Array 1 9566-10939 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOUB01000034.1 Nitrosomonas communis strain Nm44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 9566 36 100.0 34 .................................... TTGATCAATTGCTTCAGCCATGCTGCCGCGTCTC 9636 36 100.0 34 .................................... CGAGTACGAGCGTCGGGTGGTTGTCGCCCATGAG 9706 36 100.0 35 .................................... TCAGCCAAATGAATCACACCATCAGCAAAACCTAG 9777 36 100.0 33 .................................... TCCCAAGTACTGTCTAATCCTTTAGACTCTGCC 9846 36 100.0 36 .................................... TCAGTCTTCGGAATTCATTGTAAGTTAATTCAATAT 9918 36 100.0 35 .................................... CCAGGATAATTATTGTGTTTGCATTTTTATTGATT 9989 36 100.0 35 .................................... TTAAAACAGATCATTAATCCTACGAGCATGGCTAT 10060 36 100.0 35 .................................... AATCTTTGCCAGAAAAGATTCTTGTGCATCTTTCC 10131 36 100.0 33 .................................... GCTCAAATCCACTTTGATTTGTTCATCATCACC 10200 36 100.0 36 .................................... TTATAATGATGATTAATAATATCGTCTACCGTTATC 10272 36 100.0 33 .................................... TGGTTTTGCGCCACAATTGGGGCATTTTTGACC 10341 36 100.0 33 .................................... GTTCATAACTACCATTGCATTAATCTTCATTAC 10410 36 100.0 33 .................................... CTTTCACCCTTGCGCTCGTAACCTTTACATCTT 10479 36 100.0 36 .................................... AATATTTGGTAGAAACATGTCAGCAAATCCTCATTA 10551 36 100.0 35 .................................... CCCCCTTGATTATTGTCTATACGGTTTTCAAGCTT 10622 36 100.0 34 .................................... TCAGGCTGCTGCGGAATTTCGTTTAGGTATTCAA 10692 36 100.0 34 .................................... CAGGCACTCCTGCACATGCTCGGCCATACCCTGC 10762 36 100.0 35 .................................... TGTAATTCAGCAACAATATTATCAATGAGTTTTAG 10833 36 97.2 35 ..............A..................... ATATTAATCACAAAGTTTTATCAGGACCTGATTCT 10904 36 80.6 0 .A......A.....T..T.....C.........A.T | ========== ====== ====== ====== ==================================== ==================================== ================== 20 36 98.9 34 GTTGAAACTGTGCCCTGAATTAAAAGGGATTGAGAC # Left flank : ACACGCTGCCAGAGAGGATCACCCTGCAGTTCGAGACACCACTCAGATTACAACATGAAGGACATGCCCTATCTCCGTCCAAGCTTAATGCGCGCACATTGCTGATGGCGTTAGTGCGGCGAACCAGCCTGCTGGCTGAAATTCATGCAGGCCACTTGCTCTATGATGCTGCCACGTTTTCCGCCATGGCAGAAGCCGCCAGCAGGATAGAGAGTAAACATAATTTGATTTGGCGTGATTGGACACGCCATTCATCGCGGCAACAACGCACCATGCAACTGGGCGGCTGCATCGGCAGCTGGCAGCTAAGTGGCAATCTAGCACCCTTTAAGGACGTGCTGTGGCTGGGATCATGGTTGCATGTCGGTAAGGAAGCAAGTTTCGGGCTGGGTAAATACCATTTATTAGCCCACCAGGAGATATAACTATGACCAGCTTGGAAAATCATGCGGATACCCATGCCAATCAATTGATTAATAGAGATAAAATGACAATGATGA # Right flank : TAATTTAGCGGGTCAATATCATCACGGCAATTGGCAAGCTTGCCGCAGCATTTGTTTTTCGCATTTTTTACTACACTGCCTAAACCCTCCAGATAGAACTCGTGTTTTTTAATGGAGTGTATTGAACAGCCAAATTGCTTCAAGAAAGAAATTGATCAGAGAGTAGTTATCGCCATTTACTTTGAGCTAGATAACGCATAGTCATGTAAACGCTGATCTTTGATCTACTCAGGCAGAACGATAGGAAGTATATATATTTTTGGAGCGATTGCGTAGAAATCAGATTACTTAAATCCACTTTGAGATTTATGAGTTCCCGCTCGGTTTATTTAATTTGCTATGACGTAAGCTGTCCTCATCGGTTACGGCAAGTGCATCAGTTTCTACTTGGCTACAAAACTGGTGGGCAGAAATCATTTTTTGAATGCTGGCTAACTTCGCAGGAGCTACGCACTGTAAGAGTGCGTCTTGCCGAGTTGATCGATCAAACTGAAGATCGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAACTGTGCCCTGAATTAAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 5159-3511 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOUB01000016.1 Nitrosomonas communis strain Nm44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5158 28 100.0 32 ............................ AATCTCACCTATGGGTAACACTGCTGCTGTTA 5098 28 100.0 32 ............................ GCTCGAGGTGGACACGTCGGCCGGCGTGTTGA 5038 28 96.4 32 ....A....................... CGATCAGTTCCTCGGGCATCGGTTCGCCGAGC 4978 28 100.0 32 ............................ TATATCTCGATCAAGGAGATCATCGAGCACCA 4918 28 100.0 32 ............................ AAATTCAGAATATGTTTCTATTTTAGCTATGA 4858 28 100.0 32 ............................ TCGCCGTTAGACTGGCATCTTAATGTGCTACC 4798 28 100.0 32 ............................ GTGCTGGGCCACTGGCTCAGACGCGCGCCGAC 4738 28 100.0 32 ............................ ACCGTGTCACGCAGCTCGCGCAGGATTTCCGG 4678 28 100.0 32 ............................ GTGCTGGGCCACTGGCTCAGACGCGCGCCGAC 4618 28 100.0 32 ............................ ACCGTGTCACGCAGCTCGCGCAGGATTTCCGG 4558 28 100.0 32 ............................ GTGCTGGGCCACTGGCTCAGACGCGCGCCGAC 4498 28 100.0 32 ............................ ACCGTGTCACGCAGCTCGCGCAGGATTTCCGG 4438 28 100.0 32 ............................ AATTAGGGGAAGCAGAATTACCAAAGGTTGTT 4378 28 100.0 32 ............................ GGTATAGGCAAAGCTGCTGAAAGTATCTTCAG 4318 28 100.0 32 ............................ ATACCCGCTGCAACCACGTTTTGGCGTCCAGT 4258 28 100.0 32 ............................ ATTTTCGGAATCGAATTGAATTGGATTCACAA 4198 28 100.0 32 ............................ TTAAAAGCGGCTTGAAGTCTTTATCTCAGACC 4138 28 100.0 32 ............................ AAGTCCATTTGCTCCACCTTCACAAATACAAC 4078 28 100.0 32 ............................ CAAGTGCGCCGAGATCGTTAATGCAAGTAGTG 4018 28 100.0 32 ............................ TCGAGGAGCCGATTGTCTCGAACCGCTATGTC 3958 28 100.0 32 ............................ TTGGTGCGGCAGGTGCGAGACTTTCTAATCCC 3898 28 100.0 32 ............................ ATCTATCGTCATCCGATCGCCAGTGTTTGATA 3838 28 100.0 32 ............................ TGCAAAAGCCCGACTAGCGTATTAACGCTGCG 3778 28 100.0 32 ............................ TGATCGTGAAGCTGTACAAAAAGGCGCTGAAA 3718 28 100.0 32 ............................ ACAAATCCGCCGACGCTTTGGCCGCGGTCAAT 3658 28 100.0 32 ............................ GCTCAATCGCTGCCACGCCTCGATCTCGCTGT 3598 28 100.0 32 ............................ GAGAACGTCGCGCTCAACAAGCCCTGGGACGA 3538 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 28 28 99.7 32 GTTCGCTGCCGCATAGGCAGCTTAGAAA # Left flank : ATGCTCGCCCGTTTTAATGCCGCGAAATGGCTGGACCGCCTGAGCGACTATTTACATTGCACGAGCATCCGCCCCGTGCCTGAAAAGCTTAAGGGATATGCGATTTACCAACGCCAGCAACCCAAAACCAGCAAAGAGCGCTTAGCCCGGCGTTATACCGTTCGGCATAATGTGAGTTATGACGAGGCGTTGCTTCGTTATAACGGGATGACGCATAAATCCATAACAACACCGTTTATTCGCCTCAAGAGTTTGAGCAGCGTTAAAAAATTTTGTTTGTGGATTAGAAAAACAATAATTTCAAAACCTTCAGGAGGTACTTACAGCAGCTATGGTTTAAGCAACAAAGCCACCGTTCCTGAGTTTTGACCCATTTTTTTTGCTCTTTAAAAATATATAAACTAATCAGTTAATTATATTTATCAGTTTTTAGATGGGTAAATTAAGGAAAATCCCTCTGTAAACTGTTATGTGACTGGCTTTAAGTTTTTTTATGATCT # Right flank : CAGCAGATACAAAAGAATTCTGTGACTTTTGGAAAGGATTACTTGCCCATCTTTCTAAACTCCTGCATGAGGTCGAGAGTTTGCGTTCCACTTTCTTAACCTCTTTCCTGAATTGATCTGTTTCGAAAGTAACCTTACATCCAGTGCAACGGTTACCATCCTGCTTAAACTATCTCAAAGGCTTCTTGATCTTAGTCTTGCAATTAGGGCAGGTAATTTCGATGTTCTGGTCGTTAAATAATCCCATAGCTTCCCCTTTAATAGTTTGGTGGAACTTTCTATTCTATCAGCATAGGAGAGGCCGCCTATTCAGCCAATGTGTAATAAAACTATTTAAGGATATCAATTGTGATGACTGATTCTTTTTCACAATCCATGCAAGTGAAGAAAGTGTCGACTATGCCCATATCTCCAAATATTTTATGTGGTTCACCCCCTATTCTTTTCAGCTTTGTCGAACCGCAATGTCTACATCGATGACCATGAGGGTTTGCGTTATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //