Array 1 514712-514094 **** Predicted by CRISPRDetect 2.4 *** >NC_011726.1 Rippkaea orientalis PCC 8801, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 514711 37 100.0 35 ..................................... CTTTTGAGGGGAACTGTTACGGGGATAGAATAAAC 514639 37 100.0 36 ..................................... CAGTCCTTCAACTAAAGCCAATCCATTGTTATGATC 514566 37 100.0 35 ..................................... ATCACGGTTTTAGTCTTTATTCCTACCGTCGAACG 514494 37 100.0 37 ..................................... TTATATCCAGTTAACGGGAGAGTTTCAGCAATCAAGA 514420 37 100.0 35 ..................................... TTCGCTAATCATTTGACCAACCATATCACAATCAG 514348 37 100.0 36 ..................................... GAGCCTTCTACTGTCAGCTTTGAATTAGTAGCATTA 514275 37 100.0 35 ..................................... TCGGCATTCCATTGTGTTCCCGGTTTTGTTTGCGT 514203 37 100.0 36 ..................................... TAAAAAGATAAGATAGGAATAGAGGACATACGATAA 514130 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 100.0 36 GTTTCTTTTTAATGAATCCTAGTAATGGGATTGAAAC # Left flank : CTTTGAGTTTACGATGAATACTTTGTTTTATTTAATTATCTACGATTTGCCCGCTACCAAAGCAGGAAATAAACGACGAAAACGACTTTATGAAATGCTTTGCGGTTATGGTAATTGGACTCAGCTTAGTGTGTTTGAATGTTTTTTAACGGCTGTCCAATTTGCTAATCTTCAGTCAAAACTGGAAAATTTGATTCAACCTAATGAGGATTCTGTTAGGATCTATATACTGGACGCGGGTTCAGTTCGTAAAACGCTGACTTATGGTTCAGAAAAGCCTAGACAAGTTGACACTCTCATTTTATGATATTTCTGACGGGGCGAAGCGCGGTCAAAATCCCTGGCCTCCCGTCAGATCCCTAGAACCTTGATAATTAAAGAGTTGTAGCTGTTTCACCTCTCGGTTATCACTAAAATTGATGTTCTCAATCACTCAATTTTTTGAGTCCCGTCAGATTTAAGCTCACAATCCTTATGGGGACTGGATTAGGGCGATCGCA # Right flank : TCCTGAAGGATATAGTTATTACGATGGCGAGAAAAAGGGATGATCAACCATCCCTTTGTTATCATCACAAGTACGAGAGAGCAAAAAAATAATCTCTCCGAGGAGAGACTTAAAATCAACTGTTGCGTTAATTTTGGATGCGTTTAGCGAGTGACTCGCTGGACTAACGCAATAACATCACTCCGACTCAGCTTTTCTTTTCCTAAAGCCATTACTTCTAGAGTTCCATAGGCCAAAGCTAAAGGAATTTTGCAAAAATCCAAAGCAGGTCCAGAGGGCAGAGACTTAGTATAGAGATCAGCTAACTTGAGGTTACGACGGGCATACTGGTGGACATCTTGTTCGTTCCATCCTTGGGGTAAGAAATTGACCCCACGGCGCAGATCTTCACGGTGATTACGAACAATATTAACTGCTTGTAACCCGCGACCAAAGCCAATAGCATAGCTTCGGTTAGTTTGAGTTCCATCATACCAAGCCCACAAATCCGATAGCAATAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTTTTAATGAATCCTAGTAATGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 2 604962-604771 **** Predicted by CRISPRDetect 2.4 *** >NC_011726.1 Rippkaea orientalis PCC 8801, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================== ================== 604961 38 100.0 40 ...................................... ATTTCTGAGTCTCAGGTTATTTATTATTATGATCATTCCC 604883 38 100.0 37 ...................................... CCTGAATTTTCGGCTGCCTATGCTGCAATTCCTTATA 604808 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ======================================== ================== 3 38 100.0 39 AGTTAAAATAAGCAATAATCCCTATGAGGGATTGAAAC # Left flank : CGGCGATTCCTGGGGTTCATGTTCATTGGTATGGTAAAACCGAGTCTCGTCCTGGCCGAAAATTAGGTCATGTGACCGTATTATTAGGAGAGATTAATGATAGCTTGACTGATGAAATGTTGAGAGAACAGTTATTAGGAACAGTCAAGAAAATAGAATCCATTTGGTATGAGAGTGATTCAAGGGAATAGGGAATAGGGAATAGGCAACAGTAAGCTGTGATTAGGTTTTCGCATCTCAAGATGTCCTAAGCAAAATAGGTCTTGCTATATTTGCGCGAGGGGGTAGGTGTCAAAATTGATGCCATCGTACAAAGAGCCTCTAACCTCTATCAAGCCTAGGTTTCAGAGCGATGATTCAGTACAACCCCACGCGCACCTTATACAATGCGGGTTTTGGCGATTTGACTTGATCATTTAGGTCGAATTATGTTATTTTTGAGTAAGGGTCGCGCAAATGTACCTTGAAAACTTGATAGTGTAAGCCTTCTAGACTATAGC # Right flank : TAGACAGCCTTTTATCCTTTTTACCTTTAATTGTGCCGACCGACTTAATGCTATAGTGTTAATTCTCCTCGAACAATAGGATAAACAGAAACTTTACTGATTGTTGCTATCCCTTCCTTTTCTTCTTGCTTCTTCAATTTTTTAACTTTCTCTTCTAACTCTTTAACTGTTGGAGAATACTCCCAAGACTTTCTCTCGGACACCAAAAATGTTACACCTTTGTATTGTAAATTCGTGTCGTATTGCTGTTTATAATCCGAGACAAAAGCGACAATATTTTGCTTGAGTTCTTCCTTTTCTTTTTCGAGTTCCTTAATAATAGTACAGATTTCTAAATATCGTTCAAGTTGTTGTTCAGGAGTCATCCCAGAAGCAATAGTATTTTTTTTGATATTTTCAATATCAATATTATTATTTAAAGGAGGATTATAATAGTTAATGTAGTCAGATTCGATCTCAACTAATTCAGCCTCATCACAAACTAACCAACATAATTTACT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTAAAATAAGCAATAATCCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 3 911959-913021 **** Predicted by CRISPRDetect 2.4 *** >NC_011726.1 Rippkaea orientalis PCC 8801, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 911959 37 100.0 37 ..................................... CCGTTGGTTGCTTCTTCTAAGGGATCAATGGTTAGGG 912033 37 100.0 37 ..................................... TCGATCATCCCCTGAATTGATTTGACGCGGTTAATTT 912107 37 100.0 35 ..................................... CTAAGCCAAAAAGGGACGGATTTAGAGGAATATTG 912179 37 100.0 38 ..................................... TCGTCGCCTGAATATCCCAGGGCTTTGATAGTTAAAGT 912254 37 100.0 34 ..................................... GGTTAGCTTGAAACTGAGCGGTTATTTTTAATAA 912325 37 100.0 39 ..................................... TTTTGTATGCTTCTGCCTTTAATCCTAGGGTTTTAAGTT 912401 37 100.0 36 ..................................... ATCGTGACTTTTTCAGGCTTTTCATCTTTATCCTTG 912474 37 100.0 35 ..................................... TCCAACTTTTTAAAAAATAGCTTGACAATTTGATT 912546 37 100.0 39 ..................................... ACTTTATGATTCCTTTACTTTAGATCATGTTGGTATTTC 912622 37 100.0 38 ..................................... TCGTTCTTTCCAATGGGTCCGTAGCACTTCCCGCCGGG 912697 37 100.0 35 ..................................... TTGTTTTGTCTTCTCGTCGTCGTCGTCGTTCTTCC 912769 37 100.0 34 ..................................... TTTAAATGCTAAGCGATCGCATAGTTTTTTGTGC 912840 37 100.0 37 ..................................... AATTCTTGCAAACAAACAGTTAATTTTTTTACTGTCT 912914 37 100.0 34 ..................................... TTTAATAAGTTTAAAACCCTATCAAGCCTTAAAC 912985 37 94.6 0 .................................G..T | ========== ====== ====== ====== ===================================== ======================================= ================== 15 37 99.6 36 GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC # Left flank : GAGCCTTTTGGGGGATTCATCAGTCAGGACAACCCATGATTGGGGTTTCCAAAGATCCCGTTGATTCAGTTAAATTAGGACGGATTTTACAAAAATTAGGGTTTAGAGAGGCGGTTATGTTAGATTCGGGAGCGAGTACTTCTCTTGCTTATCACGGGGAATCCTTGGTCGCTTATATTCCTCGTCCGGTTCCCCATGTAGTTACTTTGTTGCCGCAATGGGAATTATTAGTAAGTCAACAGGAAAGGGATTAGGTCTTGTTTAGGGGTCTAGACAGCCTAGACAAATTCAGACTCTCATTCTATGATAGTTCTGACGGCTCGAAGCGGGGTCAAAATCCCTGGCCTCCCGTCAGATCCCTAGAACCTTGATAATTAAAGAGTTGTAGCTGTTTCACCTCTGGGTTATAACTAAAATTGATGTCCCCAATCACTCAATTTTTTGAGTCCCGTCAGATTTAACCTCACAATCCTTATGGAGAGGGGTTTACAGCGATCGCA # Right flank : TCTGGCTTTTGAAAGCAAAAAGTTTTTGGAGGAGGGCATAAATTCCGGTTACAAGACAAATTCTATATGGGCTTAATAATATTAAGCCCCTACTGACTGACTTCTGACTTCTGACTTCATTAACGGAGGGTAGAAGCCTAAACTATCGTAAAAACTTGCCCCTATGCCGATTTTATTTGTGGCAAACATTTAGAAATTTTATAAATTTTCCTAACTGCTTCAACAAGATTCACTTTCAGAAATGGCTCGAATACAAGACCAATTACTAGGAAGAGAAGAAGGCCAACCCATGCGAATAGCTTCAGGACAAATAGTCATCACAGTTAACTGGCAGTCAATTAACTGAAACCCTTCTTTTTCGCATTGTTTTAAACTGTGTTTGAGAATAGAATCATTCTTAAATTCAATCGTTTTATTGCACTGAATACAGACCATGTGATGATGATGGTTAGGAGAAGGATGATTGAGTTCATAATGTTTATGTCCTTCAGCGAGTTCCA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTATTAATGAATCCTAGTAATGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 4 2284146-2283960 **** Predicted by CRISPRDetect 2.4 *** >NC_011726.1 Rippkaea orientalis PCC 8801, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2284145 37 100.0 37 ..................................... TTTTACGCTGTGCACCCAACTCTATTAACTGGGATGG 2284071 37 100.0 38 ..................................... TTTGGCGGGCGTAATTGCGTGACTCAATGAAAATGACT 2283996 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 3 37 100.0 38 GTTTCAACCGCCATCCCGATAAGGGGTAGGTTGAAAG # Left flank : TTATATACTTAGATTTAAGTAATCGCGCCGTAGATTAAGTTCATTCTTGAACCTCTGATTTGCGAAAAATAAGGTGTTAGTTTGACTATCGGCAGATAGTTGTGCTTTCTGACCCTAGTAGCTGTCCACCCTGATGCTGATTCCTAAATACTAATTTTTAGGGATGATTAACCTGTAAATTGAAATTAGCTGATAATTTTATTTTATAGGGTAGGTGCGCTCCCAGCAATAAGTGGTGTGGGTTTACTACAGCGATGGCTACTGAATCACCCCCGACCTAGGGGGAATCCACCTCTTTATTTTGTATTTCTGACGGGACAAAGCGGGGTCAAAACCTCAGAGAGTGCCATCAGATCTCTGAAAATCAGATATTGACTGGTCTACAGTCATTTAGGGATGGACTAATTCTTGAAATTTCTATGGGAAATAAGGCAACTTTGACGAGAGCGATCAGATTTGTTCTTAGAACCCAGTTCCTATCAGAGATTAAGCTGTTAGGG # Right flank : GGGCAAAAACTCACGAACGCACTTTGTTAGTGCTTAGTTTTAACAATCATCCCAAATAAATAAACTACAGTTATAAATTTTAGGTGGATTGAAAGAGAGCAGGGGACTCTTAATCAAGTCTATATACAATTTTAGATTTTTTGGTTTTGTTTTTTTTCATAAACGACAAATAATTTGTTAAGACGACAACAATCTGTTACCGATGACAAATAATTAGTGATTGTACAATTTTTGTATGGCTCGGGGCAGATTTGAACTGCCGACCTTGGGCTTATGAGTCCCCTGCTCTAACCAACTGAGCTACCGAGCCTAATTTTTTCACATCTTTTATACTAACACAAAATCATAGCAATTGCAAGCAGTGATCCCAAAAAATTAACGGATTTGCTTTAGAAATGATAGAGGGGTCAACAATTGTTGACCCCTACCATAGCCTCTTGCGGTTAAGAATTAGTTTTTGCGAGGTAACATAGCGATAGGGTTAACGGCTCCCCGACCAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACCGCCATCCCGATAAGGGGTAGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 5 3093018-3093354 **** Predicted by CRISPRDetect 2.4 *** >NC_011726.1 Rippkaea orientalis PCC 8801, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 3093018 37 100.0 43 ..................................... TTATGTTGCGTAAAGGAAGGGTGAGTAGTCGGAATTTCTCGGA 3093098 37 100.0 36 ..................................... TTCACAGCAAGATCTAGCCGTACGACTAAACTGCCA 3093171 37 100.0 39 ..................................... AAACCAATAGGAGCTAGATAAAGCTTTTTTATAGTTAGC 3093247 37 100.0 34 ..................................... AATAAGGATTAATTTCCCAAGTTAAGTTTTTGAA 3093318 37 86.5 0 ...................CT............G.TT | ========== ====== ====== ====== ===================================== =========================================== ================== 5 37 97.3 38 GTTTCATCAACCCTCCTGATGTGGGATGGGTTGAAAG # Left flank : AGTCCATGCTCTTTGAGCCTCTGCACTGTGAAAAAAGTGGGTTAGTTTAGCTATCGAAAGATAGTTTTTCTTTCTGACCCTAGTAACTGCTTGCTCCTGATGCTGCTATCTAGAAACCTCTTTTTAGGTAGGAACACCCCGAACCTAGTTGCTCATACTTCTATGGTAAGGGTTAGGTGCGCTCCCAGCAATAGTTTGAGTAGGCGGTGGAAGAGGATTATCCAAAGCTTAATCCTAATTTTAGGATGCGGACGACCGCAGTAGTGGTTACTGAATCACCTTCTTCATCGGAGGAATCCTTCTCACTTTTTTTGACGGCTCAAAGCGGGGTCAAAATCTCCAGAGTCCTGTCAATATTCTTAAATCCTTGTCAGTTCTAATTTTTAGTGTCTTAATTTGTGTTTTAGTTGGTGTTTGGACATCAATTCAACCTATTTTTCAGTAGACCCGTCAGAATTGATTATGAAACCTATCTATAAAAAGGATTTGAGACAGGTGGA # Right flank : TCATGATCATGTTCAAACATCGAGAAGGATTGAAAGGCGCACTTCGTTCGGGATCGTAGACTTATAAAAATATTCGATCCCAAAATAGCGACACTTAATGTCTGAACAATTGTCCATTAAATAATTATTGTCACAATTAAAAAATTAATGTCACTTTTTTGAGAGAGTTTTAAGATACCGCAAGGTTCTGTTAAATAAAGCTTTCAGCGATTGAAAAGAGTTATATCCTGTCAATTGTCATTTTAAACTAAAATGTGTCACTTATTAAAAAGCCTTGCTAGAATCTTTAAAGTAAAATATGTCAATGATTATTCAATCTGTCAACTCTTCTAAACAAGAAACCATGAGCAAGTCTAATATAACATCTCACAAAACTGAGATAAATAGAGAAGAACAGGATTTAGAGCAGACAGAATCTCAAAAAAGTCATCAAAATCACCTCAAACTCATTAATACCCAACTTTCTCCTGCAACCGAGGAAATTATTAATGCACTTGAAC # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCAACCCTCCTGATGTGGGATGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 6 3103986-3104240 **** Predicted by CRISPRDetect 2.4 *** >NC_011726.1 Rippkaea orientalis PCC 8801, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3103986 37 100.0 34 ..................................... AATGATCAGGCTCCGATAGACTGGGGTGGCTTTG 3104057 37 100.0 35 ..................................... AACTTAATCGCCATCAAAATTGCCTCTATTTCTGC 3104129 37 100.0 38 ..................................... AGCTAAAGTTTTCGCTTGATGCAGTGGGGGTAGCAAAG 3104204 37 97.3 0 ........................T............ | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 99.3 36 GTTTCATACAGGTTTTTGACCTCCCATTGATTGAAAG # Left flank : TGTTATACAGTCTTACTTTCTGTACCCTATAGTGCTGTCTGCTCCTGAAGCTGAGTCAACGATATTGTCTCGTCTTGACTGACACAACCCAACATAATCAAAACCAAGTGCTTTGATTATACCTTGGTAAGGTCGCACCTAAGCAAAGGGGGTATGGTTTTCTGGGGGGACTATTCCACAATGGAATCCCAGAACCTAACGCACGCTGTGAAAAAACTACTTTGGTAGTTTCTATCATGGCAAGTGTGATGCCTAGTCGTCAAGGATGGTACTAAAACACCCCTTTTGGGGAATCTCTTTTTGAAACTCAATCTGACGGCTCATAGTGGGGTTTAAATCTCAATGGAAGCCGACAAATGTCTACAATCATTACCTGAGTTGATTCTCAAAAGTAGTTTTCTTGTAATAACAAGGTGACAAGAAGGCTTAAATAAGACTTTAAAATAAAGCCGTCAGAAAAGTCACTGAAAACTCTGTCAAACAGGGTTGTAGAAGGTAAA # Right flank : GGCAACACCAATAGTTTCATTAACCTATCGAATGGGCTATGATTCAGAGTTGAAGAGATTGAAAGGCGCACTTCGTTCGGGACTAGGCATTAAGCCATCATCTTGGTGATGGTGCTATTTCTGTTGACTGTTGGACTTTTTTGACATTAATTCTTTAAATCAAGAAAAAAGTTGTTTTTTGAAAACTTTTAATCATATTTTGATTCCTCAAAAATCCCTGAACCTCCTATGGATACTACTATAGGCCTCTATGCCACACTTCTATTTGTGACATTAATTTTTTAAAATGTGACAATAATTATTTAATGGACAACAATCTAGAATATTTTTAGCGACACTAAAGTGTTAAATAGCGACGATTAATATGTGAACAACGACATTTAATTAGTGAATGTACACTGTACAAATCGGGATGACAGGATTTGAACCTGCGGCCCCTTCGTCCCGAACGAAGTGCGCTACCAAGCTGCGCTACATCCCGTAAAATTAAACAGCATTTC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATACAGGTTTTTGACCTCCCATTGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 7 4331329-4328521 **** Predicted by CRISPRDetect 2.4 *** >NC_011726.1 Rippkaea orientalis PCC 8801, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================== ================== 4331328 37 100.0 38 ..................................... ATTTCCGTCACCACATCGTCGTCGTCTTCATTTTCGCC 4331253 37 100.0 37 ..................................... TTTGCCCAATTATTCCCACAGGTCTAATGGCTTGAGT 4331179 37 100.0 35 ..................................... TAGACAATAGTCCCCAAGGGCTTAAAATTGCGTTT 4331107 37 100.0 35 ..................................... TCGTGGACCGGACGGGAAACAACAGATCATTTTTA 4331035 37 100.0 32 ..................................... ACAATTTGGACGGCGTTGGTCGTCGTCAACAG 4330966 37 100.0 33 ..................................... AATGATTAAGCTTCGATAGACTGGGCTGGCTTT 4330896 37 100.0 35 ..................................... AAAAGCGGTTAAACGACCTGCAAAAACAGCTAAAG 4330824 37 100.0 37 ..................................... ATTACAGTTGGGGCTGGATTAATTGGGGGAGCGTTAC 4330750 37 100.0 36 ..................................... ATAAGCTCAATCTCCATAGGTAACGGTAGACAATAA 4330677 37 100.0 36 ..................................... GATCCATTTTTGCTATATCTTGGGGAGGGGATTGGT 4330604 37 100.0 35 ..................................... TTCCCCTGCTCGTTGAATGTCGCTGTAACGTCTAG 4330532 37 100.0 36 ..................................... ACTGTTACCGATGAAGACGGCAAAACCACCGTTACT 4330459 37 100.0 34 ..................................... TTTATCCTTAAAAGATAAAGCCGTTGCCATAAAA 4330388 37 100.0 37 ..................................... ATTTAGCCGATTGGATGGATCGTCCTTATTCTCTTTA 4330314 37 100.0 37 ..................................... GACTAGATGGATCAATCAAAGGATTATTTAAGGTATT 4330240 37 100.0 36 ..................................... CTCTATAGATTTGATTTTCTGAATGATTGCGTCACA 4330167 37 100.0 36 ..................................... TCTGTTGTGCTTCCTGCACCCCCACCTGTGTTTTGT 4330094 37 100.0 34 ..................................... GCCCATAATATCCTTGATTCGTACGCGATCAAAA 4330023 37 100.0 34 ..................................... GTTTATCGACAAAATCTTGGGCATCTTCGGCTTT 4329952 37 100.0 37 ..................................... AGCTTGTCCATTTTGAAGTTCTTTGACAAAACAAATG 4329878 37 100.0 33 ..................................... ATACCAATATTCTTTCCCGTTGGTAACGGTTGC 4329808 37 100.0 36 ..................................... GGATTGATATAAATCTTTCCTGTGGTTGTTTTTTTC 4329735 37 100.0 52 ..................................... AAATCCAGTTAACACATAATCATAATTTTTCCTTTGTTGTTATGCGATCGCA 4329646 37 100.0 37 ..................................... AAATCCAGTTAACACTCCATTGATCAATAGCAGATGT 4329572 37 100.0 35 ..................................... ACACTCCAATCTCTAGGACGTTCTGAAATTGTTGC 4329500 37 100.0 35 ..................................... GGCTTGGCAGGAAAACTTAAGCCTTTTATTGATGG 4329428 37 100.0 35 ..................................... TAGCTTTCTTCAGTCTCAATGAACTTGATGCCATA 4329356 37 100.0 38 ..................................... GAAGCTGTGTCGTGGCCACAACATACTACATTAAGCCA 4329281 37 100.0 36 ..................................... TCGGCATTCGATCGTGTCCCCGGTTTTGTTTGCGTT 4329208 37 100.0 35 ..................................... AAGACTTCTCCTACGGTAAAAGTCACAACCTTTGA 4329136 37 100.0 32 ..................................... CGGACTTCAAGAGTCAAAAATTGGCTGAAAAA 4329067 37 100.0 37 ..................................... GATAACTAATGGTTTCAATACAGTTATTGTCAAAACA 4328993 37 100.0 34 ..................................... AGGGCAAAGAAATTTTGCATAACAATAACGATTT 4328922 37 100.0 36 ..................................... ATTGCGATTGTTTATCGATTTTTCAAATAATATGGA 4328849 37 100.0 35 ..................................... AACAGGAAAAGACAAGAAATCAGACAAAGAGCTGA 4328777 37 100.0 37 ..................................... GTTGATAATTTGTGAAGCATAAAAAGTATTATGTGTA 4328703 37 100.0 35 ..................................... CAAGACAATTTCCCCCCAATCCTAGAATCTCAAAC 4328631 37 100.0 37 ..................................... CCGTGCTATCATCAAGAAGTCAAAAAACTCGCCTAAT 4328557 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================================== ================== 39 37 100.0 36 GTTTCTTATTAATGAATCCTAGCAATGGGATTGAAAC # Left flank : CCGATTTAAACGCGGCAATTAATATCGAACAGACTGCTTTTGGGCTTGACAAATCTTAGATTTTTGCTATTATTAAATCAAGAGATTTTGAACCTTGAAAACTGAATAAAAATAGATCCCCTAATTTTGGCGAGAGCCACCGTACCCAAGTTTCAAGGGGGAACGTCGGTGAAAGACCGGAAAAGCTTGCCTTTGAGTGCCATAGTGTGCTGTCAGCAAGAAGCCGCAAGGCACAGCCTGAGATTACAGGCTAATCCCTCCTTTTTAGGGGATCTTCGCTAGGACTTAACTATCGCTAGAACTTAACTAAAACTGACGGCTCGAAGCGGGGTCAAAATCCCTGGCCTCCCGTCAGATCGCCAGAACCTTGATAATTAAAGAGTTGTAGCTGTTTCACCTCTGGGTTATTACTAACATTGATGTCCCCAATCACTCATTTTTTTGAGTCCCGTCAGATTTAACCTCACAATCCTTATGGGGATGGGCTTGGCGCGATCGCA # Right flank : AGAATAAGCAACCCCCGACAATTAAAAATGATCTTTGTTTCTTGTCAACAAAGACGGGAACACGAAAATTCCTAATGAATCTCCCTACAAGAAGCAGGGAGAAAATGATTTCCCCATGCTTCCCTATCGAGAACCTTGATAGATACGTCGGGACTGCTCTACGGAAAGATGCTCGTATCCTGGTAAAGAAGAGCCATTGTTGGCATTGTCTGAGCCTTTTCCATTAGATTGAGGAATGGTGAAAGGAGTTTGAGTGCTAACCGGACAACTTGGATGTAAATTGTATTCAGGTTCAGGAACACTTAAGCGACTTTGGGGAGCAACAAAATCATGGGATAAGCCATCATAGGCAAGAACTTCTCCGGTTTCAATGCGATAAATCCAACCATGTAAGGTTAAATTGCCTTGATGCAGTCGAGAACGAACGACTGGATAGGTTTGTAAATTTTCCAGTTGGGTTAAAACATTTTCCGCGACGGTAATTTCGAGGAGTTCTTCCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTATTAATGAATCCTAGCAATGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA //