Array 1 362279-363710 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXZZ010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 931 A NODE_2_length_542643_cov_69.7212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 362279 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 362340 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 362401 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 362462 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 362523 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 362584 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 362645 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 362706 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 362767 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362828 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 362889 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 362950 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 363011 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 363072 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 363133 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 363195 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 363256 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 363317 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 363378 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 363439 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 363500 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 363561 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 363622 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 363683 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 379842-381989 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXZZ010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 931 A NODE_2_length_542643_cov_69.7212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 379842 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 379903 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 379964 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 380025 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 380086 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 380147 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 380208 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 380270 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 380331 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 380392 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 380453 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 380514 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 380575 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 380636 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 380697 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 380758 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 380819 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 380880 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 380941 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 381002 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 381063 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 381124 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 381185 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 381246 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 381308 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 381411 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 381472 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 381533 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 381594 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 381655 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 381716 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 381777 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 381838 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 381899 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 381960 29 96.6 0 A............................ | A [381986] ========== ====== ====== ====== ============================= ========================================================================== ================== 35 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //