Array 1 25985-26282 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPDF01000005.1 Alkalihalobacillus clausii strain 7894-1 contig00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 25985 32 96.9 35 ...........A.................... GCATTTACCGAAATAATCTAGGTAGACATTTTCCA 26052 32 100.0 33 ................................ GCGTAGTCCACAAACGGATCGCCCTCGGTAACT 26117 32 100.0 35 ................................ AGCGCATCGGGGTCGCCAACCCACTTTTGGCCGCG 26184 32 100.0 35 ................................ TATGAAGCCAGTCCTAAAAATTCGATAGGATTCAC 26251 31 78.1 0 ............T........AC..-...TCA | A [26261] ========== ====== ====== ====== ================================ =================================== ================== 5 32 95.0 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : AGCCCAGCAAGCCATTCGGTTAGTTAAACAACTTGAATTAGAAACATCGTCGATCCCGATCATAGTAAAAGGGAGTTTATTAGAGAAAAACGAATTTGTGCGCCACCATTTTGCCGAAAAACTAAAACAATGTTCAGCTGACATTTCGATTGTTTGTAAAAGCCGACCAGCCGTAACAGGCGCTTTGCATGCATGGAAGATTTCAAGTCACCATTAAATAGGACCAACTTTTGTGCCTGGGCCGTTTCTTTAGAACGATTCAAGAGACAATGTTGAACCAAGGGAAAGGATCACCTAAACGAGGATAACGAACAGTCAAAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAATGGCCTTAAATATGTGTTAAAATGCACAAAGATGTAATAATATGGTCTCATTTGCTGTGCTATGATAGGAAATAGAAGCGAAATCAATCGTTTTCGGTTGTTTATTTTCCGGAAAATGGGTAAATGTCGCT # Right flank : ACTTCTACCTCTTGTTTGATTCCTTTCCTAACAAACCCATTTTCTTCTTGTAAAAGGTCTTTTGGATAAATGCAACTACCATTCCCGTGCGGAGAGTGCAAAATGGCGTAGCCATTAAAGCGAATGTGCTTTCTGGCGCAATTGGGTTGTAACGAATTGGACAAACGCTTTGACGACAGAAAGGTCGAGTGCGGAATTGGAATAGATTAACCACGTTTTTCTTAATAGTGGGTGGTTATCAATGGCAAGGATGCGGTTGTATAATTGGTCATGCGGACGAAGGGAAATTTGAGGGATGATTGCGTATCCTAAGCCATTGCGTACCATTTCTTTGCAAGTCTCGATACGGTCGACTTCCATCGTTACCATTGGTGGCTGGCTAAAATGATGGTTCCACCAGTCTTTGATCATATTATCAAAGATTGGATCGGTTTTATAGGATATCCTTCCAATAGAAGGGAGATCACCCATATGAATCTTATTCTTTGAAATTAAACACA # Questionable array : NO Score: 8.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 39965-40596 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPDF01000005.1 Alkalihalobacillus clausii strain 7894-1 contig00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 39965 32 100.0 35 ................................ TTATAGGGTCTCTCGTCAAATAATAAAATTCTGTA 40032 32 100.0 34 ................................ AGAGGAAGCAGAAAAAGCGGCACGAGAGTACAAT 40098 32 100.0 35 ................................ TCTACGTCAACGCCGCGAAAAAAGGCTGGAATATG 40165 32 100.0 34 ................................ AAAGATCACTGCACACCCACCAGTGCGTGACCAC 40231 32 96.9 35 ..........A..................... AACGATGTCCATTAGGTCGTTTAACGAGCAATTAA 40298 32 96.9 34 ..........A..................... TCTTCGAGTTCAATGATTTTCACAGTTGCTTCTA 40364 32 96.9 35 ..........A..................... TCGAAAATGGCGGCGACTTGCGCCACTTGCAGAAG 40431 32 100.0 35 ................................ GGTTATTTTGCATAGGTCGCCTCCACTGAGATTTT 40498 32 96.9 35 ...............G................ AACGATATAGCGAACATGCTGCAAATCATCTATGT 40565 32 81.2 0 ..........A...........C.CA.A..C. | ========== ====== ====== ====== ================================ =================================== ================== 10 32 96.9 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : AAACAAATATATAGGAACAACATCAGATTCAGTACAAGAAGAAACGATTCTCTTATCTCCTCAGGCGATTGAGCATATGCCGTCATAAAAAATACCCCCTTCCGAGCTATATAATCAATGTTTAGGATGTCTCTCATTAAAAAAGCAAGCGTTACCAACATCCTAACACATGGACAAATCGTGTGTCTCTTATTGTAAAAACGGCGGTGGTGTTAGTTAGAACCCTTAGTATTACAGAATAGCAATACGGTGGAACGATCCTTAAAGGCAACCGATTCTTGATTTCTTCAATAAGCACTCGCTGAAACTCACTTTTCTCTAGTGCGAACCCTAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAACAGCCTCGAATATGGGTTACTATGTATAAAAATGTAATAATGTGACCTTGTTGGGTGTGCTATGATAAGAATTAGAAGGGGAACCATTCGTTTTCGGTTGTATATTTCCGGAAAATGGGTGAAATTCGCT # Right flank : TAAGACAAGCCCCACCGCTTGCTGCAACAAGTCTTTCCCTGCTCAATTCGAGTGCAAAATACGTTTCTCTTACTAGACCAACAAGTGCATCACACCTATAAATACACGTATTAAAACACAAAACTAGAAAGTAAATTCCAATTAAGGGAGGAGTAAACAATGGAAGAGAAAGAAATGTTAGAGCTCTTGTTACAGAAGGTAACTGACCTGGAATTGGGGTTGAAAGAGCAAAAAGAGCATAATGCTGTAGTTGCAAAAGATTTAAAAGAGCAAAAAGAGCATAATGCTGCGGTCGCAAAAGATTTAAAAGAGCAAAAAGCCTATAATGCAGCATTCGCCAAAGACTTAAAAGAACAAAAAACACAAGTTGCTGGGAGCACAAAAGAACTAAAAGACCAAAAAGAGCACTACCTGGCCATGGCACAAGATATCAAGGAATTAAAAGAAGATCAGCTCATAATTAAGCAAGCGGTGCTTGAAACAAATCGAATTGTAAAGAA # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 93632-94257 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPDF01000005.1 Alkalihalobacillus clausii strain 7894-1 contig00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 93632 32 100.0 35 ................................ CCGATTGGATGAAAAAGGCGGGTAAAAGGGTCCCT 93699 32 100.0 33 ................................ TCTACCGTGATGACTACTACGACAAAGAGAGCG 93764 32 100.0 33 ................................ ACGCCTTTGCGACCAACGGCACCAAGCAGGGTG 93829 32 100.0 34 ................................ ATTAATCTTTGTATTTATGGCTTGATGCGGCGAC 93895 32 100.0 34 ................................ TACAGTAGGGATGAAACCGAACGTCTTGGCCTGA 93961 32 100.0 35 ................................ CTTTTTCAATTTCGTAAATCCTGGCTAGTCCAAAA 94028 32 100.0 34 ................................ CTCATTATTTTGCTTTTCCATCCATTCTGCCTGG 94094 32 100.0 34 ................................ CCGTGGCAGTGCGCGCAAATGAAATGCGGCCGTG 94160 32 100.0 34 ................................ TTAACACCCATGCGTATCACCTCAATACCCATTA 94226 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 10 32 100.0 34 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : ATGGGCATTCCAATCATCGCGATTCAAATATTGACGATTATCGCCGCCAAAAAAATGATGGACGAAGACAAAGCATGGATTAATAACGTTAGAAAAGAGAAATAGGAAAGGGCAATGCTGAGCCTGCCGGCTACTTTTGCTGGCAGGCTTAAGCTTTGTATTTTTGGGGAAACGCGAATTTATGAATGGAAGTTAGATTTGCGGAATTGGCGATTGCTTGTAAAGAAAGGCATCGATTTTTAATCTATAAAAATTAAAGGCGAAAACATGATATAATTTTTTGTAGACTAACACAAATATAGCAAATAGCCGATTTTATAGTGCGAACCCCTAGCACACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAAATATGAGGAAGTGTGTGTAAAAGTGGTGAAATGTTGTTGGTTTCCCATGATATGATAAAGGAAAAGAGCGGCTTTTCTCTATTATTTGTGGTTTAGATTCCAGAAAATAGGGAGATTTGACT # Right flank : TGTATTTTCAATTCGATACAAAAAAAGCCTCGACACGAAAATGCCGAGGCTACAGTTTTTAGAATGGTATATCACTTTTGCCTATTGATTTAAAAAAGGTACATTAACTTCGCCCGCAGTTTTAGCAAAATTTGGCGAGGATAAAATGGCAACGATGGCTGACAGTTCATCCTACTATTTGCTCGAACGGGCCAACGCCCGTTTCTGAAAGATAGTGTTAACAACAAGGGAACATGCTATAATTGAAGCACAATAGCATAACGGTTTACTCAAGGGTGGTCGGCACACTCCCATGAAAGGGGGTGTTGCTGTATGACAGTATTTGAAGGAATTTCCCTTATGTTGACGTTCGGGCTACTGATCGTTGCATTGCTGTCGTTTCACAACCATAAAAAATAATCCACCCTTGAGTTAGCGGCTCAGGTGGATTATTCGTCCAATCGGCCGATCCCCCTTGCAGGGAACCGTGCTATTGTTTGACTGAAGGTGTACCAGCACCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 105809-106708 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPDF01000005.1 Alkalihalobacillus clausii strain 7894-1 contig00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 105809 32 100.0 35 ................................ GAGCGGTGTAAAATGAAGGCTTTTGGAGGGAGGTG 105876 32 100.0 36 ................................ AGCCTCTATGTCTTCAAGTGGCTTCTTTTTAAGTAG 105944 32 100.0 35 ................................ TTGTTGATTTTGATCCACAAGCTAACAGCACAAAC 106011 32 100.0 32 ................................ CTTAAATCCCGCCGTTTTTCGTACCCTGCCGG 106075 32 100.0 36 ................................ GAGCGTATTGAGAGAAGAGTTAAATAGGACGGAATC 106143 32 100.0 36 ................................ CTTTAGCTTCTTCGTCAACTTCTTCCGCGGTTTTTT 106211 32 100.0 33 ................................ CATTGAGGCGATCAACAATTCTCTGTCCTCTTC 106276 32 100.0 33 ................................ CAACAAAAGCGGATTTGTTGCTGGGAGACCCAG 106341 32 93.8 34 ..........TA.................... TCAGGAATTTGGGCTACCCACAGCTTTGCCCCTA 106407 32 100.0 36 ................................ GAAAGAACGATAACTTCATGTGTTCCAAACAGCAAC 106475 32 93.8 36 ..........TA.................... ATCTATACCAGCTCCTTTTCAATGACAGCCAATGCC 106543 32 93.8 36 ..........TA.................... TTTGCTCTTTGGTAATGAACCCCCATACCTTGCAAA 106611 32 93.8 34 ..........TA.................... TTTGAACTGGTCGGGTGTCCAGAAGTTCATTTGC 106677 32 96.9 0 ............A................... | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 98.0 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : CGCCACAAAAGAAAAGTGCCTCCCACGAGAAATTGATGTGAAGCACTTGCAAGACACGCTGGTGAACCAAGGGGCGATATTAAGCTGACATTTTCGAATAAAAGGATTTGCAATGGTGCTTGAAGATGGACTACCTATAAAAATGAGACGAACAAGAAACTCCAAACATTGGGTTATGGAGTTTCTTGTTTTAGGTGTTCGTGGTATTAAAATGGGGTGGGATTAGAAGGATAGGTGGGAGCAACGGTTTAATTGGGTCAACCTAAAGAAGTTTGCCATTGAACATTAACGCCGTCGAAGACAAAAGCTTAAATCAGACGGTGCGAACCCCAAGCGCACATAAAATTACTAGATCACCCGCACCAAAATAGAGCGCGAATATGAGCTTATGTGTATAAAGATGTGAAAATATGGTTCATGTTCCTTGATATAATGAAGGGAAAGCGCGACTTTCCTGTATTATCTGTGGTTTTATTTCCAGCAAATAGGGGAATTTCGCT # Right flank : TTTGCTTCCGGCGAACGGAATGTGGCTTTCTGCTCGGCGCACTTTTTATAACTGCGCCAATTAACATCGACATGAATCCGTTCGCTTGCGATAACGACTAGTCATGCAAAAAGCAAGTCCGAAAAACCAAATAAGCAATATAGGCGCACCGACGCCCATATTGCTTATTTTCGTTTTTATTGTCTATTTCAACGCTGGCCAAAATGCTTTATTCGCTTCGATTAAGTCATCTAGTATATCTTTTGCTACTTTTGCACTTGGCACGGTTTTCGATAATGTGATGGCTTGCCATAGTTTTTGGTAGGAACCTTCTTCAAACGCTTCTACTACTAATTTTTCGACGCCAACTTGTTGCTCCATGAGACTCTTTTGGAATCTAGGGATTTCTCCGACAACTAGTTTTTCTGGGCCGTTGCTGCCGACGATGCACGGGATTTCTACCATTGCTGTTGGGTCAAAGTTCGGGATGGCGCCATTGTTTTCGACAATCATTAACATCC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 113647-114541 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPDF01000005.1 Alkalihalobacillus clausii strain 7894-1 contig00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 113647 32 100.0 33 ................................ TGTAATTTAAGACGTTGGTCAATTTTAATTATG 113712 32 100.0 35 ................................ TTGCATTCCTTTGACTAAGCCTTTGATTGCTTCTT 113779 32 100.0 33 ................................ TTGTGTGTTCATAGGGTTTTCACCACCGTTTGT 113844 32 100.0 33 ................................ GCGGATGTTTTGTCGCTGATGTAAATGCCGAGG 113909 32 100.0 35 ................................ AGTCTGTCACCTCAAATGTAAATCTAAAATCAAGC 113976 32 100.0 36 ................................ AAAAACTTATCAGAACCAGGAATGAAAGCGGATGGC 114044 32 100.0 36 ................................ CTTCATAGTTCACATTAAAATATAGGTAAACGTTAG 114112 32 100.0 35 ................................ TACTAGTGGTTATCGCGGAGTTTCAAAACTAGGGA 114179 32 100.0 36 ................................ AATCAAGCAATGCAAGCTAGTGCAAAAGGAGCAAAA 114247 32 100.0 33 ................................ ATAATAAACGTAAGGATGATTTAGAAAGATAAG 114312 32 100.0 34 ................................ CACTATCACGGTGCCAAAATACAAATACATTGGT 114378 32 100.0 33 ................................ ACAGCTCCTTTTTGGTTCAAATAACCTTCAAAT 114443 32 93.8 34 ..A........................A.... TTGCATTTCCCGTAAACGGGCAAAAAAAGGCGGC G [114455] 114510 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 99.6 34 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TTTACGCATGCAGGTCAAGCACTGCTACTGAGAATGTATACACCAGGGGTCATTACCGGCATTATCGTGACCCTTCCATATTCACTATATTTGTTTTACCGGTTAGAAGCGGAATATAATATTCAGGTTAATGATCTAATTGCCAGTATCCCATACGGACTGACCATTATTCCAATCGTGGCTTTCGGTCATCTACTAGCTAAAAAAGTGATTCGGTAAAAAATGTTGAGGTATTTCATGGTTCGTTTTTGGATTTAACATTGATAACAAGTGAGCAAACAAATATAACTTTGAGAAAGGTTTTCTAAACCTATTATTTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAACCTAAATATGAAATAATATGTGTAATATTGTTTAAATGTCGTTTGTGTCCTATGATATGATAGAAGAAAAGGGTGATTTTTCCCTATTATTTATAGTTTCACTCCAAGAAATAGGGAGATTTCGCT # Right flank : TCCATAGTCTTTGGATAGGGCATCGATAGGGTTAGCCGGAGAACTCTATGTTTATGCCATTTCCATTAGGCCACACGGCAGTTTTCTTTTGTGGGTTGTGAAAATAGTGTCCACGTAAAACGAGAGCCAGGAGGAAAACTCCTGGCTCTGTCTGCTCTTTTTAAGAAAGTACAAACTCCCTTGGATTTGCTAAATCATGATTAAATGCATGACTAAACAGCTGAACCAATCCGTTCGATGTGGATTTTTTGCTGATACTGTTCGGCTTGTGAAAAATCAATCGTTGGCAGCCAGTGGAGGCAGTTTGCCAATGAGAGGGCGCTGCCTGCTAATAGAGCTGCTTTTACATCGTTCGTTTTTCGCCACTCGCGTATAAAGGTGCCGAGAAAAATATCGCCTGAGGCGGTAGCATTTGTTACGTTAATCGTTGGGAGCGTGACACGCCAGATGTCTCCGTTGATTTTGGCGACTGTTCCTTCGCCGCCTAATGTGACGATGCA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 170758-171190 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPDF01000005.1 Alkalihalobacillus clausii strain 7894-1 contig00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 170758 32 100.0 35 ................................ GGACATCTGTATTCGCTCGAAATGAGCAAAAAAAG 170825 32 100.0 33 ................................ CTCATACGAGTTGGAGGTGGTCTGATGCAAGTA 170890 32 100.0 34 ................................ CGCGTGGGGGCTGTTGATGGCGACTACGGACCAA 170956 32 100.0 35 ................................ GCTAAGGCTTCTGTTGCGGTGTCCCCTCCGCTTTT 171023 32 100.0 35 ................................ ATACATCATAGCCCTCCTTATGTCCCGCCCAATAG 171090 32 100.0 36 ................................ GACAATTACAAGGTTATGGACTTTGATCCGCTCGAA 171158 32 87.5 0 .............T.....T..........TC | A [171184] ========== ====== ====== ====== ================================ ==================================== ================== 7 32 98.2 35 GTCGCACTCTTTGCGAGTGCGTGGATTGAAAT # Left flank : TTCCGCGGTGAATAAGATAATGAATGGTGTCGGCATCGTTCTTATTTCAGGCTTGCTTAACTATCCATTGACGTACCTGCTAGGGACTGAAAAATCGGATGGCATCCTTGTCTTTAGCATCATGGCTGCAGTCGGGTTGTTTTTACTAAGTTCTTGGCTATTTGAAATTTTTCTAGGCGCTGTTTCCTTTGATGCACTACAAGGGATGAATCTAGATAAGCTGTTCTCTGGAAGTTTTTTAGCGGTCACGTTTGTGCTATTCATGGCCTCCTACGTAATTGCACTGCAAGTGTATAAAAGGAAAGAATTCTAAGCGAGTAGGTGCGAACCCCAAGCGCACATGAAATCCCAGGGAGGTTCGCACCAAAATCCACTTTTAATATGTAATAATGTGTGTAAAAATGGATTAATGTGAGCGGAGCCGCATGTTAAAATAGGAGAGAAAAACGAAATTCGCGCTTTTTTGGATGTTTCATTCCATAAATTCGTTGAAAGTCGCT # Right flank : CGCGCTCTTCTCAGCTGCCAAACGTTGGTAGTCGCACTCTTCATGCGTGCACACATGAATAGAAGAACACCGGTTAGACTGAATCATCACCATCTATACAGCAGCCAAAACCCTTATTTTACAGCGTTTTTGGCTGTTTTTTTGGTTTGTTCAGCCAGCTGCTTGACAAGGTATAGCTCTGTTCTGTAAAGTAGTTATTACACTAACTACTTAGAGGTGCTGATATGGAAGAGGCAGTCATTCAGGAGCTGCAAAAGCACGGTTTTTCCAAATATGAGTCAAAAGCGTATATTGGGTTATTAAAGGCGCCAGCGATTACAGGTTATGAATTAAGCAAGCGCTCAGGCGTGCCTCGGTCGATGATTTATGAAGTGCTTGGCAAGTTGCTCGATAAAGGGGCTGTGCATACCGTGCCCGCTGACCCAATTGTCTATAAGCCAGTGGATCCGCGGCAGCTATTGACGAAAATGAGGGAAGATCTTGATGCTTCTTTGACCTCA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGCGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.90,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //