Array 1 966655-967658 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017973.1 Salmonella enterica subsp. enterica serovar Montevideo str. USDA-ARS-USMARC-1912 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 966655 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 966716 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 966777 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 966838 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 966899 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 966960 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 967021 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 967082 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 967143 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 967204 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 967265 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 967326 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 967387 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 967448 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 967509 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 967570 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 967631 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 984421-986585 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017973.1 Salmonella enterica subsp. enterica serovar Montevideo str. USDA-ARS-USMARC-1912 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 984421 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 984482 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 984543 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 984604 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 984665 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 984726 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 984787 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 984848 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 984909 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 984970 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 985031 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 985092 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 985153 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 985214 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 985275 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 985336 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 985397 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 985458 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 985519 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 985580 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 985641 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 985702 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 985763 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 985824 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 985885 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 985946 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 986007 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 986068 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 986129 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 986190 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 986251 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 986312 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 986373 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 986434 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 986495 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 986556 29 96.6 0 ............T................ | A [986583] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //