Array 1 187055-188062 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMNK01000015.1 Nonomuraea glycinis strain CGMCC 4.7430 sequence15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 187055 29 100.0 35 ............................. GTACGGTCAGTAAACAAACAACCGACCCGACTCGC 187119 29 100.0 39 ............................. ACGACGTCAAGCGGGAGTTGAACGACGTCATCCTGACCG 187187 29 100.0 36 ............................. GGGATCACCAGTATTTGACATGTGCTGAACGTACCA 187252 29 100.0 34 ............................. ATGGAAGGCCAGCAGGTCGGTTCCATAGTCGAGG 187315 29 96.6 34 ..T.......................... ACGACCTGCCCGACGACGTCGTCACCTACGTCCG 187378 29 100.0 36 ............................. ACGATGAGGCGTGTGCCGAACTAGCAGGATTGGTCA 187443 29 100.0 36 ............................. TCGGGTTCGACCCGGAGAAGCGCCGCCCGGGCGGGG 187508 29 100.0 37 ............................. AGGGCCGCGGCGCCGGCAAGGACTCCGGCGGCCGCGT 187574 29 100.0 34 ............................. GTGCGCAGCATCATGCCCAGCGCCCGCGCCGAAG 187637 29 100.0 38 ............................. ACGGCGACGGCGTGCTCGACGGCGTGCACCGTGTGGGA 187704 29 100.0 38 ............................. GTGCCGGTGAAGCTGACCACGTGCAACCACGCCTGCAG 187771 29 100.0 34 ............................. CCGCCTGGGTCGGCGGCCCCGCCGGTCAACGCCA 187834 29 96.6 37 ..T.......................... TTGGTGTCTGTGGTGATCGAGCAGGCGGTGGAGGCGA 187900 29 100.0 38 ............................. GGGACGACCCCATCCACCTGGGCGAGATCATCCCCGAA 187967 29 100.0 37 ............................. GGTCTAGAGGCATGCTGGGTCTCGAGGCCCCCTAGCG 188033 29 100.0 0 ............................. | A [188043] ========== ====== ====== ====== ============================= ======================================= ================== 16 29 99.6 36 GCCGCTCATCACCCTGGAGGGATCGCAAC # Left flank : GTCCAAGGGGCGCGCTGTCGTGCAAGGCACAGTGACAGAGGATAGGCAACTTGGTGACGACGATGGCTGCGACTCCTCCGAGGAAGCGGTGTTCGGTAGGGTGAGGCGGTCGATCTTCGTCGGGTTGCCTGGCAGTGGGCCTTGGCGAATCGCCTTCCGGACGTGGCACTCCCGTCTGGCCGGGTCGTCGCTGAGCGGTTCGCGCGGAGTGCTTGATGGGGCCGCTGGATTAAGCGGCGGGGGCTGGAGGGGAAGTTGACGGAGCAGGATGCTTCCATTGCTGTCTGAGCGCAGTGAATTCTGAGAAGGTTCTTACGGCCGTCCGCATGATGGTGAGTAGCTGCTGTCTCGGGGAGGAAATGAAGGGCATTGCTAACTCATCTGCGGTTCGAGGGACGGTTGAAGCTCTGACCTGGGCTTCTGCACTACCGCCAGACTGCTGCAGAATAGCGCGATCTACATGCCATCTCACAGCTCTTGACCTGCGGCTTTACCTTGGG # Right flank : CACAGGGCCACGTCCCGTTGCGTGGCGTAAGTGGGTGTCCGCGTGAGGCGCTGCCAGTGCGACTATGCCGTCACTAGTTCCGTCTGTACTTCCTTCTGCTGATCGGTGCCAGGCATGGTGAGCGGCGCCATAGAAGGCCGACTGGCAGATCCGCCGCCATGCTGGATCGTGACCCATTGAAGGCCAACCCGCGCAGCCTGGGATACGTCTTATCCGCGTCCCCCTAGCCGCATGGAGCGCTCCCGTGTCCCAGCCGCCTTACACAACCCGTACCAGATGCGCCGCGCCTCGGGCGCCCTGCCTGTGGTGTTGATCGTTGTCCTGCCAGTGGCGGCGATCGTCGCGATTGCCGTCTTCGCCGTAGTGATCCTCACCCAGCCGCAGGCTGGTGACGGCCAGTCGACCTCTGGCACTGGCCAGGTTCAGGAGCAACCTGCGGGCGATGACCAGCCGCCGGCCGACCGGTCGGAAGCTGCGGTGCGCGCGGCGGCGACGGACTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCTCATCACCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.10,-3.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 190282-190775 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMNK01000015.1 Nonomuraea glycinis strain CGMCC 4.7430 sequence15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 190282 29 96.6 40 ...............A............. GCGCGGACCGAAGGTGAACTTCTTCGGCAGGCCACGGAGG 190351 29 96.6 38 ...............A............. CCTTTGCCGAGTCGGCCATGCATTTACGCGTCGAAACG 190418 29 100.0 36 ............................. AGGGGCAGTCCATCAACAAGGGCTTTTCCTCCGAGG 190483 29 100.0 37 ............................. TTCTCCCGCGTGGTGCGGGTCGGCATCGGCTCGTCGG 190549 29 100.0 35 ............................. AAGGCCGACACGTAGTTGAACAACCCGAAGTGGAT 190613 29 100.0 39 ............................. GTGACGCCCATTCAGGTTTATGGGCGGACCATCGCGCAC 190681 29 100.0 37 ............................. TACGGCACGAGCGCGGGGACGTGGCCGGGCTGCTCGT 190747 29 93.1 0 ..T........................G. | ========== ====== ====== ====== ============================= ======================================== ================== 8 29 98.3 38 GCCGCTCATCACCCTGGAGGGATCGCAAC # Left flank : ACTCGTCCAGGCCGGTGAACAAAGCAGCGGAGCCGCTGTAGCAGAGGTCTGTCACTCCAAGACATTCTCGTCACAGGAATTCAACTTGTATGGAATTACTATCGCACTCAAGCTAGTGGGTGGAACCGAATGCCGCCGGTGATCGACGTCGGTGAGCCGTGTACGAGGGTTCAAGGCGCTGCGCGAATGGAGTACGGCCTGAATCTTCCCGTCTGACCCGGGTCATTGCTGAGCAGTTCGCGCGGAGTGCTCGATGGTCCGCTGGATTAAGCAGCGGGGGCTGAAGGGAAAGTCGGTGGCTTGGGAGGTTCTTCCGGTCGGCCTCATGATGGTGGGTAGCTGCTATCACGGAGAGGAAGTGAAGGACATGGCTTATTCATCTGCGGTCCGAGGGATGGTTGAAGCTCTGACCTGGGCTTCTGCACTACCGTCGGACTGCTGCAGAATAGCGCGATCTGTATACCATCTCACAGCTCTTGACCTGCGGCTTTACCTTGGGG # Right flank : CACGTAGACCCGGCCGACGACGGCCTTGGGGATGCTGGGCCGCTCGTACCCTGGCCGACAGATAAGGCGAGCCTTCAAGATTTGTGGCGTGTTCCTTGACCCTTCGGAACTTCCTGGTAGAGAACGAGATCTAGGTCATCTGCGTTTACCGGTGGTAGGGAGCGTCCGTGGCCGGGCAACACCTCAGTCCTCTTCGTCTTCTGGTTCTTCCCGGTGTTTTCGTTGGCGGTGAACCATTCATAGGATCGACCACGCGGGTCGGGCGGCATCGGCATCGACAAGTTGGCTATCATTCCCAATGGCCGGACCCGAGGATAATGGACGGGAAGTTCGGGCCGTCCGGTGGTTGTGGCCAGGAACACATCTCGTATCTCCTTGTGAGGCGTGTCCTGCGTCGATTTCTCGAATTCTTCGAGCGCCATTTTCATAATCTCTGATGGGTCCGGCGTAGGCGGCTCGGCGGTAAGGCTCCGGTAGTAGGTGGCCCAGTCCTTGTTACC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCTCATCACCCTGGAGGGATCGCAAC # Alternate repeat : GCCGCTCATCACCCTAGAGGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.10,-3.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 3 204020-204832 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMNK01000015.1 Nonomuraea glycinis strain CGMCC 4.7430 sequence15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 204020 29 100.0 38 ............................. ATGGGGTGAACCGGCCGCCGCCCCGCACTCACGGCCAA 204087 29 100.0 35 ............................. GTGACGTTGACCGTCCGCAAGACCCTCAAGATCAA 204151 29 100.0 36 ............................. CCGAAGACAAGCGGCCCGTCGACGGCGAAGGCCAGC 204216 29 100.0 41 ............................. CCGTTGTGCCGGTGCGCGACCAACACCTGTCCGGCCACCAG 204286 29 100.0 34 ............................. CGTGATAGGTCGCGTTGGTAGAAGTGATCACAGA 204349 29 100.0 35 ............................. GATCGTGTGCGACCGGAACTCCGGCAGTCCCAGGA 204413 29 100.0 36 ............................. TGCCATTTCCACGATTCCTGTCCCGGAATCACCCCA 204478 29 100.0 35 ............................. GCCTTGTTCGGCGTGGTCACGATCAGCGCGTATGT 204542 29 100.0 36 ............................. ACGGATTGACCGTTCACCAGCCGGGGCAGCCCGGGA 204607 29 100.0 35 ............................. GTGATCGACGCGGTGCTGCCGCCGACCATGATCGC 204671 29 75.9 37 .C....G.....TT..C........T.G. TCGTCCATCTGTACCAAGCAGAAGGGATAGCACAGAT 204737 29 72.4 37 .CC......TC..G....A...C.....G GCCTGCGGGACCGCAGCGGCAGCAGACTCGTCGATGG 204803 28 75.9 0 ..C.T.T.....G...........A.G.- | AC [204828] Deletion [204831] ========== ====== ====== ====== ============================= ========================================= ================== 13 29 94.2 36 GTTGCTCATCACCCTGGAGGGATCGCAAC # Left flank : CGCACTCGGCTCACGGCCTCGAAAGAGAAGCCGCGCAAGAGACGCTGCGTCAACTCACCACGCCTGGCCGTACGTGCCGTCGCGCCTACGAGGCTGTTATCGCCGGCATCTGCGCAGCCGGACACGGGGACTGCGCAGACCCTGTCGGTCTCGCTATGGCATCTATGGACCTCGCGCGCCCTTCCGCGCGACGGCTAGTCCGAACGCTGGTCTCTCTGGTCGCCGCCGCAGGTCCGGACTGGTCTGAGGCGCGATGTTCGATCGATTCGATCGTTGCCACGCGCGTTCACCGCGAACACGTCTTAATCCTCACCGGGCTTGGACCGGACGAGGCTGCCCTCGCCCAGGTGGCTGTCCGGAGCTAGAGTGCCGTTCATACTGCGGAGGATCCAGTGACGACACCCCTTCTGACCTGGCCTCCTGCACTACCGGCGGACTGCTGCAAAATACATGCTCGGAGCCAGCTGAATCATTCCTTTGACCTGCAGCTTTACCTTGGC # Right flank : ACGAAGCGTAGACCTTGGCTGCCTCCAGCCATATCGGTATCACTTTGGCGGTAACTCAGAAATCGTCAGGGTCTGCTGCTACTACTAGGTCCACGTTCGACACGGACAATGAGGAGAGGTTTAGTGCGGTTTCGTGTTGATGTCACCCCAGATGTACCGGTTATGCCCTGGGGAGATGTTCACGGTCCGGCCAGGGCAGTGGTTTATGGCCTGATTGATGGTCAGGACGCAGGGGTGGCTGAAGAGCTTCACGATGTCGGCTGGCAGGGCAGTTCTCTTCGGCCGGTGGGGGTTTCTCCACCGCTGTTTCCAGGGGCACCACCGCGTCCACGCATGTATTCGACCTCGCCGAATGGCGTGATCTCGATGGGCTCTCCGGTGCCCCGGATCGCGGCGTGCCTGCTGGCAGCGCTGGCGGGACGCGGTGAGATCCGGTGGGGATCGGTGGTTCTGTCGGTCAAAGGTATCCAATTGGATAGCGTCGTGAGTCATTCAGACGG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCTCATCACCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.10,-3.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 212972-213260 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMNK01000015.1 Nonomuraea glycinis strain CGMCC 4.7430 sequence15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 212972 30 100.0 34 .............................. GACGACGTCACGGGGATGACCACGCCGGGTATCA 213036 30 100.0 35 .............................. AACACCAGGTGTTCAAGGGTCATGCCCTCGACGAC 213101 30 100.0 34 .............................. AGAATCTCCTGCTCGGTGGCCAGAGTTTCGAGCA 213165 30 100.0 36 .............................. CAGAACCCTCGCCATCAGTGGCAGTGTGAATACGAG 213231 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 100.0 37 GGCCGCTCATCACCCTGGAGGGATCGCAAC # Left flank : TGGCCACGACTGTCTACCATCGGGCGCTACGTCGGAAAGTCTCGTACGAGGAACTCATCCACCTCGAAGCCCTCAAACTGGTGCGGCTCTGCCTTGAGGACGCCGCATACAAGCCGTTCCGGCCCTGGTGGTGATCATGTTCGTCATCGTCGTCTACGACACCCTTGCCGAACGTAATCCCGCAGTCCTGCGAACCTGCCGCCAGTACCTGCACTGGGTTCAACGGAGCGTCTTCCAGGGCGAGCTCTCCACCGCGCAACACCGTAAGTTCATCAGTGCCATCAAAGGCCAGATCGACCCGAGCTACGACAGCATCCTCATCTACCGTGCCCAGGGTCCCCACAACATCCAGACCGACCTCATCGGCCAGGCCCTCGGTAACACCGATCCCGTCCTGTGACTACCCTTCTGACCTGGGCATCTGCACTACCGGCGGACTGCTGCAAAACACCTCACGTGGAAGCGCCATCACATGCCTCTGACCTGCGGCTTTACTCTCG # Right flank : CGCATCGCATCAGGTCACGTCCACGGATGTGGTGTATGAATCGATCTTCGCGTGATCCTGTTTCTGCAGGTTAAGCGGTGAGTGTCTGCGGGAGCGGGTTGTGGGCCGGTGTGTCGCCGGTGATGAGCCGGACGCGGGCTTTGGCGAGGATGTCCAGGCCCATGTAGCGGCGGGCTTCGGTCCATTCGTCGGTCTGTTCGGCCAGTACCGCGCCGACCAGCCGGATGATCGCGGCGCGGTCGGGGAAGATGCCGACCACGTCGGTGCGGCGGCGGATCTCCTTGTTCAGCCGTTCTTGGGGGTTGTTGGACCAGATTTGGCGCCAGGTCTCGCGGGGGAAGGTGGCGAAGGCGAGCAGGTCTTCGCGGGCGGCGTCGAGATGTTCGCACGCGGCCGGGTATTTGGCTTCCAGGGCGTCGATGACCCAGGCATGCTGGGTGCGGACGGCGTCGGTGGTGGGCTGGTCGAAGATGGTGCGCACCAGCGTGGCCACCCACGGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCCGCTCATCACCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.10,-3.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 5 214720-215786 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMNK01000015.1 Nonomuraea glycinis strain CGMCC 4.7430 sequence15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 214720 29 100.0 35 ............................. ACGATCAGGTTGCCGGGATTCTGCTTGGCGATCTG 214784 29 100.0 38 ............................. CTGACGGGGAACCAGAGTTCGGGGTCGTGGCCCCGGCA 214851 29 100.0 37 ............................. ACTTAGGCGAGCTGCCAGCCACCACGGCGTGGAGCCC 214917 29 100.0 34 ............................. GGTTGTGGCGGCGGCTGGACGAGGACCGGCTGAC 214980 29 100.0 39 ............................. GTCGGCTCCATGGTGGCGCTCATCGGGCACGCTCCTCGG 215048 29 100.0 39 ............................. GTCGGCTCCATGGTGGCGCTCATCGGGCACGCTCCTCGG 215116 29 100.0 36 ............................. AGGTCAGGAAGGTGGGCTACTCGCTGCCCATCTCCG 215181 29 100.0 38 ............................. CTGATGCCCGCCTCCGAGAACAGCGTGTTCAGCTTGGT 215248 29 100.0 37 ............................. GGGCGTGCCCGCACGGCAAGGTGTTCGAGGGCCGCGG 215314 29 100.0 34 ............................. TCCCACACGTCGCCGGGCTGCGGCGGCCAGTGCC 215377 29 100.0 34 ............................. CCAGACGGATGGGAACGAGGGCCATAACGTGCCA 215440 29 100.0 34 ............................. GCCTTGACCGGCTTGCACTCCGGGCCGCAGGACG 215503 29 100.0 35 ............................. GCGTACACGCCGATCAGGTCCCGCCCCATGCCCCA 215567 29 100.0 37 ............................. GCCATGTCCCACATGGTCTGCCAATTAGGCTTGACAC 215633 29 100.0 35 ............................. GCGTGCTCCGTGCTGGCCCACTGGTGGTGGTGGCG 215697 29 96.6 32 .......G..................... CTGTGGTGCTTCGGCTCGATGCGCCTGTTCCT 215758 29 93.1 0 ...........T...........T..... | ========== ====== ====== ====== ============================= ======================================= ================== 17 29 99.4 36 GCCGCTCATCACCCTGGAGGGATCGCAAC # Left flank : GGGTCGAGACCCCGAGGAGATAGGAGGTGGCGACCACGCTGATCAGCGCCTGCTCGGCTCGACGGCGGCGCTCCAGCAGCCAGTCCGGGTAGTAGGAGCCAGTGCGGAGCTTGGGGATGGCGAGGTCGATGGTGCCGGTGCGGGTGTCCCACTCACGGTTGCGGTAGCCGTTGCGGGAGTTGGTCCGCTCGCTGCTGCGCTCGCCGTAGCCGGCCCCGCACAGGCTGTCGGCCTCGGCCGACATCAACGTCTCGGCCATGGTCTTCACCATGGATCGCAACATGTCAGGGTCGCCGGTCTCGATCTGCTGCGCCAGCCACCGGGCAGGCGTCACACTGTTGTCTGCGGTCATCGCCGTTCTCCTTCTTGGAATCGTTGCTACGAAGGATCACGCGATGACCGTTCTCATTTCACGGCGCCACACCTGCTGACCAGGTCAAACTCGTACACCACTTCCGTGGACGCAACCTCGCATCAACTGCCCTAGGCGCAGCCTGGGG # Right flank : CGCGATTTCGGTTGCGGCCGCTGTTGGTCGGTGATCATGAAGCGGTTCCTGGGGTGGGCGTACTAAAGCATGCGTGGCGCGTTTCGAGGGGCGTTCAGTTGCTGCAGGACAGTTTGGGTTTCGGGTGACGGGGTGGCGCCGAGGGCGTTGAGGCGGGTTTTGAGGTGGCGGGCGTGTTGGCGGGCTTCGTCGGTGCGGCCGAGGGTGGTCAGGAGGCGGATGGCGGATCGGGTGGCGCTTTCCATATCGGGGTCGAGGGCGCAGGCCTGGTCGTAGGTCTCCAGGGCGCGTTCGTGGTGGCCGGCGCGTTCGTGGAGGGCGCCGAGTTGGAGGAGGGCCTTGACGCTGGCGATGGTGAGGGGCCAGCGGTGGTCCTGGTCGAGCCAGTCGTATTTGAGGCCTCGGGTGAGTGGTCCGCGGCATAGGGTTGCGGCGGTTTCCAGGGCGGCGAGTTTGGCCTGTTCGGTGGTGGCGGTGCGGGCGTCGGCGAGGGCTTGGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCTCATCACCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.10,-3.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 6 249405-248829 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMNK01000015.1 Nonomuraea glycinis strain CGMCC 4.7430 sequence15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249404 29 100.0 32 ............................. GCGATCAGCTTTGCCATAGACGTGGCCTGGGG 249343 29 93.1 32 ..........................T.C CACGCCCGTGGCGGAGTCCGCCTCCTCCGTGA 249282 29 100.0 32 ............................. ACGTGGCAGAGCGAGCGAGATGCCGCAGAGCA 249221 29 100.0 32 ............................. TAGTCGTACATGCGTGCGTTGTTGGGGAGGCT 249160 29 96.6 32 ............................T ATGGGCCCGGTCGCGGTGGTTCGTGACGGGGC 249099 29 93.1 32 ..............T.............C GAGGCTGAGGTCTACCGGCTGCTCAAGAGCTA 249038 29 100.0 32 ............................. TCGCTGCGGACAAGGGGGACGAGGTACACGAC 248977 29 96.6 32 ............................C ATGGCGGAGATTTGGACGGTCTGGGATGCCGA 248916 29 96.6 32 ..............T.............. CCCGACATGCCACCTGGATCGGGGCCGGGCGT 248855 27 86.2 0 .......--..............T....A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.2 32 GTCGGCCCCGCGCCCGCGGGGATGGTCCG # Left flank : CCGGCGATCAGCTTTGCCATAGACGTGGCCTGGG # Right flank : TGGCTGCTCGGCGCGTCCATCCGTACGGTGTCGTCGACCCCGAACGATTGACCGTGGGAGGCGCGCCGAGATCTACAGCCTCGGGATTTCGCCACACTCGAACAGTAACTCGCGGCGATTGCCCTTACTGCTGACGTCCCAGACGATCACATCGATGGCAGAAGCTACCAATAGCCGGGCTCCTCGCGGTCTGATCGGTAGAGTTGTGCAGCGTGTCAGCGTCTTCGGTTCGTGTGCGTTTTGCTCCTTCTCCTACTGGGATGTTCCATGTGGGTGGGGCGCGGTCGGCTCTGTACAACTGGGCGGTGGCGCGACAATCCGGGGGCACGTTCGTGCTCCGCATCGAGGACACCGACGCGGCCCGTAACCGGCCGGAGTGGACCCAGGGCATCATCGACGCCTTGGCGGCGATTGGGATCAACGCCGCTGATCCGGCTTTTGAAGGGCCGTACTTCCAGTCTGAGAACGCCAAGCGACACAGGGAAGCGGCCCTGCGGCTG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCCGCGGGGATGGTCCG # Alternate repeat : GTCGGCCCCGCGCCTGCGGGGATGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 317126-316561 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMNK01000006.1 Nonomuraea glycinis strain CGMCC 4.7430 sequence06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================== ================== 317125 28 100.0 38 ............................ GTCCAGGGCTTGGGGAGGCGGAGGGTGTGGTTGCGGGC 317059 28 100.0 35 ............................ ATGGTGGCGGGTGACTTCTCCTCTTCGGCCAGGGC 316996 28 100.0 37 ............................ TGGATGGCGTAGTCGTACGGGCTGTAGGTTGGCGCGC 316931 28 100.0 41 ............................ GTGTACTCCTGGGCGTTGTACTCGGCGCGGCAGGCCCGGGC 316862 28 100.0 46 ............................ CTCCTTCAGCTGAAGCTCACCCCGGGCGCTTCCGCCCTCATCGCGC 316788 28 96.4 38 ....................A....... ATCACGGCTGGCGCTATCGCGGCCAACGCGATCACCGT 316722 28 96.4 37 ......................G..... GCTCATCCTGCGGCGGTAGCCAGCCCTTGCGAGCGGT 316657 28 96.4 41 ...........T................ CCGACGCCTTGGCCGTAGCGTAGCCGTAGCCGAGCTGTTGT 316588 28 89.3 0 .......A...........A..T..... | ========== ====== ====== ====== ============================ ============================================== ================== 9 28 97.6 39 CCTCATCGCCCCTACGAGGGGTCTCAAC # Left flank : AGTCGGTGGCCGGCCCTGGTCAAGCCGTTGCATACGCGCAATCGCTGCGCAACGCGGTCCGCGCACAGCTCGAAAGCACACCAGCCGAGCGGGTACACCTCTTCCTCGCCGGCCCTGGAGGCCTCGCCCTGCTGCTTGGCCACCGGTGGAACCGCGTCGCGCCCACCACCGTGTACGAGGATCTTGGCTCAGGCCACGGCTATACCGCGGCGTTCTCCATCGACGCATAGACGGTCAAACCACAGAAGGCCAAGGGCGCTGAAGCCATAGACAGCGAGGGCAACGGTGTTGTGTTGATCAAGAAGCTGCCCCTCTTCTTGCCTCGCCCAACTCAGATGCACGTTGGTCTTTGCTCCACCCTCTAGAGAGCGCGAAGCACAAAATGATCAAGGATATTGCAGCAAACCTCCCGGCTTTTCTGCACGACCGGAGGTTCACTGCAAACCCTCCCCGCTTGACGTACCTGAAAGGGCTTCTGAGCTGTGACTTTACGTTAGGGC # Right flank : AAGTTCCCGAGCTCCTCCGCGTACCCCTGCACGATCTTGTCCTCATCGAGGGCTCGGGCCGCTGATATTGGGGGCGGTTCTGCGTCTGCCACCCCTCGGTGTCGGCCAACCCCCTGGAAAGCCCAGGTGGGGATCTGCCCAGCGGCTTGGCGATCGCTCAGGCTTTTAAGGTCTGCTGCAACCATCCTTGATCATCGTATGGCGTGGTCTCTAGAGGATGTCGGTCGGAGCGGGTTAGCCAGATTACCGGCCGGTTCGTCGGTCAGGTGCAAGCCGAGCTGGCCGTACACCTCGCCCTTGTCCTTCGGATTCGTGCTCCTGGACGCACATACGTTGCAGCCGACTGACTACGACCGTGGTCGGATGGCAGCGGCTTCGGTCCCGTCTACGGTGGTAGGCGTCATGCCTTCTCCGGACCGCTCCGCCCTCGGCCGGCTGCTCCGGGACGCCCACCCCGTCGGCCGGCTGCTCCGTGATGCCCGGCTCGCCGTCGGGCTGGC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCATCGCCCCTACGAGGGGTCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 319801-318916 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMNK01000006.1 Nonomuraea glycinis strain CGMCC 4.7430 sequence06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 319800 30 100.0 38 .............................. CGAGGCACCTGCTTCGTCACGACCAGCCCTTCCCGCTC 319732 30 100.0 36 .............................. TTGATGTGGATAGGGAGAACGGCGGGCACGGCGAGG 319666 30 100.0 37 .............................. CACTCGCCTTCCGCGCCCGCCACGAGAAGGACATCCG 319599 30 100.0 35 .............................. GCATGATCGAGGCCGAGTCTGCGGAGCTGATGGAG 319534 30 100.0 34 .............................. ACCATCTTCATGAAGGCGATTCGCTGGAATCTGA 319470 30 100.0 36 .............................. CCGGACAGGCCGAACGACTGGGCGCTGTAGCCGGTC 319404 30 100.0 33 .............................. GACTCCGTTTCGACGCTGCCCCACATGGACATC 319341 30 100.0 37 .............................. GACCTGACCGGCTCGCGCGGCGCGGCGGCCGTACCGG 319274 30 96.7 34 ...........................T.. CTCATGATCAGTCCTTTCGCTACTTGACGAGGAG 319210 30 100.0 35 .............................. GTGGAGACGGAGCGGAAGCTCGCGACCATCAGAGG 319145 30 96.7 35 ...............G.............. GTGCACGTGGACGACCATGGCGGTTGGTCGTACAC 319080 30 100.0 37 .............................. GCGTCCGGATTTCGGCGCTGGGCAAGTTTTGTGCCAT 319013 30 93.3 38 ........................TC.... ATCCGGATGTCGATGCCGCCCGTGATGTCCAGCGTCAC 318945 30 83.3 0 ......G.A..T....T............A | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 97.9 36 GTCCTCATCGCCCCTACGAGGGGTCTCAAC # Left flank : CGTCGCCTACGACGAACTTCTTTACCTCGAGGCTCTGCAGCTCACCCGCCGCTGCCTGGAAGGCGTCCCGTACAAGCCGTTCAAGATTTGGTGGTGACGCGACATGTACGTCGTGGTCGTCTACGACACCCTCGCCATACGGAACGCCGCGATCTTGAGGCTGTGCCGACAGTACCTGCACCACGTGCAGCGCAGCGTCTTCGAAGGCAGCCTCAGCCCGGCGCAGCTACGACGTTTCCATCATCAGGTGAAGGAGGTGATCGACGCTGGGTACGACAGCGTGCTGGTCTTCACCTTTCCCCCTGGGACGACACCTGAGCGGCAGGAGTGGGGGGTCGGCCAGCCCGCTCCGAGCGACATCCTCTAGAGACCACGACCATATGATGATCAAGGATTTTTGCAGCAGACCTCCCGGCTCGCCTGCACGACCGGAGGTTCACTGCAAAACATGCCCGATAAGCCAAGCTAAAGAGGCTCCTGAGCTGTGGCTTTACCTTGGG # Right flank : TGGACCTGCCGCTCAGCGTCACCCAGTTCGCCTCAGGAGGCCCAATGACCGTACTGCGACCCGCCACCGGCCCCAACTCTCGCAGCGGCGTTCGCCGCTCCGGCGACCGTTACCAGGACCTGATCGGGTGGAGCGCCGCCATGCGCGTCATGCACCCCACGAACGACATTCAGCGACTGGAAATCGAGGTCAATGGCGTCGGAAACATAGACGACGTGGTCCTTCGTTCCGCGAGCGGACGGCACCACTATGCCCAGGTCAAATGGACCACCAATCCAACCAACATGATCGACCACTCCTACCTCACCAAACAAGACACCAAGAAGAGCAAGTCGCTGCTGCAGAAGCTCTTCCACAGTTGGAAGAAACTCACCACAGCGGGAGACCCGCCGGTCATGGAGTTGGTCACCAACCGCGTCCTCGACCCAGGCGATCCCCTGCTCAGCCTGTTGGACGGTCGAACTGACCTGCTCAATCCCGCTGCCCGCCTGCTGACACCA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 3 328130-328822 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMNK01000006.1 Nonomuraea glycinis strain CGMCC 4.7430 sequence06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 328130 30 100.0 34 .............................. GCCTGCTTCTCGGCGCTCCACGCCTCCGACGGCT 328194 30 100.0 37 .............................. CAGGTGAAACGCGAATACCACCGGCGGCGGCGATGAC 328261 30 100.0 36 .............................. ATGACGAGGACGGACGAGTCGGCCAGCTGCTGGCCG 328327 30 100.0 35 .............................. GTGCTGGTGCGGACTTCGGGGCCGACGTAGTGGGT 328392 30 100.0 36 .............................. GTAGAAGTGGGCAAGCGCCGTCAGGTGAAGCCATTA 328458 30 100.0 36 .............................. CGGAAGTTCAGCGTGACGGATGGGACCGGTAGGCCA 328524 30 83.3 36 ......G.....TT.AT............. GAGCGACGCTCGTAGGTCATCGACGGGTGCAGCTAA 328590 30 90.0 39 .............T.AA............. AGCCATTCGGGTACCAGGTTCCTGATGTCGGCGGGGGCG 328659 30 86.7 38 ......G......T.AA............. ATCACAGCGACGTTGTTCGGTCCCTCCGACCAGTCGAG 328727 30 93.3 34 ...............AA............. ATCTCCGGGCCGACCACCAGGTAGCGGTCTGCGG C,A [328737,328743] 328793 30 90.0 0 .G...T..........A............. | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 94.8 36 GTCCTCATCGCCCCTGCGAGGGGTCTCAAC # Left flank : CCGCGTACTTCCCCTTCCGGCGCTTCGCCAGCGGAAACATTGGAGCCCCATGCCCCACAGGCACCATGCCGTACGGCTCCATCCCCCCGGCGTGGAAGTACCGACCGACCACGGGGGCTTCGCGGTTGAGCACGTCATAGATCAGCCCCCTGCCCGGTGCCAGCACCATGCCCCACGGGATCTCTGCGGCCGTCGTACTGACCTCCACGCGCACCCGCATCGTTGTCTCCTCTGCTCTTCGTCGCCTTCCACCTACTACAGATGGACGAAGACTCGGCTGACCCCGATCGGAGGTCATTCCTGCAGGCCAGGAAGGTGGTACGAGCGGTCACGAGATCAGTTGGTATGGTTGCTCGTGGTCCTCAACGTGATCAGGCGCCGTCATGTGATCATGGTTTTGCAGCGAACCTCCAGAGTTTTCTGCACAACCGGAGGTTCACTGCAAAACAACTCCTGAAGCCGCATCTCTTGTGCCGTTTGACCAGTGGCTTTACCTTGGG # Right flank : CTCCACCTGATCAAGGCGCTGCAGCATCAGTGCGGTGGCGCTCATAGCCTCTGCAAGGTCCAACCGGATCTACCTCCCAGGCATAGCGACGAGCGCGCCCATTTCAGCGGGCTCCGCGCGTCGTCCATCAGTAAGAGATGGAGGGCAAGCTTGGGAGGGAATGCGCATGGCGGTGCTCAGAGGGCCTGGGAACCTTTGGGGGAAGACATCCGGCTGGATAGTGGCGGCGCTTGCGGGTGTGGCGGCGGCCGTGGCTGCCGGAACGTTGCCCGATGTGATCAAAGGTTGGCTGGGTCAACAGCAGTGGTTGTTGACGATCTTGTGTCTGGGGGCGGCCGGGGTCTTCGCCGGCATCAACCTGTGGCAGCAGCGCAGCAAGGGTGTGGGCATTGTCATCACGTTGCCCAGGGCCCCCTGGCGGGATCCGTGGAACAGCCAGTGGACCAGGGCAGCGATCGATCATGCCAGACGGCACAGGGACTCCTGCTTCACCGTGGAGC # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGGTCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 342076-343227 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMNK01000006.1 Nonomuraea glycinis strain CGMCC 4.7430 sequence06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 342076 30 100.0 38 .............................. ACGTCGCCATCAGCCGCAAGACCACCTACCAGCCGCTC 342144 30 100.0 34 .............................. AAGGTCCCCGCCCGGCGGACGCCGCCGACCTGCG 342208 30 100.0 35 .............................. CCGGTGATGGTCAGCGGCGCGGTTCCTGCCGTGGC 342273 30 100.0 37 .............................. CGGGCTGTCTTGGGCTTGCCCATGCTGATCCTTTCGA 342340 30 100.0 33 .............................. CGCTTGGTGGTGAAGATCCGGAAGCTACCGGGG 342403 30 100.0 35 .............................. GAGGTGCCCGTGCCGGGCCCGCTCAGCTTGCCCGA 342468 30 100.0 37 .............................. ACGACCGTGATCGCGCCCTCGGCGTCCTCGCGTGCCC 342535 30 100.0 35 .............................. AGCTTGTCCGAGGCATTCACCGCCATGGCACCCGC 342600 30 100.0 38 .............................. CCGCAGACGGCGCCGCACGGATGCTTCTTGACCGCGCC 342668 30 100.0 38 .............................. CGCGCGTGACGGTGGGTAGCGCGCCTACGGCGCGAAGA 342736 30 100.0 36 .............................. ACGAGCCTGGGCATGGCGGCGCCGTAGGGGCAGGGC 342802 30 96.7 37 .......................C...... CAGGTAGAAGGGCTGACGCCAGGGTGCCGACCAGCTG 342869 30 100.0 36 .............................. TACAACGGCTCAGGACTGGAGGGACCCTCGTCCTTG C [342883] 342936 30 96.7 35 ....................T......... CCGTCCTTGACCAGCATCGGCCCGGCCATTATCTG 343001 30 100.0 36 .............................. ACATCCATCTCTTCCTAGCGGGACAGATCGGCAGTC 343067 30 96.7 35 A............................. AGGAAGTGCAGGACCGCGCCGAGTATGGCCACGGT 343132 30 100.0 37 .............................. GGGTGACTTTGCCCCTGTAGTGGTCGGTCACGTTGGG 343199 29 83.3 0 ..........-.....T....TAG...... | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 98.5 36 GTCCTCATCGCCCCTGCGAGGGGTCTCAAC # Left flank : TCGAACCCTCACCGCACTCATCGCCGACCAGGGAGCCCGACAGGCCAAAGACCACTACCGGGCCCTCCTCAGGGCCATTTCGGCGACCGTCCTCCCCAGCGGCCCGCAACTGCTCGCGTGGGTCACCCGGCAGTTCAGCATCGACATGAAAGCCGCCGAGACCTTCGTACGAACCCTGATCCGGCTCGCCTGCTCGGCCGGCCTGGACTGGGTGGCCGCAGAGTGCACATGATCTATCGAGGCATCGGGTATCCAACAGGCAGGTGATCGTGGAATGGCAACGCTAACGGCTGAGGTAGGGGAAGATCGTCCTCGGCATCCCGGGATAGAAAGCGTATGGGGGGCATATTTCACCGGCAGCTCGAACGTGGTCCCCTCGTGCCTGCTGAGCTGGTTTGTGCAGCGAACCTCCGGGGGTTACTGCGTTACCGGAGGTTCGCTGCAGAATGGCTCAGTAAGCGGGTCCTCTTGCGTAGTCTGGCCTGGGACTTTACTTTGGG # Right flank : CAAGCCGTGAAGATCACGGACAACGGGAATGACGCCGTACTGCTCCTACGGCCTCAAACTGAACATCGTCCTGCAGGTGTCCGGAGTCGGGCTCGACTTGGCAGGAAGAGCGAAAGTCACGGCCTTGCTTGGGCAGCCGGTGACGGAGGATCTGGTCAAGTAGGTGACGCAGCGGGCGCCTGAGAGCTGGTGGACCAGGAGAAGCCCCCGGCCGCTCTCCTGGAACCACCTCGTGAGCGGGTCAGCAGTGTTCAGGTCGCGAAGAATCTTTGCGACACGGGTGAAGCACGGGTCGCCGTCAACGATCTCGCACCAGGTGGGGATGCCGTTCACGGAGACGATCCGCAGTTCGTACGGCGGGCACGCGTGCGTTTCGGCGTTGGCGGCGAGTTCGCCTACTGCGAGCTCCGCGTCGTCGATGTCCTCGGTGGCAACGCCGGCGTCCTGGAGCACCTGGCGGAGGATGGCGCGGGCTTGGTGGGCGACGGAACCAGGCTGCA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGGTCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 5 346039-346728 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMNK01000006.1 Nonomuraea glycinis strain CGMCC 4.7430 sequence06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 346039 30 100.0 37 .............................. ACGGCCACCGCGTCGAGATCCCGTGGGAGCTGGGCCC 346106 30 100.0 35 .............................. CAGCATCTCGGCGGCGATGCGGTCCCACCTCCCGT 346171 30 100.0 36 .............................. GTTGAGGAGGAAGGCGTGGGCTGCCTGCACGTCTGG 346237 30 100.0 37 .............................. AGCAGGTCGTAAGTAACGCGGCCTTGGAGTAGCGCCA 346304 30 100.0 33 .............................. TGGGTGGAACGTGGGCTTAGCGGCCGATCCAGG 346367 30 100.0 38 .............................. GCGCAAAGCGCCTGGAAATTATCAAGCTCTCAAGAGCC 346435 30 100.0 33 .............................. ATGACCGACAGTTAATGCCGCTGGTGCGCTGAG 346498 30 96.7 39 ................G............. AGTGAGAACCCCGTCTGGCTCGACGCATCCAGGCACCAG 346567 30 100.0 36 .............................. TGCGGAGTGGCGGAGACGACGACGTCGAAGTCCCCG 346633 30 86.7 36 ......C...............A...AG.. CAGCACGCGGGCCGGGTCATGGCGGGCGATGTGAGT 346699 30 93.3 0 ......................A..G.... | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 97.9 36 GTCCTCATCGCCCCTGCGAGGGGTCTCAAC # Left flank : CCACGACGAAGTCCCGGTCACCTGTGGCGGATACCGGCCCTTTTCCGGACGACTGGGCATCGTCGAGATCAAGAAGATGTACACCGTTCCGCACCTGCGCGGTCTGGGGCTGGGCGAGCGCATCATCACCGCGCTCGAACGCCAGGCCATGTTGGACGGCGTGCAACGCTCGATCCTGGAGACTGGAGTACGTAACACCGCGGCTCTGGCGCTGTACGCCCGGATGGGCTACCAGCCGACAGAGCGGTACATGGACAACCGTGACCCTGCGATCAACCGTGCCTTCATCAAGGACCTCACTCGATGTCCTGCCACTCCTTGAAGCCCTGGACCGGATCGGGGGAGGAAGTACGGAGGTGCTCGAACATGATCTCCACGTACCTACTGAGCTAGGTTCGTGCAGCGAACCTCCGGGGGTTTCTGCGCGACCGGAGGTTCGCTGCAGAACGGGTCAGCAAGCGGGCCCTATTGCGCATTCTGGCCTGGGACTTTACTTTGGG # Right flank : CTGTGGGAGAACATCGTCAAGATGTACGTCCGCATGCTGGGTGCTCATTACTTTGAAGGATCGCAACGTGATCTCGCTTGCGGCCGCTGGTGATCGGCGATCATGCATTGGTTCCTGCAGTGGGCGTACTAAGCATGCGCGACGCGTTTCGAGGGGGCGTTCAGTTGTTGCAGGACGGCTTGGGTTTCGGGTGACGGGATGGCGCCGAGGGTGTTGAGGCGGGTTTTGAGGTGGCGGGCGCGTTGGCGGGCTTCGTTGGTGCGGCCGAGGGTGGTCGGAGGCGGATGGTGGATCGGGTGGCGGTTTCCATGTCGGGGTCGAGGGCGCAGGCCTGATCGTAGGTTTCCAGGGCGCGTTCGTGGAGGGCGTCGAGTTGGAGCAGGGCTTTTACGCTGGCGATGGTGAGGGGCCAGCGGTGGTCTTGGTCGAGCCAGTCGTATTTGAGGCCTCGGGCGAGTGGGCCGCGGCATAGGGTTGTGGCGGTTTCCAGGGCGGTGAGT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGGTCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //