Array 1 173563-174201 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOCP01000009.1 Escherichia coli strain MOD1-EC5792 MOD1-EC5792_9_length_174935_cov_240.237, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 173563 29 100.0 32 ............................. ATCTGGCTCTTCAAAAAACAGCAGCCTGAACC 173624 29 100.0 32 ............................. CCGCCATCACAGAACCTTGCCAGACCGTATCC 173685 29 100.0 32 ............................. CGCCCAGGATCAGCTTACTGCGCACCGTTTCC 173746 29 100.0 32 ............................. GCGGGTTTTTTACGCGTGGGGTTGCAACAGGT 173807 29 100.0 32 ............................. AAAAAACAGCAAAAGATGAACAAAATATAAAC 173868 29 100.0 32 ............................. TTCATGCGCCGCCCCACTTCACTGATAGCGAA 173929 29 100.0 32 ............................. CTCAAAATCGGCGGCGGTTAAGTGGCTGACAT 173990 29 100.0 32 ............................. GATCTAAAAAGGATCTGCGGAACTGAAAAAAT 174051 29 100.0 32 ............................. GGTTAAACATGCCGTTAACGCCATTTCAGCGC 174112 29 96.6 32 ..........................A.. TTTAGCGTAAAGTCAACAATTACTTGGCTTTT 174173 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 95677-94428 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOCP01000017.1 Escherichia coli strain MOD1-EC5792 MOD1-EC5792_17_length_110600_cov_227.947, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 95676 29 100.0 32 ............................. CACAAGAAAAAGATATCGCAGCGTCATTTATG 95615 29 100.0 32 ............................. GTCGCTTTTGGCGGCGTGGGCTAATGCTGGTT 95554 29 100.0 33 ............................. TTTTCGGGACGCACTGCAACCTACCAGGACCGC 95492 29 96.6 32 ............................T GTTTCGCCGCAAATACTACCGCAACGGCGCGC 95431 29 100.0 32 ............................. CGAACAGAAAAACCGTTCTCAGCCAGCGTCAG 95370 29 96.6 32 ....................A........ CAAACGATGAGCGGGCCAACGAATCGCCGTTG 95309 29 100.0 32 ............................. ATCCACGGTTCGACGCCGATCGCCGTGGCTAT 95248 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 95187 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 95126 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 95065 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 95004 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 94943 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 94882 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 94821 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 94760 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 94700 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 94639 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 94578 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 94517 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 94456 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //