Array 1 61255-59382 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGIT01000003.1 Klebsiella sp. RIT-PI-d NODE_2_length_598449_cov_38.8215_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 61254 29 100.0 32 ............................. GGGGCAAGACCCGTGTCGGAGATCCAATTAGA 61193 29 100.0 32 ............................. GTGCGCTCTGCGTTCAGGGACTCTCTAGTCAT 61132 29 100.0 44 ............................. GGGCAGTCCATTATCTTTGGATGGGTCGACGAGCAATCGCCTAA 61059 29 100.0 32 ............................. TCAGCGCGACAGGTGGATTATTGAGTGCGCAC 60998 29 100.0 32 ............................. TTATGACAAAAGAGGAGCTTTTCAGTGTTGTG 60937 29 100.0 33 ............................. GAAACACAGGTTATGCGACGAAATGCCGTGAAC 60875 29 100.0 32 ............................. GGACTGCCATCAATCGTGGTCAAAGTGCCTCA 60814 29 100.0 33 ............................. CGCATCTTCTTTAGCCTCGAAAACAACCCGCCC 60752 29 100.0 32 ............................. AAAACGAACGTTAAAGTCGCCAGCAGTATAAG 60691 29 100.0 32 ............................. CAGATAAGGACTGCGTACAAGTTTCACGCGGT 60630 29 100.0 32 ............................. ATAACGGGTACGACTGGATATCGAATCTTAAT 60569 29 100.0 32 ............................. AACGAGTGGCAGGGCATTGATTACACCGATGC 60508 29 100.0 32 ............................. TTCAGGTTTCTGCGGAACGAACTCCGCACGAT 60447 29 100.0 32 ............................. CCTTACCGTGAAAACATAATACAACATTCCTA 60386 29 100.0 32 ............................. CTGGCGCTCGTGGGGGTATCACTTACTCTCAA 60325 29 100.0 32 ............................. CGGATATTGAGTACGCATTCCTGAATAACGGC 60264 29 100.0 32 ............................. CAGCAACTCGGTAGTGTGGGTTTGATGATTGA 60203 29 100.0 32 ............................. AATATCGGGATCATTGATGACCCGGCGAAAGA 60142 29 100.0 32 ............................. CTCTGGCAAACAGACGGCAGTGCGCCGGAGCA 60081 29 100.0 32 ............................. TGTGAGCGCTGGTACGAAATCCGCGCGGCGGC 60020 29 100.0 32 ............................. GATTACGCTCGACGGCCCAACGCGAATCACTC 59959 29 100.0 32 ............................. TTACCCCGCCGCACTGGGAGCGAGTGACGAAA 59898 29 100.0 32 ............................. TTGACGGGACTGACCAGACGTCACTCGGCCAA 59837 29 100.0 32 ............................. TTCATCCTATTAATATTCAGTCGGCGTCGTTA 59776 29 100.0 32 ............................. CTGGTCACTGGCAATCAGGCAGCAGCCGTACT 59715 29 100.0 32 ............................. GGACCCCCGATTTAGCAGTTGACAAGTTGTAT 59654 29 100.0 32 ............................. GGAGCCGTAAATAGCAGCCTCAACACAACGAC 59593 29 100.0 32 ............................. CCCTTTGGTCTGCACGATCACACTATTGGTGA 59532 29 100.0 32 ............................. CACGACAGCAGGCAGCGAGGGGCGACCGAATG 59471 29 96.6 32 ..........................T.. AAATGACAGAGCGCGAAAAGCTTGAGGCGTGG 59410 29 75.9 0 ..A....T.....C...A..AC......C | ========== ====== ====== ====== ============================= ============================================ ================== 31 29 99.1 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGAGAGATTGAACCACCGCAACCTGCGCCAGATATGCTGCCTCCGGCTATACCAGAGCCGCAGTTACTGGGTGATGGCGGGCATCGGGGACAGGGGTAATGAGTATGGTGGTAGTGGTTACGGAAAATGTACCGCCGCGCCTCAGGGGACGGCTTGCTATATGGCTACTGGAGATCCGAGCCGGTGTGTACGTCGGTAATATTTCAAAGCGTGTACGGGAAATGGTCTGGCAGCAGATTACGCAATTGGGAGGTGCCGGGAACGTGGTGATGGCCTGGGCAACGAACTCGGAGTCCGGCTTTGAGTTTCAAACCTGGGGAGAAAACCGACGTATTCCGGTAGATCTGGATGGCCTCCGGCTGGTTTCATTTCTTCCTGTTTAAAATCAGCAGGTTATTCGCTCTTTAATAACACGGGATTGTTACTGATTGGTTGGTAGATTGTTGTTTGGTAAAAAATTTATTTGAAAACAAAGGCATATGTTTAGA # Right flank : GCGCTATACGCAGCCTGCCCCTGCAATCTCCGCTAAACACCCATCACACTTTCCCGGTCTTCGCCAGCTCCTTTAGCAGCGGCAGCATGACGCTGACCACCTCGCGACTGCGGTGCGTAATGCGGCCAGGCAATGTTTTATCCAGGTACTGCTGGTTATCAAGACGCGCATTGTGCCAGCTATTTCCCTGCGGAAAGTCACGCGTTTTTTTACGCTGTTGATAGCCGTCTTTATTGCCCAGTGACCAGTTAGTCGCTTCCACCGAAAGAACAGGAATACCCGCTTTATCAAACGCTTCGGCATCATTACAGCAGCCCGTGCCTTTAGGATAAGCGGGATTTAAACCGGGATTCATGGCGGCGGCGATCCCGAGGCTTCGGGCAATGGCCAGCGCGCGGTCGCGGGTCAGTTTTCTCACTGCGGCAGGCGTGGTTTTACCGCTGTTAAAATACAGTTTTTCGCCAATAATCAGGTTATCGAGGTTAATAACCAGCAGGATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 76879-75201 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGIT01000003.1 Klebsiella sp. RIT-PI-d NODE_2_length_598449_cov_38.8215_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 76878 29 96.6 32 ............................T GCTTCTAAGCCAACATCCTGGCTGTCTGTGCC 76817 29 100.0 32 ............................. ATCGCCCTTACCTTGCGTTAACGCTCCGTCCA 76756 29 96.6 32 ............................T GTAGGATAGGTGGGAGGCTTTGAAGCGTGGAC 76695 29 100.0 33 ............................. GCCGCTGAAATGACGTCGGTTCATGAAGGTTAC 76633 29 100.0 32 ............................. CCATTTGGCTTGCACGACCATACTATTGGTGA 76572 29 100.0 32 ............................. TGTTTTCAATCAACTCAGCTGAATCAGTGGAA 76511 29 100.0 32 ............................. CACCGAGGCGACGCCGTGGAAGCTGGCACGCC 76450 29 100.0 32 ............................. CTCAACGAGCTGCGCAAGGCGTCCGGTCGCGA 76389 29 100.0 32 ............................. CAAAACCTGCCGCACCCGCTAACGATTCCATA 76328 29 100.0 32 ............................. GCGTTCAAATCCAGTACGGCCTGAAAGATGCT 76267 29 100.0 32 ............................. GCGCGTCAAAAGAAGCCTCGCTACCGGTGGTG 76206 29 100.0 32 ............................. GGTGTCTGGCTTAACTGCACCGTAACGCAAGC 76145 29 100.0 32 ............................. GCGAACTGACTATTTTTCGCAACTGTCGGGAG 76084 29 100.0 32 ............................. CGCGGTGAGCCGTCGGAAGGAATGCTGTGCTC 76023 29 100.0 32 ............................. AGGGTGAAGAAAGTGTCACTAATTTGGTGACA 75962 29 100.0 33 ............................. AATGAGAAAGAAATCGCAGCAATGAGCGTACGC 75900 29 100.0 32 ............................. CTCATGACGGGTTAAAAACTCCTGAACCTGAT 75839 29 100.0 32 ............................. AAATTAAGATAGTAGTGGATGGGGCAACCGTG 75778 29 100.0 32 ............................. GAAATGGGCGCTGCCGAAGACATCAGCACCTG 75717 29 100.0 32 ............................. TCCGGCGTCATTTCCGGGATGCAAGAGGATGA 75656 29 100.0 32 ............................. GCGTGATATAGCCGAATTCGACAGGGCAGCAG 75595 29 100.0 32 ............................. TTGAAAAACAAACCCCTCACCTAACGTGGGAT 75534 29 100.0 32 ............................. TCCCTGAGGAGCAATACGCTGCAATGTGGGAG 75473 29 100.0 32 ............................. GACCAGAACGGCGGCGAGACATGGGAAATCCA 75412 29 100.0 32 ............................. GTTGCGGCGATCTGGTTTTCGTTAAGCTCCTG 75351 29 100.0 32 ............................. CGGTTTATTTGATGCGTACCCTGCCAGCTGGG 75290 29 96.6 32 .........G................... ATAGAGCAAAGGGCGAAGCTGAATTACGTGGC 75229 29 96.6 0 .........G................... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.5 32 GTGTTCCCCACGCGAGCGGGGATAAACCG # Left flank : AAACCGCGCGTCATCGCGCTTCAGCCTATTAGTCAGAAAGAAGATGCTACCCGTTTGTGCATTGAGACCTGTATTGCCCGCAACTGGCGATTATCGATGCAAACGCATAAATATCTTAATATTGCCTGATAGATCAATAATCAATCCCGTTCTTTATTGTTAACTATCCCGGCCGCGTAATAGTCGCCGGGATATCGCGCCGTTCAGGCACCTCGTCTGACAATCTCCTTCCTGGTTCTGATGTTTACGATTAAGCACCTGCCGATCGCTTTTTATTTTAAATGAAGCAGAAAAAGGTAGAGTACGTCCCATTTCAGGAAGAGAATTGTTTTGCTGCGGTAAGTCCGGAATTAATATTTTCGATGATTTTATTTTTATGTTTAAAATCATGGCGTTATCGAGTTTTTAACGGCTTCGTGGTGTGGTGATTATGTTGTCAGTGTGTTGGTGAATTGCGCTTGTGATAAAAAGGTCTATTGAAACAAATACATAGGCTTAGA # Right flank : ATACCGGGAAAATCAGGGAAAGACTTTCTTCAGACAGGCGACATTACTGTCGCCGGTTACATTCAATTGCGGCAAGACACTCCGCGCCTCTTTCCCTGCGTAAGTCGCCGGATTCCGCTACTCTCCGCGATAAACGCAGCCTGCCGTACAGGTTTCTTTGATCATTACCGCACTCAGCAGCGGAACAACAGGTTTCACCTGATCCCAGATCCATTTGGACAGCACTTCGCTGGTCGGATTTTCCAGACCGGGGATGTCGTTCAGATAGTAGTGATCCAGACGATCATAGGTGGGCTTAAATGCCGCTTTAAGTTCGGCGAAATCGATAATCCATCCGGTATGGGGATCGACTTCACCGGTGATTTCAAGACGCACCATAAAGGAGTGTCCGTGCAGGCGACCACATTTATGGCCCTGCGGAACGTGAGGCAGATGGTGAGCGGCTTCAAAGATGAAGTCTTTAAACAACGTGGTGGACATGGTGAACTCTCAGGCTTACG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //