Array 1 65706-65370 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009803.1 Streptomyces sp. FR-008 plasmid pSSFR1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 65705 28 92.9 33 ........T....G.............. GACCCGGTGACCCCCTCGAGCGCAGACCGCCTC 65644 28 96.4 33 ....C....................... CTGCGCCTTCAGCAGCGCGTTGCCGGTCATGCC 65583 28 100.0 33 ............................ GTGCCTTGGTCTCCAGCGCGGTGTAGGAGGAGA 65522 28 100.0 33 ............................ CGAGGGCTACGTCCTGATCCGCCGCAAGTACGG 65461 28 92.9 34 .............G............T. CGACGTCGCCGCTCGATGGCGACTCGATCCGGAG 65399 28 89.3 0 .C.......T.G................ | C,A [65373,65393] ========== ====== ====== ====== ============================ ================================== ================== 6 28 95.2 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : TACTGGTCCCTTCGACAACGACACAGCCGCGGACTTCGCCAACGCCCTCGACGAAGCCGAGCCCGAGGCTCGCGAAGCCCTGATCCGAGGCGTCCTCGTCCGGACGATCGACGCAACCGGCTATCTCGCGGATGCGGAAGAGGCGGTGGCCGCCGCCGCCTTGATCGCGGCGCAATGCCCGGGAGGCGAACCCGTCGACATGTCCTACGGCCCGGAAACGCCGATGCCCGTGTTCCCTTCCGACCTTGGGGCACTCGCCGACGAAGCCCTCGCCCGCATCGTCAACGACCAGGATGGGCTGGCCTCAAATTGGGTCGACTCGCAGGACTGGAAGCAGTGGCGAGCCATACTGACACGCCTTCGTGCAGTGCTTGCCCCGACACCACCGTCCATTGCTCTCTTCAACGTCCAGTCGTAACGGAGCGTCACTCAGCACGGAGCTGAGTCAGAACCTCTTGAAGTGAACGAAACCAGTTGACCGCCACCCACGACACCGGCAG # Right flank : ACTCCGTGCCCCCGTTGCCACCCCGCCCCTGAAGCGCTCCATGCCCGTGTGGTTCCCCATCAGGCGGAACGCGAACAGATGTTGGACCTGAGCTGATGACTGGCACCAGGTAGGTAGTTGGCGAACAAGCTTCCTGCGCAACCTCACGGCCTATCACGTGCCCCTCCTTGGTCGTCGGTCTCTCTCACCGGTGAGACCGACCGCCGAGGCCCCCCGGCCGGCTGTCCCCCGACGTGCACCAGGAAGTCCTGCTTCTGGTCGAGTACGTCGACAAGGACGTCGCCGTTCTCACACAGATATGCCGAGTCCCCCAGGCCCTCGTGACACGGCCCTGAGGCCCTGGTCTGATCAGCGGACCGGGTCAGCGGGTGTTGAGGACCTGCGCCTCACGCAGGTCAGCCACCAGCTCCGTGGTGCGGGTAAGGCTGGTCACCGCCCGCCACGACGCCCTGCGTACTTCGCCGTGACGGGGCTGGCCCTGGGCGTCCTGTTCGCCCCAG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 67069-66305 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009803.1 Streptomyces sp. FR-008 plasmid pSSFR1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 67068 28 100.0 33 ............................ GGCCGAGGAGGGCCGCAGGCAGGCGGAGAGCCG 67007 28 100.0 33 ............................ GTGCGACTGCCTGCCGTTCTGGCCGGACTGCCC 66946 28 96.4 33 ...C........................ GCCCGCGCCGCCCAGCAACGCGCCGAGGAGCAG 66885 28 100.0 33 ............................ TCGCCACACCTATGCATCACGACCCGAAGGACA 66824 28 100.0 33 ............................ GGCGGCGAGGCCCTGGTGACCGACCCGGCCGCC 66763 28 100.0 33 ............................ GACAACCAGCGGCTGATCACGGGCGCCCGTGCC 66702 28 100.0 34 ............................ AGCTCCGGCTGCGCCTTGTCGATTCCCTCGATGA 66640 28 100.0 33 ............................ GATGGTCGAGTACTCGTTGTAGGTGTCAGCGAT 66579 28 100.0 33 ............................ CGGGCCGCCAGGGGGGCGCACATCGACCCCAGC 66518 28 100.0 33 ............................ GTACGACGCAGACACCGCGACCCTCACCCTCCA 66457 28 100.0 33 ............................ GGTGTACGCAGAGAACACGGTCGGTGTGTTGGC 66396 28 100.0 33 ............................ GCTCAGCAACGAGCAGATCGCGGTCGTCCTGCG 66335 28 92.9 0 ..........T...............T. | CG,T [66309,66312] ========== ====== ====== ====== ============================ ================================== ================== 13 28 99.2 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : GGCAACGGGACAGAGGATCTCGGTTGAGATCGATGACCCGAGCAGGGACACTCACGCGATGAGCCCCAGCACATCGTCGGAGCCGATCGAGCGAGGGTGGGACGAGCCCTGGTATCGGGTCCGCATGGAGAACTTCCAGGCATCGTTCCTGCCCAGCGCCAGCGAGGACTTGGACGAGGTCTGCAACGTCGATGTCTTGGTGACTCTGACGGACGGATCCTGTTGGACCGCGACCATGTTCACTGTCGCGGAAGTCGAGCGCCTGATGAAGCTTTGGGCAGGGACCGACGAGGCCCTCGGGGGCCGGTATTTCTGGGTCTCGGACGGCCTGATCGTCAGGGATCCCGGCATCGGCAGCATGACCGGCGTGATCGCCGGACTGATCGAGAACGGCGAGTTCTCTGGGATCTTTCAACGGGTGATCAACGACTGACCAAAGTGCTCGGCCGCCGGAAGCGTCGTGGATGGCCAGGCCACGTCGTTCTCGCGCTCGATGGCCG # Right flank : TTCGCAAACGGGTCCTGCTCGCCCCGTAGTCGTGTTGTCAGTGCTTGATGCGAGGATCCGGGAGACCATACGCAAGGAGATCAGCATGGGCACCTGGGGTACTGGTCCCTTCGACAACGACACAGCCGCGGACTTCGCCAACGCCCTCGACGAAGCCGAGCCCGAGGCTCGCGAAGCCCTGATCCGAGGCGTCCTCGTCCGGACGATCGACGCAACCGGCTATCTCGCGGATGCGGAAGAGGCGGTGGCCGCCGCCGCCTTGATCGCGGCGCAATGCCCGGGAGGCGAACCCGTCGACATGTCCTACGGCCCGGAAACGCCGATGCCCGTGTTCCCTTCCGACCTTGGGGCACTCGCCGACGAAGCCCTCGCCCGCATCGTCAACGACCAGGATGGGCTGGCCTCAAATTGGGTCGACTCGCAGGACTGGAAGCAGTGGCGAGCCATACTGACACGCCTTCGTGCAGTGCTTGCCCCGACACCACCGTCCATTGCTCTCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 69604-67681 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009803.1 Streptomyces sp. FR-008 plasmid pSSFR1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 69603 29 100.0 32 ............................. CGCCGCCGCCGGTTCCGCGACGTCTACGCCCG 69542 29 96.6 32 ............................C ATCTTGGACAGGTCCATGCCCTCGGTCTCGCC 69481 29 96.6 32 ............................C TGCCTGACAGGCGCTCAGGGGGGCGTCTAGGG 69420 29 96.6 32 ............................C TCGTTCACGCTGTCTCCCCTGGTCTGCGAAGC 69359 29 100.0 32 ............................. TGCCGGGTGGCGACGCCGGTGTTGCCGACGAT 69298 29 100.0 32 ............................. CAGACACCGGCTTCGAGGTTGTCTCGGACGGC 69237 29 100.0 32 ............................. GTGTCGGGCAGCCGCAGCGTGATGCGGGCGTA 69176 29 100.0 32 ............................. CAGCGGGCCCGTGATCGGACTCATGGCCTGGC 69115 29 96.6 32 ............................C GTCTCCCCGACGATCGGACCTACCGACCGTGC 69054 29 100.0 32 ............................. GGCGTGAGGCTCCCGAGCTTCCCCTTTTTGAG 68993 29 96.6 33 ............................A GTGACATGACGGATTGAGTGGGAGTGGATGGCA 68931 29 96.6 32 ............................C TGGTCGGTCATGACTGCGCCCCGCCATCGCCG 68870 29 96.6 32 ............................C TGGTCGGTCATGACTGCGCCCCGCCATCGCCG 68809 29 100.0 32 ............................. ACGCTCTACCCCTACAAGCTGCGGATCAGCCT 68748 29 100.0 32 ............................. TGGGACTACCGCTACTGGCAGCCCATCCTCAT 68687 29 96.6 32 ............................C CATCACGGCCGGTGCCATCCTCTTCTCCGTCC 68626 29 100.0 32 ............................. TCGCCTTCGGTGCAGGCCGCCAGGCGCCACAC 68565 29 100.0 32 ............................. TCACACCAGCCCCGGCACCCCCGCCACGCGCG 68504 29 100.0 32 ............................. TGCTCGCGGCGCATGCCGCCCCGGGAGTACGG 68443 29 93.1 32 .............C..............C CCTGACCCCGAACACCACCGAAGCACCGGACA 68382 29 96.6 32 .............C............... GCCGGCCGGGACGTGGCCTACAACAAGCCGGT 68321 29 96.6 32 ............................C CAGACGGTCTCGCCGCGCAGCGCGTTCAGGGC 68260 29 93.1 32 .............C..............C GTGGCTACGAGTGGTCTCGTAGACCTGGACAA 68199 29 93.1 32 .............C..............C TGCACATCCGGGCCGACTCGGTGGGCCGCGTC 68138 29 93.1 33 .............C..............C CTTGTGCGGTACCGGTAGGTAGACCAACACGGG G [68117] 68075 29 93.1 32 .............C..............C GAGCCGGGCGCGGTCTACCGGATCTCCTGCCA 68014 29 100.0 32 ............................. GTCTACCGGCACTACGCCCCGGCGACCTGGAC 67953 29 100.0 32 ............................. TGCTCGCGGCGCATGCCGCCCCAAGAGGACGG 67892 29 100.0 32 ............................. ACCGAGTGGCGCCGCATCCTGGCCACAAGGAC 67831 29 93.1 32 .............C..............C CTTCAGGTGCTCTGCCATTTCCACCATGCTCA 67770 29 100.0 32 ............................. CCGTACCGGGCACCGGTCGGGTCGTAGTGACG 67709 29 82.8 0 ..........T..C......A...T...C | ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.1 32 GTCGGCCCCGCACGCGCGGGGATGCTCCG # Left flank : ACCGACAACGACGAGCGGGGGCAGCAGGGGCGCGCGTGGTACGACGCTGGCGCCCGGGCCCAGGCCGCCGTCACGGAGTGGGCGCGTGAGGCCGCGCCGGCAGTCGGCCCCGCACCCGTGGGGATGTTCCTGACCCCCTCATGAGTCTCGTCTTTGATGGGCTGTCGGCCACGCACCCGCGGGGGTGCTCTGGGCGGCACCATCTTCATCCGCCTCGACGCCATGTCGGCCCCGCACCCATGGAAATCTCGCTCGCCACGGTCATCGCCCTGGCACTCTGCGGCCGGCCGGCCCACCGGGTGCTGGGCGCACGGCAGTGGCCCACCGAGGCACATGCGTGGGTGTGGACCGAGAATGGCGTATTCGGGCTGTTCGGCCGCGACCGCGTGGACCTCCGCCGCCCCCTGGGCCGGCGCCCTCGTCGCACCTCCCGTGCCGAAAGGGTGACGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : CAGTAGTCGTTCTCGGTGAACTCCCAGTCGGTGTCGGCCCCGCATGTGGGCGTACGGACTTTTCTCCCCGGTGGCGTACGGACGAACGTCCCCAGTTCTGGCCGCGGGCAGCGGCAACGGGACAGAGGATCTCGGTTGAGATCGATGACCCGAGCAGGGACACTCACGCGATGAGCCCCAGCACATCGTCGGAGCCGATCGAGCGAGGGTGGGACGAGCCCTGGTATCGGGTCCGCATGGAGAACTTCCAGGCATCGTTCCTGCCCAGCGCCAGCGAGGACTTGGACGAGGTCTGCAACGTCGATGTCTTGGTGACTCTGACGGACGGATCCTGTTGGACCGCGACCATGTTCACTGTCGCGGAAGTCGAGCGCCTGATGAAGCTTTGGGCAGGGACCGACGAGGCCCTCGGGGGCCGGTATTTCTGGGTCTCGGACGGCCTGATCGTCAGGGATCCCGGCATCGGCAGCATGACCGGCGTGATCGCCGGACTGATCGAG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 75460-73657 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009803.1 Streptomyces sp. FR-008 plasmid pSSFR1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================== ================== 75459 28 100.0 33 ............................ CTGACGGCGCGTCAGGCAACGCCCCCGGGCGAG 75398 28 100.0 33 ............................ CGGCTTCTCGCAGTCAATGCAGTCATGCAGAAC 75337 28 100.0 33 ............................ CCGCGACACCCTCGGCGGTGCCGCGTGAGCACG 75276 28 100.0 33 ............................ AACATCGCGCACCGCGTGATCATCGGCGCCGAC 75215 28 100.0 33 ............................ GTAAGGAGCCCCACCCATGACCGCGATCAAGGT 75154 28 100.0 33 ............................ GCGCGCCAGCCAGCGGCCGGACCGGTTGGCGAC 75093 28 100.0 33 ............................ GCTCCCCGTCCCGCCCAACTTGCTCCTCGGCGG 75032 28 100.0 33 ............................ CGCGGTCCGCGCACCGAGCAGGGCCCGGATCGA 74971 28 100.0 33 ............................ GAACCCGGCACGCGAGATCATCAGCGCCTACGC 74910 28 100.0 33 ............................ GGTCGAGGAGGCGGGGCCGCCCGGGTCGTCGGC 74849 28 100.0 33 ............................ CAGGTCCAGGGTCGCGGGCCACGCCCACTGGCG 74788 28 100.0 43 ............................ AGGGCGCGGTCGAGTCGGTCGACGGCCGACCGGTGCAGGGTCC 74717 28 100.0 33 ............................ GCAGCAGGGCGCCACCAGTCCTCGCCGCCGCCG 74656 28 100.0 33 ............................ CGCGGTCACCTCCGCCGTGGGCCTGGGCCGCAT 74595 28 100.0 33 ............................ CGGCTCCGGCGGCCGCACCTGGCAGGACGTCAT 74534 28 96.4 33 ....................T....... GCGCCGGCGTTCAGCGCGATCAGCCCGGCGGAC 74473 28 100.0 33 ............................ CTGTGCTCGGCGGCTGGGGCCCATGCCACCGAG 74412 28 100.0 33 ............................ GACCTCGTACGCCTGCCATAGCGGTGATCATAT 74351 28 100.0 33 ............................ CTCACCCGCTCCCGCCGCCGAGTCGCCCCGCCC 74290 28 100.0 33 ............................ CCGGAATCCCCAGGTCGGGAAGCGTCATCGCGC 74229 28 100.0 33 ............................ GGGGCGCGTCTCCCACGACCACGAGGAACGGCC 74168 28 100.0 90 ............................ GCGGACCGAGCGTCGCGTCAACGCCGCCCAGTAGTCGGCCCCGCACGGGGATGCTCCGTAGACGCCGCCCTGGATTATGGCGAAGAGCAT 74050 28 96.4 33 .............G.............. CCCGTGTGGTCCGCCGAACTCGCCGGCGCTGAC 73989 28 96.4 33 .............G.............. GAACATCGCGGTAGTCGTGATCGCGATCCGGAA 73928 28 100.0 33 ............................ TGCCGTCGTCGTGGCGTCGCCGCGGTCGGACCC 73867 28 92.9 33 ...........G.T.............. GAGGCTGGTGTTCCGGCGGCCGGTCCAGGAGTC 73806 28 92.9 33 ............TG.............. GAGCTGATGGACGCCCTTCAAGGGCTGCTCGCC 73745 28 96.4 33 ...........T................ CTTCCAGACGCCGAGCCACTCGTCGCCCCAGGC 73684 28 85.7 0 ....................C.A..G.T | ========== ====== ====== ====== ============================ ========================================================================================== ================== 29 28 98.5 35 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : GCGCCGGCCTCTTCGTCACCCACCGCCTCGCCTCAGCCCGCATCGCCGACCGCGTAGTGGTCCTCCACCACGGCCGCGTCACCGAATCCGGAACATACGACGAGTTGCTACACCAGCCCGGCAGCCGCTTCGCCGAGCTACACCAACTCCAAAGCGGAACCGAACTGGTCCCGTGAACATTGCCCCGCCTGGCGTCGGCCCTCCCACACCTGACCCCATTCCCGGGGGAGCACAAGCCGCCTACCAGCAGCGCCTGGAGCAACGCCCCGTACCCCCAGCAGAACCAACAGCCACCTCAGCGCGACGAGCAGGCACGCACCGTCCGCGGATTGGGAAGGTGTGACACCCTCCGATTCCGTACGGTCCGCGAGCCTCTCTCGGAGGTCGCGTACATCACGATCTCTGAAGACGATCCCCATTCGCTCCCGACCCACGAACGAAGGGTGAAGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : GCAACAGGGCTCTGGGTGGGTACGCAGTCAGACGTGCGGCTGGTCATCTGTCGCCCCGCTGCCCACCGCGTCGGTAGCCTTAACTGATCGTTTCAAAGTGAGTTTGGCTGCGGGTCTTGTGCTCGGCGATCTTGGTCGGCAGTGTGTCCGGAATGCGTGCTGATCTTGTTCCTGACGACCTGTGGGAGCGGGTTGCTCCGCTGCTGCCACCTGCTCCTGAACGGCGCCACCGTTACCCCGGACGGTTGCGTGTTCCCGATCGGGCGGCACTCGCCGGCGTCATGTACGTGCTGCGGACCGGTGTCGCCTGGCGCGACGTCCCCGCGGAGGCCGTGGGCTGCTCGGGGGTGACGGCCTGGCGCCGGCTGCGGGACTGGACCGAGGCCGGTGTCTGGCCCCGCCTGCACGCCATCCTGCTGAGTGAGCTGCGCCGCGCCGGCCTGCTGGACCTGGACGACTGCGCCGTGGACGGGTCCCATGTCCGGGCCCTCAAAGGGGGG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 82615-79791 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009803.1 Streptomyces sp. FR-008 plasmid pSSFR1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================================================================ ================== 82614 28 100.0 33 ............................ CGCCCTCTACCGGCTGGTCGACTCCGCCGCCGG 82553 28 100.0 33 ............................ CCCGGGGTCGGTTGCGCGCGCTGTGACGGCCCT 82492 28 100.0 33 ............................ CCGCGTCGGGTCCGTCGGGGGCCGTGCGCTGGA 82431 28 100.0 33 ............................ CAGCCGCAGCGTGTCGATGCGGACGTAGCCGAA 82370 28 100.0 33 ............................ GGTGGAGACCGCCGGCCCCGTCGGCACCAGCCC 82309 28 100.0 33 ............................ GTTGGCCTGGGTCTCCTGCTGCGCCTGCTCTGC 82248 28 100.0 33 ............................ GTGGCCGGCCTCGATGACCCGGCCGCCGAGGGA 82187 28 100.0 33 ............................ TCCCGGACCGGCGCCACCGAGAACCTCAACGAA 82126 28 100.0 33 ............................ GAACCCGGACGGCATGCGCTGGGCGCCCTACGG 82065 28 100.0 33 ............................ CGTCCTTGAGCCACGCCCGGCGGGCCTCGTAGT 82004 28 100.0 33 ............................ CGCGGTGATCCACGCATCGTGCTGGACGCCGAC 81943 28 100.0 33 ............................ CTGCGGTTCGTGCAGGTCACTGCTCCGGGCGGT 81882 28 100.0 33 ............................ CACCTGCGTGATGACCTGTGCGATCTGCACGAT 81821 28 100.0 33 ............................ GCAGCCGGCCTTGGCGTTCGGGCGAGAGCTCAG 81760 28 100.0 33 ............................ CCCGGAGGGGGTGTCGGCCCAGAGCCCGTACAT 81699 28 100.0 33 ............................ CCCCACCGACCCCCAGCCGGCCGAAATCCCCCG 81638 28 100.0 33 ............................ GCTGCCCACCAGTCACGACGGCGCCGTTGACCT 81577 28 100.0 33 ............................ GTGGCGGCAGATGGAGCGGAAGGACGTGTTGCT 81516 28 100.0 33 ............................ CGCGCCGACGAACGCCAGGTCGACCACCAGCGG 81455 28 100.0 33 ............................ CGCGACGGTGGTGACCATGACCGGCACGGCGGC 81394 28 100.0 33 ............................ GCTTCCGCAGGGCGGCGGTGAGATTGTCGATGG 81333 28 96.4 33 ..........................T. GCTGGCCTCCATGGTCGACCTCACCGCCCGCGA 81272 28 100.0 33 ............................ GATCCTGAAGGGGGATCAGGGCCGCTCGAACCG 81211 28 100.0 33 ............................ GGGATGATCCGCAGAGGTGTTCTCCAGAGCCGG 81150 28 100.0 33 ............................ CACCCCGCAGTCGTCGGCGAGGTAGTCGAGGGC 81089 28 96.4 33 ...................T........ CCCTGACCGCGAGAGCCGAGTGTTTGGCGTTTG 81028 28 100.0 33 ............................ GGTCCCCGCGCCTGGCGGGCGCATTGAGCTGCA 80967 28 100.0 33 ............................ CTTCAGCGCGCCGCCGGTGAGCGCGGCGGTGAG 80906 28 100.0 33 ............................ GAGACCGCGACGCTTCCGGGTCTCGCGCTCCTC 80845 28 96.4 33 .............G.............. CATCACCAAGTCTGCCCGATTCGGGGCGATGGT 80784 28 96.4 33 .............G.............. GGCTTGCCGAGCACGCCGACCTGCACGGACCGG 80723 28 96.4 33 .............G.............. GCTCCTCACCCGGCTGCCCGAGCTGCGCGGCAT 80662 28 96.4 33 .............G.............. CCGCGACGGCCTGTTCCTCGACTGCCACGAGGC 80601 28 96.4 33 .............G.............. GTCCGCCCGCTGACGGCTGTCCCCGCCGGTCGC 80540 28 96.4 33 .............G.............. CCAGCTCTGACCCGCTTTTCAGCAGGGAGGGGC 80479 28 96.4 33 .............G.............. CTGTACGGCCTCAGTCGATTCGTGCATCGTGTC 80418 28 96.4 33 .............G.............. GGAGCTGGGGCTGTCCTGGCTGACCGTCGACAG 80357 28 96.4 33 .............G.............. CCACGTCGCGCAGATCGCCCCGGCCGGATCGTG 80296 28 96.4 33 .............G.............. GCTCATGGGCCTCGACATGCCCGTCCGCGCCGA 80235 28 96.4 32 .............G.............. CGACCACGCTGGGCAGGCCACCATCAACGACA 80175 28 96.4 33 .............G.............. GGGCTCGTCGTTCACGTTCCGCGTGCTCGATGG 80114 28 92.9 33 .C............A............. GTACCTGAAACCGCAGCGCCTCTTCTTCGTCGG 80053 28 92.9 204 ...........G...............T CTGTCCGAGCGGGACGCCGCGCTCAGCGTGAAGTCGGCCCCGCACCTGCGGAGGCACCCCGCTACCTGCGGCGAGGCTCGCGGGCCACGACGTGTCCTCTCCGCGCGAGCGGAGGTACCCCGTTGATGCCGTGCCCGAGGACGACGACGCCCTCTCCAACGTGAGCGGAGGAAGCCCGCATCAGGACCTCGGCCAGGGAAAAGA 79821 28 78.6 0 CGA........G..T...........T. | TT,T [79809,79812] ========== ====== ====== ====== ============================ ============================================================================================================================================================================================================ ================== 44 28 98.0 37 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : ATGCAGGCGTTGCCTTACCAAGATCGTGAACAGCGCATAGCCACGCAAACAACCTGCGGCCCCGACCCGGACCACCGGCCACCTCATCCAGCAGGCCCCGCGTCGAAGGCGCAAGGAAGCTCTCCCACAGCCGCTCACCCACAGCCCCGGTATCAAGCAGGTGCGACAGAAGAAGATTCGTCTGCCCACCGGCACGCTCCGCCGACTTCCCCCACAAGACCCCTAACGGGCCCTCCACCGACTCCAGCGGCACCCTTGCATCCGGCACGCCGGACCACCCTTCGCTCAGCACTCACGACTGCCCGGCACAGTAGAGGACACCACTGACAATTGACGGCGGACGGCCCAAAGACGAACATCCCCCACGGCGGGCGCCCGCACCACGCGGTCACACACCGCGCTCCCTGAACTCCACCACTCGCTGCCCGGCCCACGAACTAAGGGCGACGCACATGAATGAAAATGAGGCACTCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : AATCTCACTGGGGAGCGGCGCGGTCAGCGTGCGGCTGTTCCCGCGCTCGCGGGGGGATGGCCCTTGGCGGTCATTTCGGCGAACGGCACGTTGGCTCCGTACTGAGCTGAGCACCCGCCGGGCAGAGTTATTCCATCCGACCAAGGGAGAGACTGCAGTGTCGTCCGTTCCCCGCTCAGAACGATACGAGAACATCCCGACCGCCTTGGTGTATGACATCTTCGCGGAGTTGGCCACCCAGCTCACCGGTCGCTACATCCGTCTGTCCGATACCGCACCGTCTGCCGCGGAGCGGGACCAGTGGTGGCAGAAGGTGCTGGAGCTGCGCCAGTACAAGTGCGCAGTGCCCGCGCGCGACCGGGCAGCGTTGATAGCCCACATCAGCCAGTGGGAAGCGGAACTTTCCCGCCTTCGGGGCGCTCACTGTGTCTGAGGGCCGGGACTACTACCTCGCTGAGGAGGATCAGTGGGGTCGGGAGCGCGACGCCACCACAGCCAGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : GTCGGCCCCGCACGCGCGGGGATGCTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2003345-2003493 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009802.1 Streptomyces sp. FR-008 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 2003345 24 100.0 37 ........................ TCTTTGACCGGCAGGTCACATCGGACGGCGCACAACC 2003406 24 100.0 40 ........................ TCCTTGACGGCGAGGTCGGCACAGACCAGCACCCCTCGAT 2003470 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================== ================== 3 24 100.0 39 CAGCCCGGCCGGCGCTTGAGGCCA # Left flank : GGTGAGCCTGGTGACGACCTTCGCCACCTTCTTCCTCGGGCAGGCCCTGCTCGGGAACCTCTCCGCCTCCATCGGCGACCCCGGCGTGCTGCGGGCCGTCATCGGCGCCGCCCTCTACATGACCCTCATGGCCGTCTTCTCCATGGGCGTCGCCGCGATGCTCCGCTCCCCCATGCTCTCCCTCGGCATCCTCGTCCCCTTCTTCTTCCTCGTCTCCTCCATCCTCGGCGCCGTCTCCGCCACCGAGAAGATCGGCCGCTTCCTCCCCGACCAGGCCGGCTCGAAGATCATGCAGGTGGTGGCGCCGCTGAACGACGACACCCCCTACGGCCCCTGGGGCGGCCTCGGCATCATGGCCCTCTGGGTGATCGCCTCCCTGGCCATCGGGTACGCCCTACTCCGCCACCGCGACGCCTAGCCAGACGGAACCAGGCCATCGACCGGGCGGCCTCAAACGCCGGCCAGGCTTGAGTGGCCTCAAACGCCGGCCAGGCTACCGA # Right flank : AACCCCCCAGCCCACCCCGGGAGGGAACTTCCGCTTGGCCGGAACCGAACGCCGGTGACTATCCTCCTTACGTTGACGGGGACAACCCCGGCAAGGAACTCTGTCGACGGGTGCGGGGAGCACATGATCGAGGCCACCGGCCTGACGAAGCGCTACGGCGCGAAGACCGCCGTGCACGACCTCTCCTTCCAGGTGAGGCCCGGCACGGTGACGGGCTTCCTGGGCCCGAACGGCTCGGGCAAGTCCACGACGATGCGCATGATCGTCGGCCTGGACGAGCCCACCAGCGGCCATGTCACGATCGGCGGCCTCCCCTACCGCCGCGTCCCGAACGCCCCGCGCCAGGTCGGCGCCCTGCTCGACGCCAAGGCGGTGCACGGCGGCCGCTCGGCCCGCAACCACCTGCTCTGCCTCGCGCAGCTCTCCGGCATCCCGGCCCGCCGGGTGGACGAGGTGCTGGGCGTGGTGGGGCTCCAGGACGTGGCGCGCCACCGCTCGAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 2337848-2337635 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009802.1 Streptomyces sp. FR-008 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 2337847 24 95.8 40 G....................... TTCTTTTCGGGGTGCGGGCCGTTCCCCGGTCCCGGTGGGG 2337783 24 100.0 38 ........................ GTTTTGGCCGGGCTTCGCTGTGCCGTGCCGGTCACTGA 2337721 24 100.0 38 ........................ GTTTTGGCCGGGGTTCGTTGTGCCGTGCCGGTCACTGA 2337659 24 91.7 0 ..........G.....T....... | C [2337637] ========== ====== ====== ====== ======================== ======================================== ================== 4 24 96.9 39 TGGCCTCAAGCGCCGGCCGGGCTG # Left flank : CCTGGGAGGCGGCGCACCGGGCGGCGCGAGGAAAGGAGCCCTCCCCATGGCACTCGGCGTACAGGAGCGCGAGGAATTCCTCGCCGGCCGGCATGTGGCCGCCCTCGCGGTGGAGCGGGGGGACGGGCGGGCGCCGCTGACGGTGCCCCTCTGGTACTGGTACGTGCCCGGTGGGGAGGTCCGGGTGATCACGGGGGCCGACTCCGTCAAGGCCCGGTTCATCTCGGCCGCGGGGCGGTTCAGTCTGCTGGTGCAGCAGACGGCGCCCACGTATCTGTACGTCAGTGTGGACGGGCCTGTCGTGTCGGCCACGCCGACCACCGTGACCGACATGGTCACCGAGGCGTCGCGGTATCTCGACCCCGAGGGGGTCGGTGACTACGTGTCCGGGAGCGGGGTCACCGAGAGCGACTCGGCCGGGCTGCTCACTCTGGCCATGCGGCCCGAGCACTGGCTGTCCGCCGATCTCGGCTGGGGGTAGCGGGGCCGGGCCGCAGCCG # Right flank : TGTCGGGCGGCTCAGAGGTTCAGGGGGTGGCCGGTGGTGGCGTCGACGTGGGTGGGGACGGGGTCGTGGTGGGTGCCGACGGTGGGGGTGCCGGTGGGTTCGAAGAGGAGGATGGTGGCGCCGGTGGGGGTGTGGGGCTTGTGTGCGGTACCTCGGGGGACGGTGAAGACGGAGCCCTGGGGGAGGTGGACGGTGCGTTCTCCGGCGGGCTCGCGCAGGGAGATGTGGAGGTCGCCGGTGAGGACGAGGAAGAACTCGTCAGTGTCGTCGTGGGCGTGCCAGAGGTGTTCGCCCTCGACCTTGGCGACGCGGACGTCGTAGTCGTTGACGCGGGCGACGATGCGGGGGCTCCACAGGGCGTCGAAGGAGGCCAGGGCCTGGGCGAGGGCGACGGGGTCGTTGCTCATGGGGTCATCCTGGGGCGTTCCGCCGGGACGTCGTGAGTGCTAGGAATCGCACATGGCGAAAGAATCCTCGCAGGAGCGGCAAGGGGCGGAGCC # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGCCTCAAGCGCCGGCCGGGCTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 2986711-2986929 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009802.1 Streptomyces sp. FR-008 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================== ================== 2986711 27 100.0 34 ........................... CCGAACTTCCGGCTGGCGCTAGCCGAAGCTCGCC 2986772 27 100.0 34 ........................... CCGTGCTGATCTCGCGGGCGCGGTCCTCTTCGCC 2986833 27 96.3 40 ......................G.... CCTTCTCCCGGTCGCTGGGCTTGGGCTTCTTCTTCTGCTG 2986900 27 96.3 0 .................A......... | CCG [2986907] ========== ====== ====== ====== =========================== ======================================== ================== 4 27 98.2 36 CTGCTCCCCGCGCGTGCGGGGTTGGTC # Left flank : GCCACCGCGATACGGCTCGCCGCCGGGGGCGGGCGGTACGTGGACGACGGGCTCGCGATGAGCCTGCTCCGAGCGATGGACATGCCGCTCTCACCACGCGAGGTGCGGGTGCTGAGCAGGGCCGCGCAGGGGGACTCGGTGGCGGAGATCGCCCGGGGGTTGTGCCTGTCGCACGGGACCGTGCGGAACTACATCGCTTCGGCTACGCGGAAGGTGGGGGCGAGGAACCGGGTGGATGCGATTCGGATCAGCCGGGCGGCGGGGTGGGTTTGAGGGGGTGGGGTTGGGACTTGGCGGGTGGGGTTGGCTCGGGTGAGGGTGAGGAGTGGGTCGGGGTGTGAGTGGCTGGAAGGGGGGCGCGGGAGATCTGTCGGGTTCAATGGGGGCGGGTGCTGGGTGGACACCACGGAGGGGATATGAGGCATTCGCCCGCATTGCCGGAATCTTTGAAGCTTGCAGGAGAGAGTGACTGGGCTGAGTGAAACCCCAGGTCAGCGAGA # Right flank : TCCCTCCCGGCCCCCGAGCAAGCTCCCGGCAACCGCCGCTCCCCACCCACGCCTAGGTCGACGCGGTGCCCCGGCTCCCCGCCGCCGAAGGCTCCCCCAGCCCCGCCGCCAGTTCCCCGTACAAGGCCGACTCCCGAAGTAGCGAGGCATGGGTCCCCAGGTAAGGGGTCGCCCCGTCCAAGAGCAGGACGCGTTGCCCAGGTTCAGGCGCCGGAAAGTGGTGGCTCACCGTGATGACCGTGGCCGGGTGGGAAGCGAAGGCCAGCTCGGTCGCAGCCCGTGCACCTGCGTCCAGGTGGGCCGTGGGTTCGTCCAGAAGCAGCAATGGCGTAGGTGTCAGCCAAGCCCGGGCCAAAGCGATGCGGCGGCGTTCGGACGGGGTGAGGTGGTCCGGGCGGAGGGAGTGGGAGGGGTCAGCTGCGAGCGGGGCCAGGGCGAAGGTGTCGATGGCTTCCGTGATACGAGGGGCCGGGGCGTTCGAGGCGAGGTAGGTGAGGTTG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGTTGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGTTGGTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3408676-3409008 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009802.1 Streptomyces sp. FR-008 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3408676 28 92.9 33 A...C....................... GGCGCTGATGGGCGCTCCCGAGCCCGTCCTTGT 3408737 28 96.4 33 ...........A................ GGGGGAGGGCAACCCCCCGAGCGGCACCCCGGC 3408798 28 100.0 33 ............................ GCAGGTCAGGGGCTGGCTGGACGATCCGGACAC 3408859 28 100.0 33 ............................ GCCTCACGGCCACCGCTCGGCTTCACGATGCGC 3408920 28 100.0 33 ............................ GGCGACGGTGAAGGCGAAGCGCCCCACCCAGCG 3408981 28 89.3 0 ....................C...GC.. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 96.4 33 GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Left flank : GACACCGACGCCGACATCACCCGAGCCGTCGAAGCCGGCGCCATCGGCTACCTCCTGAAAGCCGAACGCCCCGAGGAACTCTTCACCGCCATCAGGGCTGCGGCCTCGGGGCGTACGGCGTTGTCCCCGCCTGTGGCGCAGAGGGTGATGACTCACTTGCGGAACCCGCAGCCGGAGTTGACCCCGAGGGAGCGGGACATTCTGCGGCACTTGACGCAAGGGCTGGGGAACCGGGAGATCGCCAGGGCGTTGTTCATCAGCGAGGCGACGGTGAAGACCCATCTGGGCCGGATTTACCAGAAGTTGGGGGTGGAGACACGGGCGGGGGCGGTGGCTGTGGGAAAGGAGCGGCGGTTGTTGGGGTGAGGGGGGCGGCAGGGGGTGGGTTCGTGGATTGGGGGTGGGGTGGGTGGGGGGTGCGTAGGTTGGGGGGTGAGTGGGAGGGTGCGGTGATGGGCAAAGGGATGGCAAAGGCCGTCCGAAGGTGCAGGTGGGGGAGG # Right flank : CCCGCCAAACCTGACAGGTGTTCCCCCACCCAACTCCCCGGCCGAACCGGACGACACCCATGTCACTGAATCGCAAGCGCCCCGGAGCCCGCAAAGGCAACACACCCACCCCGCCCCGCCCTGCTCGCGCGTCAGCCTCACCAAGGGCACCCCCGCGTCGCCGACCAAAACACCCCCGCCAGAACACCCCTAGAACCGGACAAAACGCCCCCACCAACAGCAGCCACGCCAACCACCCTCAACATCACGAACACACGATGGTCACGAAATCGCCACAGGCGGAGCATCCGGCACTCCCGTCATACCTCGCAGCCCCACACTGAGCGGACGCATCCGCATTCAGGGGGAATCATGAGACGCCAACTCGCCATCGCCGCAGCATCCTTCACCGCCGTACTCGGCCTCGCCGCCTGCGACACGGAGGTCACCTCCTCCCCCGACAAGCCCGCGGCCGCCGACGACGCGAAGCCCGGCAAGGAAGCCGACAAGGCCGAACAGGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGAGGGCGGGGGTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 4631100-4630888 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009802.1 Streptomyces sp. FR-008 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4631099 29 100.0 32 ............................. TGCTTCATCTTGACGCCGTTCCGGACCTTGTA 4631038 29 100.0 32 ............................. ACCTTCGACGTGATCACCCTGGTCGCGTTGGC 4630977 29 93.1 32 ....C..................A..... GAGGCCGCTCCGGTCGTCACGAACATCATCGA 4630916 29 86.2 0 ..............G......CAA..... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.8 32 GTGGTCCCCGCGCACGCGGGGGTGGCCCC # Left flank : GCAAGCCCACACCGCGCCGGCCTCTACGCCACCGGCAAAGTCCGGTACCAGGCGAACTGCTCGTGAGTGGGCATCCAGTGCTGGCCGCACCGGGAGCAGTACCAGCGCCAGTTGTCGGGGTCGTTGCGGAGGTAGGTCGTGTCCTTCCAGAGCCGGCCGTGGATGTCCGTGTGGCAGGCCCGGTCAGGACAGGGCGGGGGAACGGGCGTGGTGCGCGGGCGAGTTGTGGTCAGCATGGACGCCTCCGTGACTCGATGGGGTCAGGAGGGTGAAACGAGGGGGCTCGGGGCTGGGTGTGGGGCCGGGGCAAGGTGCGTTCGTTCGCGTGATGAATGGGGGATGAGATGCGCGGGGGGCCGAGGTCTGCTCCGTCGCCTCGGTCCGCTGCGTAGGATCTAGCGAGGGCTCAAGGCTAGGTGGGCATTTTGGGCCGAATGTCGCTATCGGTGAAGCTTGCAGAAACTGGGGCAGGGGCGCCGTAAACCTGCTGGTCAGGGAGA # Right flank : ACCCCGCCTCACCCCGACCCGGCGCCAAGCGCCGCCACCCGCCTTGCTCCCCCCACCCCCACCTCCTACCATGAATGCGCTTTCACAACGCGTGAGGCGGGTCGGTGGGCTCGGGTTCTGGATGGTCGGAGCGGGCGGGACGGGATGAGGGTAGGGGCGCGTGGGTGACGGGGTGGCGGGGACGCCGACGGTGTATGACGTGGCCGGGCGGGCGGGGGTGTCGATCGCGACCGTGTCGCGGGTGTACCGGAGTCCGGAGTCGGTGCGGGAGGCCACGCGGGAGAAGGTGCTCGTGGCCGCGCGGGAGCTGGGGTACGTGCCCAGTGGGAGTGCGCGCGGGCTGGCCAGCCGGTCGACGGGGGTGCTGGGGCTCTGCTTCCCCGACTACTCCGACCCGGACGCCGAGAGCGAGGCGGCCACGGTGGACGCCGACGACGACCACGCCTTCATGCTCTACTCCGACCAGATCATCCGGGGTATGGAGCGGGCCGCGCGACGGC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 5322440-5322591 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009802.1 Streptomyces sp. FR-008 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================== ================== 5322440 23 100.0 42 ....................... ATCTTGAACGGACGAGTCCGATCCGGACCTCGGCCCAAAACC 5322505 23 100.0 41 ....................... GTCCTGAACCGTCAGGTTCCCCCGGGCCCAAGCCCAAAGAT 5322569 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ========================================== ================== 3 23 100.0 42 CAGCCCGGCCGGCGCTTGAGGCC # Left flank : CCAGGGCCGCAGGGCATCCAGCGCCGCCGGAGCGGGCGGCGCACCCCCGGGCCCCCGCACCAGCCACTCGTTCCACAACGCACCCCCGGGCGCCACCACCGCCTCGAACCGCAACGCCGGCCAGAGCACCACCGGCCACCGCAACGCCTCACACTCCAGATCCCCCACGACCCGCCGCTCCACGCCCTCCGGCACCCCCAGCACCGACCGCAACAACCCGGCCCGCCGCCGCCCCCTGGGTGACCGCACCATCGCCTGCCACCGCCGGTTCGCCTCCCGCATGGCGCCGGCGTCCACCCCCAGCTCCCGCCGCGCCTCCTCCACCATCCCCGCCTGAAAATCAGCCATCCGCCGCAACAACACCAACTGAAACTCAAGCGACCCGAACGAACTGGTCCCACCGACAGCAGCGCACATCTCCCCATTGTCCGCAGCCCCCACCCCACCGCGAAAAACAGCGGGCACGACCGCCGAGAGGCAACTGGCCGACCGCCGAAAAA # Right flank : CACCCCACCGCACCCCCTGCCGGGGAGGGAAGACTCACTCCCCGGCCATCCTCCGCAACATCCCCCGGAGGACCTCCCGCTCCTCCCGGGAGAACCCGGCAAGCGGTTCCCGAGCAAAATCAAGGGAGTCCCGCAGCACCCGCGCGACCTCACGCCCCTCCGCGGTCAGAGCGGCCACCTTGATCCGCCGGTCCCCGGGATCGGCCTGCCGCTCGACCAGCCCCCGCAGGGCGAGCCGGTCCACGATCCCGGTGACGTTCGACGGCTCGCACTTGAGCCGCCGGGCGATCTGCCGCATGGGCATCGCCTCAAGGGACAGCAGACCCAGTACACGCGCCTGCGCGCCGGTGAGTGCCTGCTCGGCGGCGGCCCGGTCGTACTCCTCGTGGTACCGCGCCACGACAGCGCCGATCAGCTCGACGACTTCGAGGGTCAAGGGGTCCGTGCGGGTGGCCATGGGTCCCAGGATAGCCGGTTGCTTGACAACATGAAATATTCAG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //