAAGTGATCATATGTCCAC 1604700 33 97.0 33 A................................ AACTACCGAGAAAAAGGAGCGACTGCTTGAATC 1604634 33 100.0 33 ................................. ACGAAATGTGTTTGCCATCCGTCTGATATTATG 1604568 33 100.0 32 ................................. TGCGCCATCACGGTAAGCCCGATACGATTGAC 1604503 33 97.0 33 C................................ GGAATGAAACAAAAAGTGCCATACATGCTATGG 1604437 33 97.0 33 C................................ CCCGAGCCCACTCCGGACATCGTGGACGAAAGC 1604371 33 100.0 34 ................................. ATTGTCGTAGCAGCCCCATAGTCCGTCCGGCAGT 1604304 33 97.0 33 A................................ ATGACCTGCAGCGCGCTCGGACTGGAACCGTCC 1604238 33 97.0 31 A................................ GGTCTTGGTGAGGTTGAAGTAGTATTGGCCG 1604174 33 100.0 33 ................................. GCAGTGGGGGCCTAACCGCTTCATCTACTACTT 1604108 33 100.0 33 ................................. ATGCAAGTACAGGTTGTCGCCTTGCCAGTGTAT 1604042 33 97.0 33 C................................ AGCAGTCGGAAAAGCCAATACGAATACCGCTAT 1603976 33 97.0 33 C................................ GATGATGTAGGTGCCTGAGGAGATGAACTGCGG 1603910 33 97.0 34 C................................ TGTCATAGCCCTATTACCTCCCGTTCGCAGTAGT 1603843 33 100.0 33 ................................. TAGCAGCATCACGTCTATATCGACGTAATCGCC 1603777 33 100.0 33 ................................. AATAAAATCATCATTCGGAAACGAATCACAATC 1603711 33 97.0 33 A................................ AAGGGAAAGGAAAAAATAAAATGATTAACAATA 1603645 33 100.0 32 ................................. CACCGCATCCCACCGCAGACTGGACTCCACCG 1603580 33 97.0 33 T................................ AATTTACCGTCCCACACGGACAATAAAGAATAT 1603514 33 100.0 34 ................................. GCCTCAAGACCACTCGTATACGAGTCGGCGATTT 1603447 33 97.0 33 T................................ GCCCCCTCGCTGGCGCTCGCCCCCAACCGCGCG 1603381 33 97.0 32 C................................ TGCATGTCGCGGTCGAACGCGTCGAGTTCCGG 1603316 33 97.0 33 C................................ ATGGCCTGTTGGCCATCCAGCCGATCAGGGTGG 1603250 33 97.0 31 C................................ AAACTGCAAAACGGCATTATCATTGCGGACG 1603186 33 100.0 31 ................................. GCCGACGGTGTCGAAATCGCCTTCCTTTTCG 1603122 33 97.0 33 C................................ GTGGACCAGTCGGCCGGACGCACATTGGTGTCC 1603056 33 100.0 32 ................................. ACTTCGATGCACACGGGCTGGCCATGCCAGTA 1602991 33 97.0 34 C................................ GCATACGACTACGGCAAACTAGGCATATCGCCAG 1602924 33 100.0 33 ................................. CCAATTATGCCGTCGAGTGGAAGCTGCATAAGG 1602858 33 100.0 34 ................................. CCATCTTGTTCTTCGCGGCGGCCGAGAGGGTGGA 1602791 33 100.0 32 ................................. CCAAACAGGGTGGATACAATGGCACGGCGCAG 1602726 33 100.0 35 ................................. TGTTCGGCGTGCAGTGCACGCCCGACGAACTGTCG 1602658 33 100.0 34 ................................. TCCAAGATGAGGGCTGACGGCACTCTCTCCACAA 1602591 33 100.0 34 ................................. ATACCATCCTCGTTAAGGGTGGCGTGGTCGAACA 1602524 33 100.0 34 ................................. GTTTACGTCACGGTTAATCTTTCGGACAGTGGCA 1602457 33 100.0 34 ................................. ACGATAGCCATGGCGCTGCCCAGGATCATCGTCG 1602390 33 97.0 33 ....T............................ AAGGCCGCGTCCGTGCAGGTGCAGGCAGCTCAG 1602324 33 97.0 35 ....T............................ ACGTCGGACAATACCATCAAGCAACAGGCCAACGA 1602256 33 100.0 35 ................................. CGGACGATGCCGCTTGTGCTGCGCTTCCTTGGTCT 1602188 33 100.0 35 ................................. GAAGACGGGCCGTATGCCTCCGACTCCCGCAACAT 1602120 33 100.0 33 ................................. AGCTGGGAGCAGTGCGTTCGCGCCGTACAAGGG 1602054 32 97.0 0 ...........................-..... | ========== ====== ====== ====== ================================= =================================== ================== 70 33 97.2 33 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : GCCAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAACGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCA # Right flank : CGGTGTCTGCATCGTTCCGGCCGCCGCGTGGATGTTGCTCTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTTTGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCTCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCGAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGGC # Questionable array : NO Score: 8.54 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.42, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //