Array 1 560619-559593 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LT906456.1 Actinobacillus suis strain NCTC12996 chromosome 1, complete sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    560618	    36	  97.2	    30	..C.................................	TTTATATGCTTACATCACTTCATTCACTGC	
    560552	    36	 100.0	    30	....................................	TTGCTTTACGAAGGTATAAGCTCCGTCCTA	
    560486	    36	 100.0	    30	....................................	GACAGCATATCTGTTAAACCCGGTCAGAAT	
    560420	    36	 100.0	    30	....................................	CGCATACATTAGGCATTACCCTCAACCACT	
    560354	    36	 100.0	    30	....................................	AAATGGGGCGAGCCAAAGCGAGAGCGAAAG	
    560288	    36	 100.0	    30	....................................	AATCAGGGCACTTCTTGCTCAAACGGTGTA	
    560222	    36	 100.0	    30	....................................	GGGATAGATATTACATGGCTCATAAATTCC	
    560156	    36	 100.0	    30	....................................	TCAATATTGCTGCCATTTTTCGCATTTTTT	
    560090	    36	 100.0	    30	....................................	GAAGGCTTTAACTATGATGCGGTAAACGAA	
    560024	    36	 100.0	    30	....................................	AAGTGTTGGCCACTCAAATATCCAACAGCG	
    559958	    36	 100.0	    30	....................................	TCCAAAAATGAATAAATTCTCTCACGTTTT	
    559892	    36	 100.0	    30	....................................	TTACCGATGATTGGCAATTTATCGGTTATA	
    559826	    36	 100.0	    30	....................................	GAGGATGCGGATCGCGATATTAATGCTGTC	
    559760	    36	 100.0	    30	....................................	GATCCAATAGCAGATAAGGCAAACATAGTG	
    559694	    36	 100.0	    30	....................................	TGAATCAATATTGATAACAACATTCTTAGG	
    559628	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        16	    36	  99.8	    30	GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT	                              	       

# Left flank :   ATTTACCTTGATTTGTGCAGCTTTATGCCACACCAGTTTTGCAAATTCTGCTGAAAATCCGACCGCTTATACGGAACACGCCAAATACAAAATCTCCGCTACCGATATGAAAATCTTGGTTCGTCAGTTAAATAATATTGAACAATGCCTTTTCCCCGATCTTGCAAAACCGAATTACCAACAAATCTATGACAATTGGTCTGTTGCCGAAAGCATGACGATGCTCTATTTCCAGCAAAATTTATTAAAAGAGTTAATTGGCGAACACAATGCTCAATTGATCGAAAAAGACGAATCCTCACGTCTTTACTTTGAGCAAATGCATGAAAAATATAACCACCAAAAAGCTAATGTTGATAAATCTCGCTGCGAAGAGTTCAAACCAATCTACGCTCAAATCAAACAGCAAATTGAATACTCAATACCACAGGTGTATAAATAAGCTTTCTTAGTTATTTCACATAGCTACAATTCGACTCTGGTACACGACTTCGTCAGGA
# Right flank :  CGGGACTCTAAAAAGCCTTGAGCAGTAAGGGTTCAAGGCTTTTTTATTATTAAAAAAATTGCCTTAAAACAGTAAAAGTTGGTTCGAATTCACCTTTTTTTCTTGCAATTTTTTCTCTCCAACTAGAATTTCCATATTGGCGAATTGTTTTTCAGTAATAGAAATGCAACGAATTGAACCCTCTTCAGGTAAATGTTCTACTAGTCTTTTATGATGTTTTTCCATTGAATCTCGCCCTCGAATAATTCGAGTATAAATAGAAAGTTGTAACATTTGGTAGCCATCTTTCAGCAAAAATTGCCGAAATTGATTTGCGGCTCGCATTTTGGCTTTGGTTGTTACAGGTAAATCAAATAATACAATCATACGCATAAACACATTCTCACTCATATTGATGCTCCGCAAGCGGTAGAATTTCAGGAAGTTTTAACAAATCTGCATTTCGTTGAGTTAATGCAGATTGAAATGAACTCACGCTTCGCTCAATACCGGTTAAGGTA

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         R [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.90,-0.40] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.41,4.5   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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