Array 1 57862-58171 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSUL01000023.1 Bacteroides oleiciplenus strain OM05-15BH OM05-15BH.Scaf23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================================================== ================== 57862 45 87.2 30 ...-.TT....-....G.....................G........ AACTACGTCAACCGTGTTATGTCCGGGGTG T [57878] 57938 47 95.7 63 ...........G....................T.............. GACAGTCGTATGAAGCACGCCGCCGTTTCCGTTGTGATTTGCAATTTCATCTTCTGTGAAAAA 58048 47 100.0 30 ............................................... CGGGCAGGGGGCAATATAGAAGCAGCTACC 58125 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================================================== ================== 4 47 95.7 41 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTAGAAACAAC # Left flank : CCGAGTCCCGATCCTTTTTATGCCATTATCGAAGATGGAGCCTGGTTGAATGACGAGCCCTATTACGTCATTCATCGCATCGCCTCCGATGGAAGTTATAAGGGTATCGGTGATATTTGTTTAAGTTGGTGCGCCAAGCAATATCCCAGTTTACGCGCGGATACACATAAGGACAATATTATCATGCAAAACCTCCTCACGCGGAACGGGTTTGTCCGCTGTGGAACGGTTTATGTTTCAAATGGGACGCCCAGAATTGCATACCAAAAAACAATCAGATAACTTTTTCAAAAAAGCCTGGTAAAAGACGAAGAAAAAGACGAAATATGATTTTTCATCTGAATTTTCGCCCCTAAAATTAATTATTTCAAGTAATGATAACAAAATATAATATAGAACTATCTTAACCAGCTTAGAATCCAATATGCCCTATGTCCTCATGCAAAGAATCTACCTATGTAAAACAGTTCTGCCAATTCTCATTTATAGTCGCTCATTCA # Right flank : TAAATT # Questionable array : NO Score: 4.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.74, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTAGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.30,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 216340-214985 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSUL01000011.1 Bacteroides oleiciplenus strain OM05-15BH OM05-15BH.Scaf11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 216339 47 100.0 30 ............................................... AGTATAAACCAATTGGCTGGCGTGGTTATT 216262 47 100.0 30 ............................................... GACGTGGACAATGCTCAACTGAAACTGACT 216185 47 100.0 30 ............................................... GAAAGACACTCTCATTACTCTGTTGAAACT 216108 47 100.0 30 ............................................... AAACATACTCACACATACAACTGTCTGTAA 216031 47 100.0 30 ............................................... GTCGCCAAGAGCAGAAGCCATAGCGGAGGA 215954 47 100.0 30 ............................................... TGTAGTTATGAAATCAATGTTGAAAAATGT 215877 47 100.0 29 ............................................... TTGAAATCCTTAATGCTCCATCCAATGAA 215801 47 100.0 30 ............................................... CGATGCAAGCGTATGGGGTACTGTATCGCA 215724 47 100.0 30 ............................................... ATAGACAGAGAACTGTATAGAGCCTACGTA 215647 47 100.0 30 ............................................... TCGGTGGTGTTATCCTTCGGTCGCCACATG 215570 47 100.0 30 ............................................... TTGTTTATCCAAAAGTAATATGTACATTTG 215493 47 100.0 30 ............................................... AGGATATTAAAGCTCTTGACATAAGGCTTA 215416 47 100.0 30 ............................................... GATAGCGGTAAGGGTTGTTACTGTCTTTCC 215339 47 100.0 30 ............................................... CCCTCAAACCTTATGTCCACTATGGCGGTC 215262 47 100.0 30 ............................................... AATTATTAATTTATAATCAACAAAAAGATA 215185 47 100.0 30 ............................................... GCCTCAGGAAATTAACATTAAGGGAAGTTT 215108 47 100.0 30 ............................................... TGAATTTGCTCGATTACTGCGTGTCATACA 215031 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 18 47 100.0 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAGCCATTAGAAGCAAC # Left flank : AGCGC # Right flank : TGATTATCAGTTATTAGTTCATATTCAAATAGTTACACCACTATTTAGAATTTAAAAAAGAACTTAGTTTCCAAGAGAAAATCTCGCCAAATAGCGGGATTTTCTTTTCAGAATAACTCCAACTGTTGTCCTGGCGTATTCACATCCATTGTTTTTTTTCCATAGAAAAGTTCAATATTTCCAAATTGTTTGTCTGTAATACACATGATTCCTACATTTCCATGTTCAGGTAGAAACGATTTAACTCTTTTTATATGTACCTCTGCATTCTCACTGCTCGCACAATGACGAACATATATAGAAAATTGAAACATCGTAAATCCATCTTTTTGCAGATTCTTTTTAAAATCTACATATGCCTTCTTATCCTTCTTCGTTTCAGTAGGCAAATCAAATAGTACAAGTACCCACATAATGCGATATTCACTAAATCGGTCCATTTACATCTCTGGATAGAATATTCTACGTAACTCACCACTAAAACACTTATATAGAGAAGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAGCCATTAGAAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 1-586 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSUL01000053.1 Bacteroides oleiciplenus strain OM05-15BH OM05-15BH.Scaf53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================ ============================= ================== 1 48 97.9 29 ...............................................T TATGAAAGTGGAGAGTATTCTACCAGTCC 78 48 100.0 29 ................................................ GAATGAGCTAAGCTATACTAGTGCTGAAA 155 48 100.0 29 ................................................ GCGCCTGACTGAGGAACAATATGCTTTGC 232 48 100.0 29 ................................................ GGTAGACGCTGACTTTGGGCTGTACAAAT 309 48 100.0 29 ................................................ TAGTGGCAATGGTAAATGGGCCGTTTTCT 386 48 100.0 29 ................................................ TCTAAATGGTGTTGAAAACCATCAGCCGA 463 48 97.9 29 ....T........................................... GTCCGTGCTGTCACCACCCCGGTAATTTA 540 47 93.8 0 ....T.........T................................- | ========== ====== ====== ====== ================================================ ============================= ================== 8 48 98.7 29 GTTGCTTCTAATGGCTCAAAGATACTAAAATGAAAGCAAATCACAACA # Left flank : | # Right flank : | # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:-0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCTTCTAATGGCTCAAAGATACTAAAATGAAAGCAAATCACAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 7-820 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSUL01000052.1 Bacteroides oleiciplenus strain OM05-15BH OM05-15BH.Scaf52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 7 47 100.0 30 ............................................... TCTTCCTGGCAAAGTCTGACAGGCCAATAT 84 47 100.0 30 ............................................... TTTTCATCGGCTATCCTCCAGTTTGGATCA 161 47 100.0 30 ............................................... GCCCGGGACAAAGGAGGCGCCACAATATCC 238 47 100.0 30 ............................................... TCAGCATCAACACCTTGCTGAGAAAACATA 315 47 100.0 30 ............................................... CACGCAGGAGCTAAGATTGTACGTAGCGCA 392 47 100.0 30 ............................................... CCGGGCCTCACAGGTGAACACCCGTGGCAG 469 47 100.0 29 ............................................... TCCAGCTCCGGAGAGAAAATGCCGATTTA 545 47 100.0 29 ............................................... CTCTCCTTTGGATTGTTCGATCTGCTTTA 621 47 100.0 29 ............................................... GTCATTCTCTTTACATTCGTTCCATTCTT 697 47 100.0 30 ............................................... AAAAACATTAAAGAAGACCGCGAATTCCGT 774 47 95.7 0 ................................A.........A.... | ========== ====== ====== ====== =============================================== ============================== ================== 11 47 99.6 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAGCCATTAGAAGCAAC # Left flank : TCATAAG # Right flank : TAAATT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAGCCATTAGAAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [8.3-10.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 166359-165271 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSUL01000009.1 Bacteroides oleiciplenus strain OM05-15BH OM05-15BH.Scaf9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 166358 32 100.0 33 ................................ AAGAGAAAATGCCCCAAGCTGCATCTGCTGCTT 166293 32 100.0 34 ................................ TGCAAGCAAGAAAGAGTTGCTACTCACAAGTCTA 166227 32 100.0 34 ................................ ATCCGATTTTAATTTTATTTGAATACTGTCAGAC 166161 32 100.0 33 ................................ TACGAAAATATGGGATTACATGTGCTGTAAACA 166096 32 100.0 34 ................................ TCGACGTGGATAAAGAAGATATTAGTGGGATAAT 166030 32 100.0 33 ................................ ATCGTAGACTTATGGCTACCGCAGGAAGACAAC 165965 32 100.0 35 ................................ AGAGAAAGCGGATTAGACTCATCGGGGATACTTGT 165898 32 100.0 35 ................................ AAGTAACAAGGAGAATGATTTGGCACCACCACGTT 165831 32 100.0 34 ................................ TCAACCAATGAAGGGAATACATGAGGGATGGTAT 165765 32 100.0 35 ................................ ATCTCAACACTATTGACATCAACATGTGCAATGTA 165698 32 100.0 33 ................................ TGAAGAAGATGAAGAAAGGGGATACTCTTATAC 165633 32 100.0 34 ................................ ACTCTCATCTACTCAGACCTTACAGAATGGAAGA 165567 32 100.0 34 ................................ CTGGCGGAGTGATTCGCAGCTTTATGACGGAGAA 165501 32 100.0 33 ................................ AGGGCTGCTTCGTATGTCTGCCGGAAAGCAATA 165436 32 100.0 32 ................................ CAGTAACCGGTGCGCGCTTTCACATAATTTCA 165372 32 84.4 36 ............A...A.C.C..........T TAGGTTTTATATACCACTTACCCTAGTGTATCAATT CT [165363] 165302 31 75.0 0 A..G...-....A.A......AT......T.. | A [165285] ========== ====== ====== ====== ================================ ==================================== ================== 17 32 97.6 34 GTCACTCCTTATGCGGGAGTGTGGATTGAAAC # Left flank : TGACCTAGATAATTATCCTGTATTTTTAATTTCATAAGAATGTTCATATTAGTAACCTATGATGTAGATACTCAATCAGAAACGGGAGCTAAACGATTGCGTAAAGTGGCTAAGGAGTGTTTGAATTATGGGCATCGTGTCCAAAATTCAGTATTTGAATGTGTATTGTCTGAAGCGCAGTTCCTGATTTTTAAATCGAAAATTATGAAAATAATAGATTATGATTTAGATAGCATTCGCTTTTATTTCTTAGGCAAAAATAGGAGTAATCGAATTGAGTGTTTAGGACGTGAAACATCTATTGATGTAAATTCTGAACTAATAATTTAGTATATTGCGAATGTGAAGCGTTGCATATTTTGTGTGTCTTTCGCAAGTGCTAATAATCAGCCATTAAGGTTCTTTTTTGCTTAAAAATGTGTCCTTTATAAAAATAGATTTTCTATCTTCGCAAAATGCTCTTTAATCATATAAGAGTATCAATGCTTTAAAGTAAAAGA # Right flank : ATTCACTTTAGTTAAGTTTTTACTTGTTATTTCAATATTTAACGAATAAGTGTGGAGCAATAAGACATTAGCAATTTTCTAAGATTATTGCATATTGCTGTTTTATAGTCTTTCGATGATCATTATACTGCAAATAAGTATTGTGGGCGAATCTTGAATTTTGTCGTTTCTCTGCAAGATATATCTTGCTTGTAGAGATGTGCAAAAAATGTTCCCTTCATTATCAGTTACTTATGCCTCTCTCTTGTAGAGAACATTACTAATTTGCCATCTTTGCTGTTCTTCTCCGTTTTCTCTTCATTTCATTCCTTGTAGAGATGGCTGTAATTTAATGTATTGTTTATTAGTGATTTAAAGAATTGTTTGGTAGATGCCATTTTCTTGCTTTTACCTCTATCTCGCCCTAACTTTGCAACATCGAATCTGAGAAAACAGAACGCCTGACTGTTGAGGCCTCACAGTGAAAAACGTCTTGTTTACGGATGAGATAAGAGAAAGAC # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCTTATGCGGGAGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACTCCTTATGTGGGAGTGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //