Array 1 1724-4873 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUBM01000003.1 Apilactobacillus micheneri strain HV_66 scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 1724 29 100.0 32 ............................. AGATCTACTAGGAACTCACGAAATTAATGCCA 1785 29 100.0 32 ............................. GATTAAATCATCATAGTTTACTTTGTCCTTAT 1846 29 100.0 32 ............................. TGATCAAAGGTGTATCCGTTCATAATCAGCCA 1907 29 100.0 32 ............................. AGCCCATTTTGCTAACGTTATTTCTCCCAGCA 1968 29 100.0 32 ............................. TCAATAGTTTAGACGATCAAGTCTTTAAGTTA 2029 29 96.6 32 G............................ TTATGCTAGAACAACTAAAATTAGTGATGTCA 2090 29 100.0 32 ............................. TAAACAATAATTTTTCCTGTTAAATTACAAAT 2151 29 100.0 32 ............................. GTTTTCTAACATTATCTAATGATTCTTTACTC 2212 29 100.0 32 ............................. AAAAAACCGTTAGAAGGCATAAGAAAGATGCC 2273 29 100.0 32 ............................. GGCAATAATAGTTCACTAAAAAAGTAGTTTTT 2334 29 100.0 32 ............................. ATTCATCTTTATCTACATCTGCTGATAAGATA 2395 29 100.0 32 ............................. GAATTATGATCCTAATTACTTTTCTATGCTTT 2456 29 100.0 32 ............................. AGGAGGTATGTTTTCTAATTTGAGTAATTTAT 2517 29 100.0 32 ............................. TTGGACTATTCCATCTGGTGGACCAACGATTG 2578 29 100.0 32 ............................. AGTTTTAAATAAGGTTAAAACTATGGCTGTTG 2639 29 100.0 32 ............................. TATATTCAAAAATAAGGAGGAATAAGATGTCT 2700 29 100.0 32 ............................. TGTCCAGAACCGCCTAACTTGGATAGAATCCA 2761 29 100.0 32 ............................. ATAATCGCTTAGCTTCCTTTTTCTTATCCATG 2822 29 100.0 32 ............................. TTCTTAGCCCACTCGAAGAACACATCAGATGA 2883 29 100.0 32 ............................. AGAATCTAATGATAAACCAGTCATATATGATA 2944 29 100.0 32 ............................. GAACTCGAACATTGGCTGTCGCTTGAATATTA 3005 29 100.0 32 ............................. ACCAGATCATTAGCATTGTTTTTATCAGCACC 3066 29 100.0 41 ............................. CGCTAAGACTACCTAGACTTTCTTTAAAGCCTAGTTGAGCC 3136 29 100.0 32 ............................. CTGCCAATCGTATCAACATGGTCTACGTCTGA 3197 29 100.0 32 ............................. ATGCAGTTAATATAACTACTATTAAATTACTT 3258 29 100.0 32 ............................. TGCTCCTGGATTAAAGCAAGGTGATTACATTG 3319 29 100.0 32 ............................. TTCCAGTTGCTATTTAGTAATTGGAAACAAAA 3380 29 100.0 32 ............................. GAATTTACTAATTAAAGCATTAAAACAAGAGT 3441 29 100.0 32 ............................. TTAGATTTAGATTTTTTAATTTTAGCCTGTAA 3502 29 100.0 32 ............................. AGACTTATCTATGTTTTTACCTAATCTAGTTA 3563 29 100.0 32 ............................. TAACATACCTTAAAAAAGAATCTTTGTAAACG 3624 29 96.6 32 C............................ TCAAAAAATATCTAATATGGGTACAAATTATA 3685 29 100.0 32 ............................. TCATATTTTTAATAGAATGCTCCTTTTATTTA 3746 29 100.0 32 ............................. TATATAACCTTAATTGTCTTTGTCCCCACTCC 3807 29 100.0 32 ............................. GATTTTTGGTTTTGAACTTATGGGCTTTTGCT 3868 29 96.6 32 G............................ CTATCAAGATAAATAAGATATTGCTGTATATC 3929 29 100.0 32 ............................. AAAAGCAATTCAATAGTAATGATGATATAGAT 3990 29 100.0 32 ............................. CTGATGAATTTAAGGAGTACCGTGATGCTTCA 4051 29 100.0 32 ............................. TTATTTTTTAATGAACGTTGCCAATCCATATC 4112 29 100.0 32 ............................. AATTGAGTAAAATTGGATAATACATCTGGTTT 4173 29 100.0 33 ............................. TGAAGAATTTGACTATTTCTTAGATGAAATTGA 4235 29 100.0 32 ............................. TATAATATCATAATTTATTAATTATATGGATA 4296 29 100.0 32 ............................. CTGAATGACACCTGACGCTAACCACCAGTAAT 4357 29 100.0 32 ............................. TATCAAAGCTTAGATTTTGACGTTGCTGGAGT 4418 29 100.0 32 ............................. CATACTTATCTTCAGCGATTGCTGGTAGTTTT 4479 29 100.0 32 ............................. CGACCAACTGAAATAGCTTTATCAGCAGCTTT 4540 29 100.0 32 ............................. TTATTTACGTGAGTAGGGTGATTTATTTTTTT 4601 29 100.0 32 ............................. TCATACTTTGAAAGCAAAAAAGCTCACCAGAA 4662 29 100.0 32 ............................. TGCAATTATGCTTAGGGCAAATATCTTGAGTA 4723 29 100.0 32 ............................. TAAGTACACCGTCTTTATTCTCAATCAGTTTT 4784 29 100.0 32 ............................. TTACATCTACAATGTTCCTCAAAACGTTGATA 4845 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================= ================== 52 29 99.8 32 AGAATCACTCCCGCGCATGCGGGATATAC # Left flank : CCCAATCCACATCATCGCCACCTAATAAATTAAACATCGCAATACAACATAGAATGAAGAAGATTAATTTCCACATTCTAAAAATCAAACCAATCCCATTACCGAAAAATGATAGTAGTTTTAAGAAATCCATATGTATCCTCCAAGATTAGTTTATAAAAATTAAGTAAGAAATGTTATTAGTGCATAGCCAAAAAAGAATAATAAAATTATAGAAATAATTATTCGCATTAGTTTCCTCCTTGCTTATATATTGAAAATCAATTATCTAGCCATTGAAATTCCTGATAAAACCAGCATAAATAAAAGTAACCCTGTTAGTATACATATTGCAATAGAAATTTTTCTAAACCTTGTTTTGAAGAAAGATATGATCAAAAACAAAATAAATATGGGAAAAATGATTAGGGTCATGTTAACGCTCCTTAGTATTAAGATAAATTTTTTTCCTGCGCATGCGTGATATACTCAACGCTCTTTTTTTATGTTCTGTTTTATTT # Right flank : CACTTGGAAAATGCCTATAGATCAAGACTTCTTTTTTATTTTCCTGGAAAATCCATTCACTTTTATTGATAATAATTTAATTAATTTACAATCAAGAAGAGCCCGATGAGGTACTTCATCAAAAATTTCATAATCATGTAGAACTGTTTCTAGCTTATAATTATTTAAAAACATTTTTTCTTTTTTGACTAACGGAATAATATCTACAATATTATTATTTAAAGGTTCCAAACCAAATTTCTTTAAATTATAATTCAAGAAGTCGATATCAAAATTAATATTATATCCAGTTAAAACTTTATTGCTAATAAATGCTTTGAAATCTTTAAGGATTAAAAACAATTCTTCGCCATGTTCGTTTAATATTTTGTCATTTAAACCTGTTAAATTTTTAATTTTAGATGGTAATAAAGAATCATTTTTGATTAAATGATCAAAATATTCTTCACCATTTTTAGAAACTTTTAAGGCTCCAATTTCAATTATATTATTATCCTTAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAATCACTCCCGCGCATGCGGGATATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.90,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 18953-15017 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUBM01000003.1 Apilactobacillus micheneri strain HV_66 scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18952 29 100.0 32 ............................. TACCCAACTCTTCTAAGCCTGTATCTTGTAAG 18891 29 100.0 33 ............................. GACCAGCTTTGATAATTTCAGGTGGAACTTTAG 18829 29 100.0 32 ............................. CCTATTCGTTCTTCATTGTCTTTCAATTCTAG 18768 29 100.0 32 ............................. TAAGTCAAGCTAATGCTAATTTTGGAATATAT 18707 29 100.0 32 ............................. TAATGAGAAATATGTATCTTCATTATCTGCGA 18646 29 100.0 32 ............................. TCATCTGAAATACGATTAATACCAGTGAAGGT 18585 29 100.0 32 ............................. TGGAATATCAAACTCTTTCTCTTGGTAGTCTG 18524 29 100.0 32 ............................. TGCCCTATTTAACGCTTTAATTGAAGATGAAA 18463 29 100.0 32 ............................. GGCTTCTGAACAATATACTGATGAAGATTTAA 18402 29 100.0 32 ............................. GAAAGGATTAAATTTTGAATAAAAAACTTATT 18341 29 100.0 32 ............................. TTGTCCCATTAGTTGAGATACTTGAGAAGTTA 18280 29 100.0 32 ............................. TGATTATATTACAGACTTTATTTCTTATTTAT 18219 29 100.0 32 ............................. TTATTTATTAAGTTGTATCTGGGGTGAACTTC 18158 29 100.0 32 ............................. GAAGGATTAAAGCACTCAAATTTCAAATAAAA 18097 29 100.0 32 ............................. GATGAAATGACTGTTTCTGGTTATGTAAATAA 18036 29 100.0 32 ............................. CATTAGCAACGTTTAGAACAGCATTTTCATCT 17975 29 100.0 32 ............................. TAACTATGTTATGTTATTTTGTAAGTTAAGAA 17914 29 100.0 32 ............................. AAACACACAAAATGCTAACTTTAAATATTTAG 17853 29 100.0 32 ............................. AATCATGGTACAAGAACCATTAAATTTCTTAT 17792 29 100.0 32 ............................. ATCAGCTTCAGTATCTAAATATCCATCCTTAT 17731 29 100.0 32 ............................. CACACATAATACCAGTTATTCTGTTAATCTAA 17670 29 100.0 32 ............................. AATTTTAAAGAAACCAAAGTTGTTTAGTGTTG 17609 29 100.0 32 ............................. AGACAATGACGGAAATAATGTTGTTGACTATT 17548 29 100.0 32 ............................. GGGCATGATTTCATTTGTATTCTCATTAATTA 17487 29 100.0 32 ............................. GATCCTAACGCTTGGGATTATGAAATGAATAA 17426 29 100.0 32 ............................. AGCATATCCTCTTAAAATAGTCATTTTTTTAA 17365 29 100.0 32 ............................. ACCCAATGGGACATATTAGGTTGAATATCAAA 17304 29 100.0 32 ............................. CAGAGGATTTTTTCGGTTCTATTCCTGATGAT 17243 29 100.0 32 ............................. CAATCACATGTGGCATTCAGCGGCAAGACGAG 17182 29 100.0 32 ............................. TGCTTTTGCGTAGCCAATGATTGATTAGTAGC 17121 29 100.0 32 ............................. ATCAACAATATTAATTAGAAAGAAGGCAACAA 17060 29 100.0 32 ............................. ACCACAACGTATTCTATGGCTGGTATTCAAAA 16999 29 100.0 32 ............................. AATAGCAGGTGTTCCTTCACTATTTTGTGTAA 16938 29 100.0 32 ............................. ACACCTAGGGCTGCAGAAGTTTGTCCAATGCT 16877 29 100.0 32 ............................. TGTAAATATTGTTAATGATGACAAAGCTTTGC 16816 29 100.0 32 ............................. TTTCATTCGCTTTGATTATTGAATGAGTTAAA 16755 29 100.0 33 ............................. GGCTCGCCAGCTACAATTAAATTTCCATCATAG 16693 29 100.0 32 ............................. ACAATGGCTTGGAAAATAAGTATTTTAAAAAA 16632 29 100.0 32 ............................. AATATTATCCAATGTTGATAAGTTGTTATTAT 16571 29 100.0 32 ............................. TAGTAGAAAATATGTTTGGAAGATTTCATAAT 16510 29 100.0 32 ............................. ATACCAAGTATAACTGGTATTGGAGTAGATGC 16449 29 100.0 33 ............................. ACAGCGACTGTTTGTTCACTACCATTTTCATCA 16387 29 100.0 32 ............................. ATCCATGATGCTATTGGTGAAGCGACCACCAG 16326 29 100.0 32 ............................. TATGTAGTCAATTTCATATTTTTTTGAATAAT 16265 29 96.6 32 ............................C TAAAGCCATGTATGGAGCATTTGTGTCTGTTC 16204 29 100.0 32 ............................. GCCAGTGGCCAAATACTTACTGATTTAGCTAA 16143 29 100.0 32 ............................. CGATATGAATTAGTGGCATTTTGAGCATTCTG 16082 29 96.6 32 ............................C AGGCGAAGTAATCGCATTAAGTGGTGCGAATG 16021 29 100.0 32 ............................. TCATTGCTCATAGGATTTAAGCCAGCATCTTC 15960 29 100.0 32 ............................. ATTAAAAACTATAGTAGAAACTAACAAGAATG 15899 29 100.0 32 ............................. CCAGTGCCATATCCAAAGTTTTCTGAAATGTA 15838 29 100.0 32 ............................. CCAGTGCCATATCCAAAGTTTTCTGAAATGTA 15777 29 100.0 32 ............................. AAAAATGTACGCATATATTGACAATAACAATT 15716 29 100.0 32 ............................. ATGTTTACCAGTTTCTTGAACTAGCATTATCA 15655 29 100.0 32 ............................. ACAGCCAGTGGTGTTGGTCTGGACAGATTGGC 15594 29 100.0 32 ............................. TACAAGCTAACATCCCTGCTAAGAGTATTAAG 15533 29 100.0 32 ............................. TCATAATTAAATGTTGGTCGTATAGACATGTA 15472 29 100.0 32 ............................. CCAACTTTAATTTCTGAAAGAGTGTCATATTC 15411 29 100.0 32 ............................. TGGTACGATAATTTTTATCGAATTATGAATTT 15350 29 100.0 32 ............................. CAGAACTCATTTGCCTGTCAATTCGTTGTGAT 15289 29 100.0 32 ............................. TACAGATGATAGTTTAAAAAACTCCTCATTTG 15228 29 96.6 32 ............................C GATGATCCTGATATTGCTCATTGGGTGAAAGT 15167 29 100.0 32 ............................. TATCATCCCCAGCGTTAGGCACATCAAAGTCA 15106 29 100.0 32 ............................. TATTTGCAATATAATTTTATCGGTCATTAATG 15045 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 65 29 99.8 32 GTATATCCCGCAGACGCGGGAGTGATTCT # Left flank : GCACAAGTAATAAACTTGTCCCCTCATATATGTAAGATATATTGAAACGAATCCCTAGCTCTTATATAATAACTAAGGAGCGTTAAAAGGTTAACAAGTAGTCTGCTTACTTTGTTAGCTGGTCGATAATTATTACCAGTAATTGTCGATCAACGCTCTTTTTCTATGTTTTATTTTTGTATGTTTATAAGTATAGCGGTTTTGGGGTGGGGTGTAAATAAGAAGATTTTATATTGATATAACATTATTAATCATATAAAATAATATTTGTAGCATAATATGCTTCTTTTATTTAATTTTCAATAAACTCATCACAAGATAATCTATATTGATTGTCTTTTCTTTATTACATTAAGTGGTCATGAATTAAATTTCATGGCCACTTTTTTATTTTAAATAATTATGTATGAATAAATAATTATTAATGTTAATATAATAAAAGTAAATGTAATTTGCATTTATTAAAAATGTAATTGTTGTTATATCAGCTTTTTCTAAGT # Right flank : TTTGACGGTTACGGAAATCAAAGCGAAATAGAGTATATCATATATAAATGAAAGGAGCTTTAATTTATGAGTTTACATTTAGAGTGGTTAATACCTATGATATTTGTTTTATTCTTTGATTATATTGTATTTTTTAAAATCATGAAGTGGAAATAATATTTGAATTTAATTGATTTGCATTAAAATTACAAGCGTAGTTTTAATTCTTTATTCATATTATTTGTATTTAAAATTTATTTATTGATTGGAGAAGTATATGGTAGACAAAATTTTATGGGCTAAAAAATCTTTAGGTAATGATGGGAATCCTAAATGGTTGCCCTTATATCAACATTTATTAGACACAAAATTTGTGATTCATATGTTATATAGATTTTATTTGAGTGATCATCAAAGAAATATTATAAAAGAGTCTTTGGAGTCTTCTTTCAGCAATTCAAATGAAGAAAATTTGATTCAATTTATTGGTATTACACACGATATTGGTAAAGCTACACCTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATATCCCGCAGACGCGGGAGTGATTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.90,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //