Array 1 274296-275101 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTIP01000001.1 Listeria monocytogenes strain FSL L7-0624 NODE_1_length_1005500_cov_28.838931, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 274296 29 100.0 36 ............................. ATTTTTTTGTTAATATGTTACGTCCCGCAATCCCTC 274361 29 100.0 36 ............................. CTTTAACCAAAAACAGACTAAAGGACTGGGAAGAAC 274426 29 100.0 36 ............................. TTTGTATTTGCGTTGAAAATAAAGTTCAAACAATCG 274491 29 100.0 36 ............................. AATGTTTTCCGAAGCGTGTGAGTGCCTAAAGCTGGC 274556 29 100.0 36 ............................. ATTTTTGTAGATAATAGAGAGTCGGTAACGGAACTA 274621 29 100.0 36 ............................. TCAACTCTTCAATTAATAGCTCTAGCTCTAAAATGC 274686 29 100.0 36 ............................. AGCTTTATTCACAGTTATTGAACGTTTGTTGAAATT 274751 29 100.0 36 ............................. TTTAATTAGCTAACACCATAACAAAAACCCACCCCA 274816 29 100.0 35 ............................. CAGGTTACTGAGAATGGCTTTACAAGGCGGTTGGT 274880 29 96.6 35 ..............A.............. TGGGAAAGAATAAGATTACCAGTCATTGCCGAAAA 274944 29 96.6 34 ..............A.............. CTCCACTTTTTTGGATCTTTCGCTGTCCACATCA 275007 29 93.1 37 C.............A.............. GAAAAAGCACTTTTCAATACTCGTTCGTTTTCTTTTT 275073 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 13 29 97.6 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTGATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGGAATAGGAATTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTCCACCACCATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATAAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCACT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 291928-293970 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTIP01000001.1 Listeria monocytogenes strain FSL L7-0624 NODE_1_length_1005500_cov_28.838931, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 291928 29 100.0 35 ............................. ACAAACAACGAAGCGCTAGAAGCCGAAGCAATAAA 291992 29 100.0 36 ............................. CAATTAGTGTCACCTGTACATGGTGTTTGGAGTATT 292057 29 100.0 36 ............................. AAAAGACTCAATCGCTTTATTCCATGACATATTAGC 292122 29 100.0 37 ............................. TCAACTGCTTAAAGAACCTCTTTGCGAAAGATGTTTA 292188 29 100.0 36 ............................. ACGGATTGTACAAAGTGTTTGGTGACAATAATGCGC 292253 29 100.0 39 ............................. GATAAATCAATGGGCATAGAAATTAACGGCAAACTTCCA 292321 29 96.6 34 A............................ GATACCTCTCTTGACATGCAATGGCATGCTTCAC 292384 29 100.0 36 ............................. TTTCTTAACGAAGCCTACCTAGTTAAATTTAAAAAC 292449 29 100.0 37 ............................. AAAACTGGCAAAACGTTTCCTCTGGCAATGTTTCAAA 292515 29 100.0 37 ............................. TGTTGTTTGCGATTTATGGTTATCTTGTAGACCCGAC 292581 29 100.0 35 ............................. AAGTAAAGCCCTTGATGCAACCTATCAGTTTGATC 292645 29 100.0 37 ............................. GAGGGTATTAGACAAGTTGTCACTAAAATAGAAGAAA 292711 29 100.0 36 ............................. AGAGGTTATGGGTGGTGGTTAGATAACATTAAAGAT 292776 29 100.0 36 ............................. TGAATTGAGCTTTTGTTTTCGCTACGTCCTGTCCGC 292841 29 100.0 36 ............................. GAAGATTCGGTTATTATCGTGAACTATGAGCGTGCT 292906 29 100.0 35 ............................. ACAATTATCCCAATTACAGGTAACATTGCAGTGAC 292970 29 100.0 35 ............................. AAAATAGAAAATGAATCAACTGCCGATATTTTCGC 293034 29 100.0 38 ............................. CAAACTATGAAATACGCGGTTGATTTTGGCTTTAATGA 293101 29 100.0 35 ............................. GAAGGTAAGAATGTTCTGTTGGACTTGCCGCGCGG 293165 29 100.0 37 ............................. GATATGTGAAATTTTCAAATCGATTTCTCGTTTTAAT 293231 29 100.0 34 ............................. ATTTTCACTACTAGGATAGACGTTGATTCAATTG 293294 29 100.0 36 ............................. TGACTTCCAAAAATAGCAGAGATTGCCGCCGCTTTT 293359 29 100.0 36 ............................. AACCTTCGATTTCATTCACGATTATTACGAAAAAGA 293424 29 100.0 35 ............................. CGAGTTACTGGCAAAGGTCAAATATACCTATTAAA 293488 29 100.0 35 ............................. ATTATTTCTAGAGAGCGCTGGGAACAATACTTAAC 293552 29 100.0 36 ............................. TACGTATTTCAAGTGACCAAAAAAGAGTGCTTGGAC 293617 29 100.0 34 ............................. AATTTCTAATCCTAAATTATCCTTATTTTCCTCA 293680 29 100.0 34 ............................. TCGCTAACATTTCAGCCCACTCATCAGCCTCAGC 293743 29 100.0 37 ............................. CTCGCTCTAGCAATTGCTCATCAAAAATATAACTCCA 293809 29 100.0 36 ............................. TTCAGTAACATGTTCGCTGTAATCACGAATCTGAAA 293874 29 100.0 38 ............................. AAGTCCGAGCGTTTTCGCTAACGCAGCTGATACATCCG 293941 29 93.1 0 .......................A....C | C [293964] ========== ====== ====== ====== ============================= ======================================= ================== 32 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTAAAGTTTTTAAGCGAAAATCTAAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCTGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCCCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTTGCAAATAACGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //