Array 1 8201-10331 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGQJ010000022.1 Xanthomonas cassavae CFBP 4642 strain NCPPB 101 scf_21965_22.contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 8201 31 100.0 35 ............................... AAGTGGCCCCTGCCCCTGGGAGTACCAACCGAAAC 8267 31 100.0 35 ............................... AGCAGTGCCGGGACGCTGCCCCTACGCCGCAGCTG 8333 31 100.0 34 ............................... CACAACGCAGTCACCAAGCAGTCCACTTGGTGAT 8398 31 100.0 34 ............................... CGCCGCTTCGTGCTCCCGCTAGCAGATGTCATCC 8463 31 100.0 36 ............................... ACCCACGGCGCAGACTGCCGAGACCAGTTTGAGGTG 8530 31 100.0 34 ............................... CCTCCGGACAGGCAAGTTGCCCGCTCCTCATAGC 8595 31 100.0 34 ............................... CTGAATCCGGGTACGACCTACGCAACCTCCCCAG 8660 31 100.0 35 ............................... ACTAGACCTTTGACTTTGAACCAGCGCATGTTGCG 8726 31 100.0 34 ............................... AGCGCTACATCTCTCCAACGGTCCGCAAGGTACC 8791 31 100.0 35 ............................... GTGCTGCCCGGTGTGGCCATCAATTGCCGTTGCGG 8857 31 100.0 34 ............................... TGGAAGCCCTTGACGATCTGGTCGGTGTCGTCGG 8922 31 100.0 34 ............................... GCCTTGCCGTTTACGCCCACTTCCGTACGCAGAA 8987 31 100.0 34 ............................... ACGGATTTGGACGGGTTCCAAGTGGCTCGCGATG 9052 31 100.0 34 ............................... TTTTGCCCTCAGCTTCGTGCCGTCGCGCCTACCA 9117 31 100.0 35 ............................... TTCTTCTTCCGGCCCCTCTGCCGGGTCATCTTCTG 9183 31 100.0 34 ............................... TAGGTACTTCGCCAGCACTTCGGGCGGGATGGCC 9248 31 100.0 35 ............................... TCAATGTCATTCATTGCCATCCTCCATTAGAGGGG 9314 31 100.0 34 ............................... AAAAGCGCGTCAACGCGATTTTCGTGGATCGTGC 9379 31 100.0 35 ............................... TCCGCCAGCTCCATCAGGGTCAGTCCCGGCTGGCG 9445 31 100.0 35 ............................... AGCCATTCGGCACCCCCTCGCCCTGGGGCTGGGCG 9511 31 100.0 34 ............................... CAGATCCCCTACCCTGACCCGGGCCCCCCGGGGG 9576 31 100.0 35 ............................... ATCGCTGACGTGCTTCGACTGCGGAGGCCGGCCGG 9642 31 100.0 34 ............................... ACACGGAATGCGCGGCTTGATCGTGTGCACCTCG 9707 31 100.0 34 ............................... TTCTTGCGCCTGCGCGATGCCTCTGGCGCTGACT 9772 31 100.0 34 ............................... TTCGCGGAGATGCTGATCGAGGACTCGCTGCGGG 9837 31 100.0 34 ............................... ATCACCTGCTGCACGTCAGCCCGCAGCTGTTCCT 9902 31 96.8 36 .............A................. AGCCAGGCCAAGAGCGGCCAGCCGCGGAGCTGCAAG 9969 30 83.9 34 ...A.....-.........C..A.C...... AGGGCGTGCAGGAAGGATTAGGGGTGGCTGAACG 10033 31 93.5 35 .......................TC...... CGCGCGGTGTTTGCCGACACTGGCAACAAGCACAA 10099 31 77.4 36 ...AT....C.G.C.........G...C... AACATTGATCTACTGCCTTACGTTTTGCCCGACGCG 10166 31 71.0 32 .....AT......A.C.AT.C...C...C.. TCAGATCGAAGTCATGCCTACGAATTTTGTAA 10229 31 77.4 40 A...T....G.GT.C..........A..... GACCCGCCCTGCCCAGCATATACGGTGCGTGGAAATACCC 10300 31 74.2 0 ACA......C.G.......T...G......T | G [10323] ========== ====== ====== ====== =============================== ======================================== ================== 33 31 96.2 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AAATGACGCGACTCAAGTCCCATGATGATTCTTGTCAGTTACGACGTCAGCACCAGCTCTCTCGGGGGCGAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGTGACCGTGGCCAGCGCGTGCAGTTCTCGGTCTTCGAGATCGAAGTCGATCCTGCCCAATGGACTGAATTACGGCAACAGCTATGCGACCTGATCGACCCCTCCCTGGACAGCCTGCGGTTCTATCACCTTGGCGCGAAATGGGAGGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGAACCTCAAAGGTCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAGTCGGGCAGGTTCGCAGTTTCCTCAAGCAACTGATTTGCAAGACAAAAAATAAATACATAGCGGGTTCATGGGTCCGCATGACGACTTCTCGACTGTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGAGCG # Right flank : TGCATCATGCGACGTACATCTTCCTGTAGTTCATGCCGCCCGCTGACCGGAATCAGGTTGGCATATGCCGGGGTTCTGCGTGAGGCGCGGGTCATCACGCCGGTTTGTGGTTAGAAGATTGGACGCTGTCGATCAACGCTTGAATCCCATCTACTTGACCGTGATAGTTTGCGGCGTACCTGCGGGCTTGCCGTCGACCATGACCTGCGCAGTGTAGGTGCCGGCCGGCCAGCCATCTGGCTTGCTGAAGCTGATGTTGGTGGTTTCTGCGCCACTAGTGGTCAGCGTGGCGCTCTGCTCGCCGGCCACCTGCCCATCCTGATAGGTGAGTTTGGCAGAGACCGGCACATTGCTCGCACTGCCCTCGGTCTTGACCGACACGATGATGGTGTCCTTGCTGCCGACGCTGGCCGACGGCGTCACTGTCTTGTCCGCAGCGGCAACCGTGCCGACTGCAACGCTGGACACCGTGACGCCGGCTCCAGCCATTGCCGCGCTGT # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-40] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //